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Platform GPL13706 Query DataSets for GPL13706
Status Public on Jun 10, 2011
Title [Bovine] Affymetrix Bovine Genome Array [CDF: BovineEndo_Ensembl57_CDF]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Bos taurus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description This identical to GPL2112 but a custom CDF environment was used to extract data (CDF: BovineEndo_Ensembl57).
 
Submission date Jun 09, 2011
Last update date Jun 10, 2011
Contact name aideen patricia killeen
E-mail(s) aideen.killeen@teagasc.ie
Phone 0469061118
Fax 0469026154
Organization name Teagasc
Department Animal and Bioscience Research Department
Lab Molecular Lab
Street address Dunsany
City Grange
State/province Co. Meath
ZIP/Postal code 001
Country Ireland
 
Samples (42) GSM739565, GSM739566, GSM739567, GSM739568, GSM739569, GSM739570 
Series (3)
GSE29853 Expression data from early luteal bovine endometrium
GSE35212 Expression data from day 17 bovine endometrium
GSE50091 Expression data from late-luteal bovine endometrium
Relations
Alternative to GPL2112 (Alternative CDF[official])

Data table header descriptions
ID Hybrid Annotation from CDF file
GB_ACC RefSeq DNA ID, GenBank Accession number
GB_ACC EMBL (Genbank) ID
EntrezGene ID
Associated Name
Ensembl Gene ID
SPOT_ID

Data table
ID GB_ACC GB_ACC EntrezGene ID Associated Name Ensembl Gene ID SPOT_ID
280677_atd NM_001040469 AF110279 280677 CO3_BOVIN ENSBTAG00000017280
280682_atd NM_001044721 DQ403140 280682 CISY_BOVIN ENSBTAG00000004371
280685_atd NM_173877 V00135 280685 THRB_BOVIN ENSBTAG00000007148
Bt.4106.1.S1_at NM_173878 S74147 280686 TF_BOVIN ENSBTAG00000007101
280687_atd NM_173879 280687 F5 ENSBTAG00000017722
280688_atm_m NM_001103220 AF394598 280688 FA9_BOVIN ENSBTAG00000004003
280691_atd NM_173880 AF001288 280691 H4_BOVIN ENSBTAG00000039812
280692_atd NM_001040470 AJ271156 280692 HPT_BOVIN ENSBTAG00000006354
280695_atd NM_173881 AY197338 280695 MYG_BOVIN ENSBTAG00000005333
280699_atd NM_173882 X63129 280699 A1AT_BOVIN ENSBTAG00000018843
280701_atd NM_001075118 M95283 280701 IPYR_BOVIN ENSBTAG00000007836
280705_atd NM_177484 U02564 280705 TRFE_BOVIN ENSBTAG00000007273
280706_atd NM_173883 X14324 280706 THYG_BOVIN ENSBTAG00000007823
280707_atd NM_173884 AF510493 280707 TY3H_BOVIN ENSBTAG00000026768
280710_atm_m NM_173885 280710 ACK1_BOVIN ENSBTAG00000021364
280711_atd NM_173886 X68212 280711 P79343_BOVIN ENSBTAG00000010182
280712_atd NM_173887 BC146169 280712 ADA_BOVIN ENSBTAG00000005280
280713_atd NM_173888 AJ001613 280713 ADML_BOVIN ENSBTAG00000021048
280714_atd AY078127 280714 Q8SQA5_BOVIN ENSBTAG00000007746
280715_atd NM_001013582 BT020951 280715 KAD1_BOVIN ENSBTAG00000006305

Total number of rows: 20583

Table truncated, full table size 1118 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL13706_bovinedaiplusv6.cdf.gz 6.9 Mb (ftp)(http) CDF
GPL13706_bovinedaiplusv6.cdf.txt.gz 2.5 Mb (ftp)(http) TXT

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