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Status
Public on Oct 20, 2011
Title
Spathaspora passalidarum 385K tiled array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Spathaspora passalidarum NRRL Y-27907 Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
NimbleGen design name: 090803_SP_DW_EXP; NimbleGen design ID: 23872. A tiled genome array from Spathaspora passalidarum NRRL Y-27907 with 362,487 probes (average probe length 54.5 +/- 4.0 nt, median spacing distance 29 nt). The design includes random GC and other control probes.
Submission date
Oct 21, 2010
Last update date
Oct 20, 2011
Contact name
Dana Jasmine Wohlbach
E-mail(s)
wohlbacd@dickinson.edu Organization name
Dickinson College
Department
Biology
Street address
P.O. Box 1773
City
Carlisle
State/province
PA
ZIP/Postal code
17013
Country
USA
Samples (6)
GSM611288 , GSM611289 , GSM611290 , GSM611291 , GSM611292 , GSM611293 Series (2)
GSE24853 Expression analysis of Spathaspora passalidarum NRRL Y-27907 grown in glucose or xylose
GSE24858 Expression analysis of various fungi grown in glucose or xylose
Data table header descriptions ID Nprobes Number of probes on the array corresponding to that gene. All probes mapping to a gene are indicated in the included file SpasProbeMapping.txt
SPOT_ID Spathaspora passalidarum NRRL Y-27907 protein ID number, as available on the genome portal (http://www.jgi.doe.gov/spathaspora/)
Data table ID Nprobes SPOT_ID 45235
6
45235
51695
8
51695
54472
13
54472
54061
9
54061
53088
24
53088
57388
5
57388
46663
11
46663
40325
6
40325
45491
7
45491
42541
21
42541
57305
19
57305
42878
5
42878
43488
32
43488
44284
26
44284
52682
9
52682
41685
12
41685
54847
18
54847
48868
38
48868
42969
13
42969
52863
38
52863
5726 82 Kbytes .Supplementary file Size Download File type/resource GPL11079_090803_SP_DW_EXP.ndf.gz
16.3 Mb
(ftp) (http) NDF
GPL11079_SpasProbeMapping.txt.gz
260.9 Kb
(ftp) (http) TXT
