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Platform GPL1321 Query DataSets for GPL1321
Status Public on Jul 01, 2004
Title [Plasmodium_Anopheles] Affymetrix Plasmodium/Anopheles Genome Array
Technology type in situ oligonucleotide
Distribution commercial
Organisms Plasmodium falciparum; Anopheles gambiae
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site

The GeneChip Plasmodium/Anopheles Genome Array includes probe sets to over 4,300 Plasmodium falciparam transcripts and approximately 14,900 Anopheles gambiae transcripts. The Plasmodium/Anopheles Genome Array was developed in collaboration with the Malaria Research Institute at the Johns Hopkins Bloomberg School of Public Health.
P. falciparam sequence information for this array was collected primarily from PlasmodB (version 4.1, June 2003) and augmented with sequence information from GenBank® and dbEST. Sequence information for A. gambiae was drawn primarily from Ensembl (Build 2, 2003) and augmented with sequence information from GenBank and dbEST.
Note: The DsRed probe set is provided with permission from BD Biosciences, and BD Biosciences grants users a limited license to utilize this probe set only on the Affymetrix array. Other uses of the probe set, or other DsRed sequence or sequences, require a license from BD Biosciences.
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www.ncbi.nlm.nih.gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
Oct 12, 2009: annotation table updated with netaffx build 32
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=plasmodium
http://www.affymetrix.com/analysis/index.affx
Submission date Jul 01, 2004
Last update date Jan 24, 2013
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (523) GSM172187, GSM172188, GSM172189, GSM172190, GSM172191, GSM172192 
Series (30)
GSE7149 A Microarray-based Analysis of Transcriptional Compartmentalization in the Alimentary Canal of Anopheles gambiae
GSE8822 Anopheles gambiae genome-wide gene expression in response to bloodmeal
GSE9642 The salivary transcriptome of Anopheles gambiae (Diptera: Culicidae) larvae: A microarrray-based study

Data table header descriptions
ID Affymetrix Probe Set ID
GB_LIST GenBank Accession Number
ORF gene name
ORGANISM
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description GenBank description associated with the representative public identifier. Blank for some probe sets.
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
EntrezGeneId Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
SPOT_ID

Data table
ID GB_LIST ORF ORGANISM Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol EntrezGeneId RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function SPOT_ID
AB016617.1_RC_s_at AB016617.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF002237.1_at AF002237.1 Anopheles gambiae 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008978.1_RC_at AF008978.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008978.1_x_at AF008978.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008979.1_at AF008979.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008979.1_RC_at AF008979.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008979.1_x_at AF008979.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008980.1_at AF008980.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008980.1_RC_at AF008980.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008980.1_RC_x_at AF008980.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008980.1_x_at AF008980.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008981.1_RC_at AF008981.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008981.1_x_at AF008981.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008982.1_at AF008982.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008982.1_RC_at AF008982.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008983.1_at AF008983.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008983.1_x_at AF008983.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008984.1_at AF008984.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008984.1_RC_at AF008984.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---
AF008985.1_at AF008985.1 Plasmodium falciparum 22-Jun-11 --- --- --- --- --- --- --- --- --- ---

Total number of rows: 22769

Table truncated, full table size 10450 Kbytes.






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