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| Status |
Public on Mar 31, 2011 |
| Title |
Agilent custom Leishmania microarray v2 |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Leishmania |
| Manufacturer |
Agilent |
| Manufacture protocol |
Agilent's 60-mer SurePrint technology
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| |
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| Description |
Multispecies Leishmania microarray
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| Submission date |
Dec 17, 2010 |
| Last update date |
Mar 31, 2011 |
| Contact name |
Frederic Raymond |
| Organization name |
Université Laval
|
| Department |
École de nutrition
|
| Lab |
INAF
|
| Street address |
2440 Bd Hochelaga Suite 1710
|
| City |
Quebec City |
| State/province |
Quebec |
| ZIP/Postal code |
G1V 0A6 |
| Country |
Canada |
| |
|
| Samples (48)
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GSM642329, GSM642330, GSM642331, GSM642332, GSM642333, GSM671853
GSM671854, GSM671855, GSM671856, GSM671857, GSM671858, GSM671859, GSM671860, GSM671861, GSM671862, GSM671863, GSM671864, GSM948775, GSM948776, GSM948777, GSM1023549, GSM1023550, GSM1023551, GSM1023552, GSM1023553, GSM1023554, GSM1035115, GSM1035116, GSM1035117, GSM1035118, GSM1035119, GSM1035120, GSM1116923, GSM1116924, GSM1116925, GSM1116926, GSM1116927, GSM1116928, GSM1116929, GSM1116930, GSM1116931, GSM1116932, GSM1207765, GSM1207766, GSM1207767, GSM1207768, GSM1207769, GSM1207770
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| Series (9)
|
| GSE26159 |
GENE EXPRESSION PROFILING AND MOLECULAR CHARACTERIZATION OF ANTIMONY RESISTANCE IN Leishmania amazonensis |
| GSE27184 |
Comparative genomic hybridization of strains of Leishmania infantum, Leishmania major and Leishmania tarentolae |
| GSE38731 |
Leishmania major: Sir2rp3 overexpressor vs wild-type |
| GSE41750 |
Comparative Genomic Hybridization of Leishmania major SbIII resistant mutants and L. major WT |
| GSE42195 |
Leishmania donovani amastigotes: Nelfinavir (NFV)-sensitive (control) vs Nelfinavir-resistant [Comparative Genomic Hybridization (DNA) profiling] |
| GSE42196 |
Leishmania donovani amastigotes: Nelfinavir (NFV)-sensitive (control) vs Nelfinavir-resistant [RNA expression profiling] |
| GSE42197 |
Leishmania donovani amastigotes: Nelfinavir (NFV)-sensitive (control) vs Nelfinavir-resistant |
| GSE45866 |
Comparative genomic hybridization of strains of Leishmania infantum wild-type and five independent 5-fluorouracil resistant mutant. |
| GSE49825 |
Leishmania infantum: Alba20 null mutant Vs wild type |
|
| Data table header descriptions |
| ID |
FeatureNumber |
| ProbeName |
ProbeName |
| ProbeUID |
ProbeUID from Agilent microarray |
| SEQUENCE |
Sequence of the probe |
| GeneID.LmjF |
Leishmania major gene with the best hybridization to probe |
| ORF |
ORF Name |
| GeneID.LinJ |
Leishmania infantum gene with the best hybridization to probe |
| GeneID.LbrM |
Leishmania braziliensis gene with the best hybridization to probe |
| GeneID.LtaP |
Leishmania tarentolae gene with the best hybridization to probe |
| Identity.LmjF |
Nucleotide identity of probe sequence with the best hybridization in Leishmania major |
| Identity.LinJ |
Nucleotide identity of probe sequence with the best hybridization in Leishmania infantum |
| Identity.LbrM |
Nucleotide identity of probe sequence with the best hybridization in Leishmania braziliensis |
| Identity.LtaP |
Nucleotide identity of probe sequence with the best hybridization in Leishmania tarentolae |
| SPOT_ID |
spot identifier |
| Data table |
| ID |
ProbeName |
ProbeUID |
SEQUENCE |
GeneID.LmjF |
ORF |
GeneID.LinJ |
GeneID.LbrM |
GeneID.LtaP |
Identity.LmjF |
Identity.LinJ |
Identity.LbrM |
Identity.LtaP |
SPOT_ID |
| 1 |
GE_BrightCorner |
0 |
|
NA |
|
NA |
NA |
NA |
NA |
NA |
NA |
NA |
--GE_BrightCorner |
| 2 |
DarkCorner |
1 |
|
NA |
|
NA |
NA |
NA |
NA |
NA |
NA |
NA |
--DarkCorner |
| 3 |
DarkCorner |
1 |
|
NA |
|
NA |
NA |
NA |
NA |
NA |
NA |
NA |
--DarkCorner |
| 4 |
LinJ17_V3.0440 |
3 |
CCTCACCGGAACCCATCGCGCTGCTCTTCAAGATTGGATGCTTGGACGACACAACGCACC |
LmjF17.0390 |
LmjF17.0390 |
LinJ17_V3.0440 |
None |
None |
60 |
60 |
0 |
0 |
|
| 6 |
LinJ36_V3.3300 |
4 |
TATTCGACAGCGCAAGTCGGAGCGGCACAAGGAGGTGCTGCGGAAGCTCAGCCAGAATGG |
LmjF36.3150 |
LmjF36.3150 |
LinJ36_V3.3300 |
None |
None |
59 |
60 |
0 |
0 |
|
| 8 |
LinJ26_V3.2160 |
7 |
TGGCTAGGCGAGTCGGACGAGGGGTTTGAGCTGGCCGTGGATGGTTTCCAGCGGTACGGT |
LmjF26.2150 |
LmjF26.2150 |
LinJ26_V3.2160 |
None |
LtaP26.2200 |
60 |
60 |
0 |
55 |
|
| 10 |
LinJ34_V3.2630 |
10 |
CGCAAGCGCCTGAACAAGTCAGTAAAGTGGGCCTCGAAGCTGCACGAGGTGGCCAAGGAG |
LmjF34.2790 |
LmjF34.2790 |
LinJ34_V3.2630 |
LbrM20_V2.2350 |
LtaP34.2970 |
59 |
60 |
52 |
56 |
|
| 14 |
LinJ34_V3.2140 |
12 |
AGGAGGAGCTGGCTTCCTATCTTGTGCCGCGCTTGGCTACATATGCGCCGTCCACCTCAC |
LmjF34.2370 |
LmjF34.2370 |
LinJ34_V3.2140 |
None |
None |
59 |
60 |
0 |
0 |
|
| 15 |
LinJ33_V3.2410 |
13 |
CCCACCCTACACGCATTGGAGGTGTGTTGCATACTACCCGCGACGCTGGCACCACGATGC |
LmjF33.2280 |
LmjF33.2280 |
LinJ33_V3.2410 |
LbrM33_V2.2570 |
None |
56 |
60 |
56 |
0 |
|
| 17 |
LinJ31_V3.1650 |
15 |
ATGACTGTCTGGGCAATCGGAACAACGAATCGTGCCAAAGCAGAGAGCGTCGTCACAGTT |
LmjF31.1620 |
LmjF31.1620 |
LinJ31_V3.1650 |
None |
LtaP31.2150 |
60 |
60 |
0 |
56 |
|
| 19 |
LinJ25_V3.2240 |
17 |
GTTCAACAACGATGCGCTCAAGTACGCGCTCCCCATCATTCCGGTGCGCCAAACGGAGAA |
LmjF25.2150 |
LmjF25.2150 |
LinJ25_V3.2240 |
LbrM25_V2.1720 |
LtaP25.2300 |
59 |
60 |
57 |
50 |
|
| 22 |
LinJ19_V3.1380 |
21 |
CGTGGTCTGGTGTATCCGTGGCTGCGTGCACAGCTCTGGTCTGTTGGAATGGAGTCCTGC |
LmjF19.1350 |
LmjF19.1350 |
LinJ19_V3.1380 |
None |
None |
59 |
60 |
0 |
0 |
|
| 24 |
LinJ08_V3.0270 |
23 |
ACACGGATGAGCAGCGGGCTGCGCGTGAGAAGCGCGAAAGGGCCAAGACGTACGCCAGGC |
LmjF08.0260 |
LmjF08.0260 |
LinJ08_V3.0270 |
LbrM08_V2.0270 |
LtaP08.0270 |
60 |
60 |
50 |
51 |
|
| 26 |
LinJ25_V3.0780 |
26 |
ACGACACCCTCAAGGCCGCCGAAGCCCTCACGCCGGAAGAAACGGAAGAGCTGAGCCAGT |
LmjF25.0750 |
LmjF25.0750 |
LinJ25_V3.0780 |
None |
None |
59 |
60 |
0 |
0 |
|
| 28 |
LinJ33_V3.0490 |
28 |
GCACACGCGCACACCAACAACTTGATCATGGATGCCGGTTCTGTCTTGGACAACCTCCTC |
LmjF33.0480 |
LmjF33.0480 |
LinJ33_V3.0490 |
None |
None |
59 |
60 |
0 |
0 |
|
| 30 |
LinJ23_V3.0050 |
29 |
AGCTAAACACGCAGGTTGTTGCGGTGTCGTGCGATTCGGTGTACTCTCACCTGGCGTGGG |
LmjF23.0040 |
LmjF23.0040 |
LinJ23_V3.0050 |
None |
None |
59 |
60 |
0 |
0 |
|
| 31 |
LinJ34_V3.0310 |
31 |
GACCCGATGGCTGTACTCTGGCAGCATGAACGGCACGTGCTGGTGTTGACACGGGCCGGC |
LmjF34.0290 |
LmjF34.0290 |
LinJ34_V3.0310 |
None |
LtaP34.0870 |
60 |
60 |
0 |
57 |
|
| 32 |
LinJ36_V3.3370 |
32 |
ACGAGCGCGTGGCATCTCTCACGGCGGACCTTGCCACGGCACAGAGCAATCTGGCGGAGG |
LmjF36.3220 |
LmjF36.3220 |
LinJ36_V3.3370 |
None |
None |
59 |
60 |
0 |
0 |
|
| 34 |
LinJ13_V3.1470 |
35 |
CGGTGGACGTACTGCTGCGCGACGAACTCCCCTGCCCGAGCCTTAAAAGTCTGAACCTCT |
LmjF13.1430 |
LmjF13.1430 |
LinJ13_V3.1470 |
LbrM13_V2.1200 |
None |
60 |
60 |
55 |
0 |
|
| 35 |
LinJ21_V3.2160 |
36 |
ACAACTCGTACTCCGCGTTTGCGGGCTACTTGCACTTTGGCGCTGGTCTGGCCGCCGGCC |
LmjF21.1800 |
LmjF21.1800 |
LinJ21_V3.2170 |
LbrM33_V2.0860 |
None |
59 |
60 |
56 |
58 |
|
Total number of rows: 9709
Table truncated, full table size 1373 Kbytes.
| Supplementary data files not provided |
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