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Platform GPL10481 Query DataSets for GPL10481
Status Public on Jun 03, 2010
Title Agilent-scanner-UNC-custom-4X44K-without-Virus
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent
Manufacture protocol Agilent printing protocol
 
 
Submission date Jun 02, 2010
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) cperou@med.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Samples (240) GSM533645, GSM533646, GSM533647, GSM533648, GSM533649, GSM533650 
Series (13)
GSE21371 Tumor Suppressor Role for the c-Myb Oncogene in Luminal Breast Cancer
GSE31589 Expression of Epithelial-to-Mesenchymal Transition (EMT)-associated genes in extratumoral microenvironment predicts poor clinical outcome in breast cancer patients
GSE31870 Maintenance of Hormone Responsiveness in Luminal Breast Cancers by Suppression of Notch
Relations
Alternative to GPL20311 ([probe name version])

Data table header descriptions
ID
NAME probe name at UNC microarray database
Agilent_probe_name Agilent probe name
Refseq ID Refseq ID
Genebank Accession Genebank accession number
Gene Symbol Gene Symbol
Gene Description Gene Description
Chromosome Number Chromosome Number
Chromosome Map Location Chromosome Map Location
SEQUENCE
Chromosome Coordinates Chromosome Coordinates
DCC Gene Symbol DCC Gene Symbol from TCGA project
ORF_LIST Entrez Gene Link
SPOT_ID

Data table
ID NAME Agilent_probe_name Refseq ID Genebank Accession Gene Symbol Gene Description Chromosome Number Chromosome Map Location SEQUENCE Chromosome Coordinates DCC Gene Symbol ORF_LIST SPOT_ID
1 GE_BRIGHTCORNER GE_BRIGHTCORNER control
2 DARKCORNER DARKCORNER control
3 DARKCORNER DARKCORNER control
4 DARKCORNER DARKCORNER control
5 DARKCORNER DARKCORNER control
6 DARKCORNER DARKCORNER control
7 DARKCORNER DARKCORNER control
8 DARKCORNER DARKCORNER control
9 DARKCORNER DARKCORNER control
10 DARKCORNER DARKCORNER control
11 DARKCORNER DARKCORNER control
12 AGI_HUM1_OLIGO_A_23_P87556 A_23_P87556 NM_153634.2 CPNE8 copine VIII 12 12q12 GTAGGTGTTGGACCAGCAGAATTTGATGCAATGGTCGAATTGGATGGAGATGATGTAAGA [36.1:12:37355814-37350839:-] CPNE8 CPNE8
13 AGI_HUM1_OLIGO_A_24_P399454 A_24_P399454 NM_138568.2 EXOC3L2 exocyst complex component 3-like 2 19 19q13.32 CAGACATCCCTGTGCCCCGCCCATCTTTCTGTCTCAGCCTCCCTCTCTTCCTGGGCCGCC [36.1:19:50408316-50408255:-] EXOC3L2 EXOC3L2
14 AGI_HUM1_OLIGO_A_23_P350172 A_23_P350172 NM_001098638.1|NM_182969.1 RNF169|XRRA1 ring finger protein 169|X-ray radiation resistance associated 1 11|11 11q13.4|11q13.4 GAAGCCAAGGCAAAGCAAGGTTTGTTCATCTTCCTTTCCTGTCATTTAAGGTAAAACAGG [36.1:11:74230385-74230444:+] RNF169;XRRA1 RNF169; XRRA1
15 AGI_HUM1_OLIGO_A_24_P93887 A_24_P93887 NM_017592.1 MED29 mediator complex subunit 29 19 19q13.2 CTCCTGTCCTGGACCCCACGTCTGCAAGGAAACCCTAGGACCATGGATACCTCTGTGATT [36.1:19:44581315-44581374:+] MED29 MED29
16 AGI_HUM1_OLIGO_A_23_P16908 A_23_P16908 NM_198963.1 DHX57 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 2 2p22.1 GTGTCCTCGAGGATCCCGGATCATCAGCACAATTGTGAAACTTGTCACCACACAATAAAA [36.1:2:38879003-38878942:-] DHX57 DHX57
17 AGI_HUM1_OLIGO_A_23_P258462 A_23_P258462 NM_006017.1 PROM1 prominin 1 4 4p15.32 TCAAATGTGATGGCTAGATTCTAACATATTGCCATGTGTGGAGTGTGCTGAACACACACC [36.1:4:15579772-15579711:-] PROM1 PROM1
18 AGI_HUM1_OLIGO_A_24_P81965 A_24_P81965 NM_021033.5 RAP2A RAP2A, member of RAS oncogene family 13 13q34 TTCTTTTGATGTTGCAACTTTTGGGTTCTTTTAAACTGTGATAGTGATGGTAACTGATGC [36.1:13:96917444-96917503:+] RAP2A RAP2A
19 AGI_OLIGO_AL133645_1_971 AL133645_1_971 TGCCAAGCTCTCCAAGCTGGAGGCCACTCTGCAACGTGTGAGTACCAGGAGCTGATGAAA [36.1:3:161769354-161769413:+] KRT8P12 KRT8P12
20 AGI_HUM1_OLIGO_A_23_P8038 A_23_P8038 NM_014596.4|NM_170783.2 ZNRD1 zinc ribbon domain containing 1 6 6p21.3 TGGGTTTTTAGATGCCTTGTCCATCCTGTCTGGTTGCAATGTTTTGCTCCCAGAAGAGAA [36.1:6_qbl_hap2:1279456-1279515:+]|[36.1:6_cox_hap1:1481136-1481195:+]|[36.1:6:30140508-30140567:+] ZNRD1 ZNRD1

Total number of rows: 45220

Table truncated, full table size 9999 Kbytes.




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