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Platform GPL10740 Query DataSets for GPL10740
Status Public on Jul 28, 2010
Title [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [probe set (exon) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www.ncbi.nlm.nih.gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html

#%create_date=Tue Dec 8 17:31:33 2009 PST
#%chip_type=MoGene-1_0-st-v1
#%lib_set_name=MoGene-1_0-st
#%lib_set_version=v1
#%genome-species=Mus musculus
#%genome-version=mm9
#%genome-version-ucsc=mm9
#%genome-version-ncbi=37
#%genome-version-create_date=2007-07
#%netaffx-annotation-date=2009-11-16
#%netaffx-annotation-netaffx-build=30.1
 
Submission date Jul 28, 2010
Last update date Jul 29, 2010
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (405) GSM578134, GSM578135, GSM578136, GSM578137, GSM578138, GSM578139 
Series (52)
GSE23568 Expression data analyzing ID3 (Inhibitor of DNA binding 3)-affected mouse T cells
GSE25551 Expression data from bone marrow derived granulocyte monocyte precursors (GMPs) from wt -, Gfi1 knock-out -, human-Gfi1-SNP36N knock in and human wt-Gfi1 knock in mice
GSE26460 Expression data from primary hepatocytes isolated from miR-143DOX mice

Data table header descriptions
ID probe set ID
GB_LIST GenBank and RefSeq Accessions from mrna_assignment column
SPOT_ID genomic location of the corresponding transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
seqname chromosome number
RANGE_GB NCBI RefSeq for chromosome of current build
RANGE_STRAND strand (+|-)
RANGE_START start (integer). Coordinates are standard 1-based (length=stop-start+1).
RANGE_STOP stop (integer). Coordinates are standard 1-based (length=stop-start+1).
probe_count Total number of probes in the probe set.
transcript_cluster_id Unique identifier for the transcript cluster containing the probe set.
exon_id Unique identifier for the exon cluster containing the probe set.
psr_id Unique identifier for the probe selection region containing the probe set.
gene_assignment Gene name(s) for each assigned mRNA for mRNAs that corresponds to known genes.
mrna_assignment Public mRNAs that should be detected by this probe set based on sequence alignment determined at the time of the current NetAffx annotation update.
probeset_type Array design category of the probe set.

Data table
ID GB_LIST SPOT_ID seqname RANGE_GB RANGE_STRAND RANGE_START RANGE_STOP probe_count transcript_cluster_id exon_id psr_id gene_assignment mrna_assignment probeset_type
10338001 control 622 --- control->affx
10338002 control 454 --- control->bgp->antigenomic
10338003 control 723 --- control->affx
10338004 control 20 --- // AFFX-BioB-3_at, bac_spike // --- // --- // --- // --- control->affx
10338005 control 477 --- control->bgp->antigenomic
10338006 control 468 --- control->bgp->antigenomic
10338007 control 489 --- control->bgp->antigenomic
10338008 control 479 --- control->bgp->antigenomic
10338009 control 136 --- control->bgp->antigenomic
10338010 control 463 --- control->bgp->antigenomic
10338011 control 470 --- control->bgp->antigenomic
10338012 control 484 --- control->bgp->antigenomic
10338013 control 162 --- control->bgp->antigenomic
10338014 control 431 --- control->bgp->antigenomic
10338015 control 355 --- control->bgp->antigenomic
10338016 control 347 --- control->bgp->antigenomic
10338017 control 20 --- // AFFX-CreX-5_at, bac_spike // --- // --- // --- // --- control->affx
10338018 control 430 --- control->bgp->antigenomic
10338019 control 480 --- control->bgp->antigenomic
10338020 control 204 --- control->bgp->antigenomic

Total number of rows: 241576

Table truncated, full table size 97364 Kbytes.




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