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Platform GPL11044 Query DataSets for GPL11044
Status Public on Apr 12, 2011
Title Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mouse4302_Mm_REFSEQ]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
Description This identical to GPL1261 but a custom CDF environment was used to extract data. The .cdf and mapping files, as well as an R package are provided as supplementary files.
Submission date Oct 12, 2010
Last update date Oct 13, 2010
Contact name Michael P Verzi
Organization name Rutgers, the State University of New Jersey
Department Genetics
Lab Verzi
Street address 145 Bevier Road
City Piscataway
State/province NJ
ZIP/Postal code 08854
Country USA
Samples (11) GSM607497, GSM607498, GSM607499, GSM607500, GSM607501, GSM607502 
Series (1)
GSE24633 Cdx2 transcription factor binding in intestinal villus and gene expression profiling in Cdx mutant mice
Alternative to GPL1261 (Alternative CDF [official])

Data table header descriptions
PROBE_SET Affy Probe set ID
GB_ACC GenBank Accession number
DESCRIPTION gene description
SPOT_ID controls

Data table
AFFX-18SRNAMur/X00686_3 --AFFX-18SRNAMur/X00686_3
AFFX-18SRNAMur/X00686_5 --AFFX-18SRNAMur/X00686_5
AFFX-18SRNAMur/X00686_M --AFFX-18SRNAMur/X00686_M
AFFX-b-ActinMur/M12481_3 --AFFX-b-ActinMur/M12481_3
AFFX-b-ActinMur/M12481_5 --AFFX-b-ActinMur/M12481_5
AFFX-b-ActinMur/M12481_M --AFFX-b-ActinMur/M12481_M
AFFX-BioB-3 --AFFX-BioB-3
AFFX-BioB-5 --AFFX-BioB-5
AFFX-BioC-3 --AFFX-BioC-3
AFFX-BioC-5 --AFFX-BioC-5
AFFX-BioDn-3 --AFFX-BioDn-3
AFFX-BioDn-5 --AFFX-BioDn-5
AFFX-CreX-3 --AFFX-CreX-3
AFFX-CreX-5 --AFFX-CreX-5
AFFX-DapX-3 --AFFX-DapX-3
AFFX-DapX-5 --AFFX-DapX-5
AFFX-GapdhMur/M32599_3 --AFFX-GapdhMur/M32599_3
AFFX-GapdhMur/M32599_5 --AFFX-GapdhMur/M32599_5

Total number of rows: 22587

Table truncated, full table size 2397 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL11044_Mouse4302_Mm_REFSEQ.cdf.gz 8.8 Mb (ftp)(http) CDF
GPL11044_Mouse4302_Mm_REFSEQ_mapping.txt.gz 2.8 Mb (ftp)(http) TXT
GPL11044_Mouse4302_Mm_REFSEQ_probe_tab.txt.gz 4.6 Mb (ftp)(http) TXT
GPL11044_mouse4302mmrefseqcdf_12.1.0.tar.gz 2.4 Mb (ftp)(http) TAR

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