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Status
Public on Jul 24, 2010
Title
IMUL-Candida glabrata 8x15k
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Nakaseomyces glabratus CBS 138 Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site: http://www.agilent.com/
Description
The nucleotide sequences of the 5283 C. glabrata ORFs and the mitochondrial genome (release 2) were downloaded from the Génolevure Consortium (http://www.genolevures.org/ ). Following the Agilent eArray Design guidelines, two separate probe sets for each ORF were designed, each consisting of 60 base oligonucleotides. The probe selection was performed using the GE Probe Design Tool; probes were filtered following their base composition and distribution, cross-hybridization potential and melting temperature to yield two probes sets representing each 5210 nuclear and 6 mitochondrial ORFs. These probes cover more than 98% of the nuclear genome and represent 6 out of the 8 mitochondrial protein-encoding genes. For quality control and normalization purposes, 103 probes were selected randomly and spotted 20 times throughout each array in addition to standard Agilent controls. C. glabrata custom arrays were manufactured in the 8x15k format by Agilent Technologies.
Contributor(s)
Sanglard D , Ferrari S Submission date
Jul 21, 2010
Last update date
Jul 22, 2016
Contact name
Dominique Sanglard
E-mail(s)
Dominique.Sanglard@chuv.ch URL
http://www.chuv.ch/imul Organization name
University of Lausanne and University Hospital Center
Street address
Rue Bugnon 48
City
Lausanne
ZIP/Postal code
1011
Country
Switzerland
Samples (107)
GSM587438 , GSM587439 , GSM587440 , GSM587441 , GSM587442 , GSM587443
GSM587444 ,
GSM587445 ,
GSM587446 ,
GSM587447 ,
GSM587448 ,
GSM587449 ,
GSM587450 ,
GSM587451 ,
GSM587452 ,
GSM587453 ,
GSM587454 ,
GSM587455 ,
GSM587456 ,
GSM587457 ,
GSM587458 ,
GSM587459 ,
GSM587460 ,
GSM587461 ,
GSM587462 ,
GSM587463 ,
GSM587464 ,
GSM587465 ,
GSM587466 ,
GSM587467 ,
GSM587468 ,
GSM587469 ,
GSM587470 ,
GSM587471 ,
GSM587472 ,
GSM587473 ,
GSM587474 ,
GSM587475 ,
GSM587476 ,
GSM988934 ,
GSM988935 ,
GSM988936 ,
GSM988937 ,
GSM988938 ,
GSM988939 ,
GSM988940 ,
GSM988941 ,
GSM2251720 ,
GSM2251721 ,
GSM2251722 ,
GSM2251723 ,
GSM2251724 ,
GSM2251725 ,
GSM2251726 ,
GSM2251727 ,
GSM2251728 ,
GSM2251729 ,
GSM2251730 ,
GSM2251731 ,
GSM2251732 ,
GSM2251733 ,
GSM2251734 ,
GSM2251735 ,
GSM2251736 ,
GSM2251737 ,
GSM2251738 ,
GSM2251739 ,
GSM2251740 ,
GSM2251741 ,
GSM2251742 ,
GSM2251743 ,
GSM2251744 ,
GSM2251745 ,
GSM2251746 ,
GSM2251747 ,
GSM2251748 ,
GSM2251749 ,
GSM2251750 ,
GSM2251751 ,
GSM2251752 ,
GSM2251753 ,
GSM2251754 ,
GSM2251755 ,
GSM2251756 ,
GSM2251757 ,
GSM2251758 ,
GSM2251759 ,
GSM2251760 ,
GSM2251761 ,
GSM2251762 ,
GSM2251763 ,
GSM2251764 ,
GSM2251765 ,
GSM2251766 ,
GSM2251767 ,
GSM2251768 ,
GSM2251769 ,
GSM2251770 ,
GSM2251771 ,
GSM2251772 ,
GSM2251773 ,
GSM2251774 ,
GSM2251775 ,
GSM2251776 ,
GSM2251777 ,
GSM2251778 ,
GSM2251779 Series (6)
GSE23826 Loss of mitochondrial functions in Candida glabrata results in enhanced virulence in mice
GSE23827 Contribution of CgPDR1-regulated genes in enhanced virulence of azole-resistant Candida glabrata (part 1)
GSE23828 Contribution of CgPDR1-regulated genes in enhanced virulence of azole-resistant Candida glabrata (part 2)
GSE23829 Contribution of CgPDR1-regulated genes in enhanced virulence of azole-resistant Candida glabrata
GSE40232 Milbemycins: more than efflux inhibitors for fungal pathogens
GSE84816 Candida glabrata WT and mutants under iron starvation
Relations Alternative to
GPL22200 (Probe name version)
Data table header descriptions ID ORF DESCRIPTION Gene Description
SEQUENCE 60-mer sequence of the probe
Data table ID ORF DESCRIPTION SEQUENCE CAGL0C04213g
CAGL0C04213g CAGL0C04213g tr Q8NJT2 Candida glabrata YBR005Wp, identified start [Candida glabrata] Complete CDS. CAGL0C04213g
AGCCATACCAAATTACGGTCCACTGAATGACAATGAAGTGGAAGTATATCTACATGCACC
CAGL0L02893g
CAGL0L02893g CAGL0L02893g tr Q8TFK7 Candida glabrata YOR205Cp, identified start [Candida glabrata] Complete CDS. CAGL0L02893g
CACTGGAGAGGGTTGCAGAAGATAGTTATGACAAATCTCAAGAAGGAAAATACTATATTA
CAGL0B00374g
CAGL0B00374g CAGL0B00374g similar to CA0039 IPF3998 Candida albicans and KLLA0C00528g Kluyveromyces lactis, start by similarity [Candida glabrata] Complete CDS. CAGL0B00374g
CAGCTTTAGATATGAACTGTTTAGTCAAAGACCAAAAGAGAGACAAGAAAGTACGAGAAC
CAGL0K04037g
CAGL0K04037g CAGL0K04037g tr Q9P8N8 Candida glabrata 1, 3-beta-glucan synthase, identified start [Candida glabrata] Complete CDS. CAGL0K04037g
CCCATTCCATAACATTGTTCAACCTAGAAACAAGAGTAACAATGATACTGGTTTGCAAAT
CAGL0K12144g
CAGL0K12144g CAGL0K12144g similar to sp P3826 Saccharomyces cerevisiae YBR101c, start by similarity [Candida glabrata] Complete CDS. CAGL0K12144g
CAGTGAACTTGAGATGCTGCAAAAAGAATTTGAAAAGATTGACTCTTTAAAGGACAGACT
CAGL0C04092g
CAGL0C04092g CAGL0C04092g sp P50857 Candida glabrata TRP1p, identified start [Candida glabrata] Complete CDS. CAGL0C04092g
AGAATAACGTATTTTATATACTAGCGGGTGGACTAACTGCAGAAAACGTCATGGAGGCGG
CAGL0K04917g
CAGL0K04917g CAGL0K04917g tr Q96WQ7 Candida glabrata Rap1p, identified start [Candida glabrata] Complete CDS. CAGL0K04917g
TTCTGGGGATGACGATATTTTGAGGAGAGGTGATGAAGCGGAGGTCAGCAAATTAGTAAA
CAGL0H07271g
CAGL0H07271g CAGL0H07271g similar to tr 06667 Saccharomyces cerevisiae YDR315c IPK1, hypothetical start [Candida glabrata] Complete CDS. CAGL0H07271g
GACCATTGGGTCAATACCCACATACAGTTAAGCAACTCATCAAATTTAGTTCATCATTAA
CAGL0I06380g
CAGL0I06380g CAGL0I06380g tr Q9C1F3 Candida glabrata Mitochondrial RNase P, identified start [Candida glabrata] Complete CDS. CAGL0I06380g
GCAGACAGAAATGATCAAGAAAACGTCCAAAAGGCAAGAACTTTTAAGATATTCCTAGAA
CAGL0J11836g
CAGL0J11836g CAGL0J11836g tr Q9P421 Candida glabrata Carnitine acetyltransferase, identified start [Candida glabrata] Complete CDS. CAGL0J11836g
GGATGCACATTAATATCGTTACTAAGCCTGAAAAGAGTATGCTCTCTGTTGATAAATTAC
CAGL0M12210g
CAGL0M12210g CAGL0M12210g similar to gi S0007586 Saccharomyces cerevisiae YAL044wa, hypothetical start [Candida glabrata] Complete CDS. CAGL0M12210g
CTAAGACTCCAGAGGAGTATGCAAAGAGTCAGCAAAGTTCCAAGGCTCAAACCTGTAAAG
CAGL0F04191g
CAGL0F04191g CAGL0F04191g highly similar to gi S0007591 Saccharomyces cerevisiae YBL029ca, hypothetical start [Candida glabrata] Complete CDS. CAGL0F04191g
TTCCATTCGAAAGAACAACTAGAGAAGGTTATAGCTGAGCAAGGCAATATAAAAGCGTAG
CAGL0A04499g
CAGL0A04499g CAGL0A04499g highly similar to gi S0007587 Saccharomyces cerevisiae YBL071wa KTI11, start by similarity [Candida glabrata] Complete CDS. CAGL0A04499g
TAGATGTCATATTCGAGAAGGAAGACCTCGATGAGTACTACGAAGAAGCAGGTATAGCTC
CAGL0H10202g
CAGL0H10202g CAGL0H10202g highly similar to sgd S0007521 Saccharomyces cerevisiae YBR058ca TSC3, hypothetical start [Candida glabrata] Complete CDS. CAGL0H10202g
ATATCCACATGCCATACTATCTAATGACATCTTTTGATGCATTCTGCTTACATACCTTCT
CAGL0K07111g
CAGL0K07111g CAGL0K07111g highly similar to sgd S0007595 Saccharomyces cerevisiae YBR233wa DAD3, start by similarity [Candida glabrata] Complete CDS. CAGL0K07111g
GGAGTGTGTATTCACTAATTTTACAGAAGCAGCAAACTCAGAAATTCAATTCTGAGTCAT
CAGL0D05318g
CAGL0D05318g CAGL0D05318g highly similar to sgd S0007649 Saccharomyces cerevisiae YBR255ca [Candida glabrata] Complete CDS. CAGL0D05318g
GCAGAAAGGGGCATATTCTTGGAGGAAGAGAGTGTTGCTCAAAGTACTGTCACCAAGTAA
CAGL0L06930g
CAGL0L06930g CAGL0L06930g highly similar to gi S0007588 Saccharomyces cerevisiae YDL085ca, start by similarity [Candida glabrata] Complete CDS. CAGL0L06930g
AAGGTGATGCCAAGAAGAGAATGGAGTCTGATGCTGAAATCTTGAGACAGAAGCAAGCTG
CAGL0K10098g
CAGL0K10098g CAGL0K10098g highly similar to gi S0007603 Saccharomyces cerevisiae YDR079ca, start by similarity [Candida glabrata] Complete CDS. CAGL0K10098g
CCTGTTAGTACATCCTACAAAAGTTGAATTTATCAAGATGGAACTGAATAGATTGCTGTC
CAGL0B01875g
CAGL0B01875g CAGL0B01875g similar to sgd S0028820 Saccharomyces cerevisiae YDR118wa, hypothetical start [Candida glabrata] Complete CDS. CAGL0B01875g
ATTTCTAACAGTTACTTTAGGCTGGCCATTTGGTATTTACTTCTGGAAAAAGCCAAACTA
CAGL0H07073g
CAGL0H07073g CAGL0H07073g similar to gi S0007604 Saccharomyces cerevisiae YDR320ca DAD4, hypothetical start [Candida glabrata] Complete CDS. CAGL0H07073g
GAACCTTGAAGTTATGGGTCAGATATGTGAGAACTACCACAGGAGCGTGCAATTCAACCT
5215 1228 Kbytes .Supplementary data files not provided
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