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Platform GPL14726 Query DataSets for GPL14726
Status Public on Oct 14, 2011
Title A-UMCU-M35K-1.0
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Mus musculus
Manufacturer Holstege Lab, UMC Utrecht, The Netherlands
Manufacture protocol 1. 70-mers from 384-well plates are printed with a BioRobotics MicroGridII spotter in an environment controlled room
2. Humidity is 50% ± 3%
3. Temperature is 18C in the spotter
4. Quill Pins type MicroSpot2500 (BioRobotics) are used for spotting
5. The printed slides are treated with UV-light after spotting by using a Stratalinker2400 from Stratagene: Energy 2400 mJ, Time 10 minutes (settings 23744 x 100 uJoule)
6. The Stratalinker works with 254 nm UV-light and irradiates the slides with circa 4000 uWatt/cm2
7. After UV-crosslinking, slides are stored in a desiccator-cabinet
Support glass
 
 
Web link http://microarrays.holstegelab.nl
Contributor(s) van Leenen d, Groot Koerkamp M, Lijnzaad P, Bakker L, Sluiters E, van Hooff S, Kemmeren P, Holstege F
Submission date Oct 12, 2011
Last update date Oct 14, 2011
Contact name Marian Groot Koerkamp
Organization name Princess Maxima Center for Pediatric Oncology
Department Research
Lab Drostlab
Street address Heidelberglaan 25
City Utrecht
State/province Utrecht
ZIP/Postal code 3584 CS
Country Netherlands
 
Samples (117) GSM815839, GSM815840, GSM815841, GSM815842, GSM815843, GSM815844 
Series (6)
GSE32940 FJ001: Retinoic acid-dependent and -independent gene-regulatory pathways of Pitx3 in meso-diencephalic dopaminergic neurons
GSE35701 CP001: Modulation of glutamine metabolism by the PI3K-PKB/c-akt-FOXO network regulates autophagy
GSE35703 CP003: Modulation of glutamine metabolism by the PI3K-PKB/c-akt-FOXO network regulates autophagy

Data table header descriptions
ID primary identifier
METACOLUMN metagrid column position
METAROW metagrid row position
COLUMN grid column position
ROW grid row position
PROBE_ID alternative spot identifier
REPORTER_GROUP class the reporter belongs to, e.g. controls or genes
SEQUENCE nucleotide sequence
SYSTEMATIC_NAME systematic name of the gene
ORF ORF Name
GENE_SYMBOL Gene symbol for the gene
ORGANISM organism
PRIMARY_DB primay external database identifier, format is <extdb>:<identifier>
SPOT_ID

Data table
ID METACOLUMN METAROW COLUMN ROW PROBE_ID REPORTER_GROUP SEQUENCE SYSTEMATIC_NAME ORF GENE_SYMBOL ORGANISM PRIMARY_DB SPOT_ID
1 1 1 1 1 ECAA000001 ex_control TTTATCGGCTGTAATAGAGCTGGTGCCGTTTTTAGATAAACAGAAGGCAAAAGAAACCCACCATTCAATA
2 1 1 2 1 MMAA300021939 gene GTTTTTTACTTTTTCCAGACAAGTTCTCAAGTATCCCAGGGTGGCTTCCTGACTCTCTCGAGTAGCCGAG ENSMUSG00000051294 ENSMUSG00000051294 AC159539.1 Mus musculus ensembl:ENSMUSG00000051294
3 1 1 3 1 MMAA200003062 gene TCTTCTCCAGGAATGTCTGGCCACAGGCAAGGCCATGACTCACTAGAGCATGATGAGCTTCGAGAGATA ENSMUSG00000051316 ENSMUSG00000051316 Taf7 Mus musculus ensembl:ENSMUSG00000051316
4 1 1 4 1 MMAA300021902 gene CAGAGCTTCCCCAGAGGGAACATGCTGGATAATTTAAAATCTCTGAGGTTCTTGAGGAAAAGGGGGCTTT ENSMUSG00000086128 ENSMUSG00000086128 AC102156.2 Mus musculus ensembl:ENSMUSG00000086128
5 1 1 5 1 MMAA300021921 gene TCCTTTTGGGGTATTATACTCGGTTGCCGGTTGCCATGGAAGTGAGGGCTGGCTGATTCACACAGGAGGG ENSMUSG00000085759 ENSMUSG00000085759 RP23-21E23.2 Mus musculus ensembl:ENSMUSG00000085759
6 1 1 6 1 MMAA300021945 gene TCCTCCAGATGGAGACTGACTCAGCCAAGGGCAGAGAGAAGGAAGAGTACTTCATCTAATGCTTCCCAGG ENSMUSG00000053559 ENSMUSG00000053559 Smagp Mus musculus ensembl:ENSMUSG00000053559
7 1 1 7 1 ECAA000006 ex_control GACAGGAAAAGACACTTCTGTCATTGTCAGCTTAATTGTATTAGCTGCTTTGTTATTTTCCTTAAGGGCT
8 1 1 8 1 MMAA300021966 gene CACCCATTCTGGTGTGTTTGGATGGGTGGGAGCCTCTAAGAATCTTGTCTCACCAGCTGATGAGGATGAG Mus musculus
9 1 1 9 1 MMAA300022224 gene ACACTCACGAGCTTCTTCCGTTTCCTAGGTTTGCCTGGCTTGTTTTCCTTCTGCTTCTTAGGGCCTCGTT Mus musculus
10 1 1 10 1 MMAA300022246 gene GAAGAACCTCTTCCTAAAAAGGTCCGACTGAGTGAAACAGACTTCAAAGTTATGGCACGGGATGAGTTAA ENSMUSG00000061897 ENSMUSG00000061897 RP23-285J17.1 Mus musculus ensembl:ENSMUSG00000061897
11 1 1 11 1 MMAA300022266 gene ATGGTGGGAGTGTATGTGATGGGGCTTGTGGGTGCCATGGCACATACTGGTAGCATGCTAAGTCTGACCT ENSMUSG00000059275 ENSMUSG00000059275 Olfr888 Mus musculus ensembl:ENSMUSG00000059275
12 1 1 12 1 MMAA300022288 gene TGCGGCAACATCCTCTTGTTGGGGAATGCAGCTTGCAGCCGTTTACACTGCACTGGGTAGAAGTTATCTA ENSMUSG00000051674 ENSMUSG00000051674 Dcun1d4 Mus musculus ensembl:ENSMUSG00000051674
13 1 1 13 1 MMAA300022230 gene GGACATGGTTAGTTTCCTGACTGCAGTTTCCTTTGCCTGTTTCACTGGGATTGTCATCTCCTATGTCCAC ENSMUSG00000051611 ENSMUSG00000051611 Olfr112 Mus musculus ensembl:ENSMUSG00000051611
14 1 1 14 1 ECAA000006 ex_control GACAGGAAAAGACACTTCTGTCATTGTCAGCTTAATTGTATTAGCTGCTTTGTTATTTTCCTTAAGGGCT
15 1 1 15 1 MMAA300022251 gene TGAGATGCAGATAATTGAGCAGGAAACCCCGCTGAGTGCGAAATCCTCCCGCCTTGAGTCCAGTGAAGCA ENSMUSG00000083443 ENSMUSG00000083443 RP24-350P11.2 Mus musculus ensembl:ENSMUSG00000083443
16 1 1 16 1 MMAA300022272 gene GGAAGTATGCGGCGTAGAGTATGTCCCCCTGATCCCAACTCTGAGCAGAGCCACGAGGCTGTGAAAGATG Mus musculus
17 1 1 17 1 MMAA300022293 gene GATATTTACCTCCATGTTCCCATGTACCTCTTGCTTGAGCAGCTATCTCTCATGGACCTTCTTCTCGCCT ENSMUSG00000051680 ENSMUSG00000051680 Olfr693 Mus musculus ensembl:ENSMUSG00000051680
18 1 1 18 1 QCMMAA0000007 qc_control GGCCTGTGAGAGGCATCTCTATCAAGTTGCAGGAAGAAGAGAGAGAGAGGAGAGATAACTACGTTCCTGA
19 1 1 19 1 QCMMAA0000007 qc_control GGCCTGTGAGAGGCATCTCTATCAAGTTGCAGGAAGAAGAGAGAGAGAGGAGAGATAACTACGTTCCTGA
20 1 1 20 1 QCMMAA0000007 qc_control GGCCTGTGAGAGGCATCTCTATCAAGTTGCAGGAAGAAGAGAGAGAGAGGAGAGATAACTACGTTCCTGA

Total number of rows: 34992

Table truncated, full table size 6090 Kbytes.




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