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Status |
Public on Mar 01, 2012 |
Title |
Affymetrix GeneChip Rat Genome 230 2.0 Array [custom CDF: Rn230_Rn_UG_v9] |
Technology type |
in situ oligonucleotide |
Distribution |
commercial |
Organism |
Rattus norvegicus |
Manufacturer |
Affymetrix |
Manufacture protocol |
see manufacturer's web site
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Description |
A Custom CDF Version 9 with Unigene based gene definitions was used to annotate the arrays
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Submission date |
Dec 07, 2011 |
Last update date |
Jan 17, 2013 |
Contact name |
Alexander Paliege |
E-mail(s) |
alexander.paliege@charite.de
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Organization name |
Charité
|
Department |
Anatomy
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Lab |
Institut für Vegetative Anatomie
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Street address |
Philippstr. 12
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City |
Berlin |
ZIP/Postal code |
10115 |
Country |
Germany |
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Samples (6) |
GSM844872, GSM844873, GSM844874, GSM844875, GSM844876, GSM844877 |
Series (1) |
GSE34225 |
Effect of dDAVP on outer medullary gene expression in Brattleboro rats |
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Relations |
Alternative to |
GPL1355 (Alternative CDF [official]) |
Data table header descriptions |
ID |
|
AffyID |
|
Transcript ID(Array Design) |
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GB_ACC |
GenBank Accession Number |
Archival UniGene Cluster |
|
UniGeneID |
Unigene ID |
Chr |
|
Chr Strand |
|
Chr From |
|
Probe X |
|
Probe Y |
|
Gene Title |
|
Gene Symbol |
|
Chromosomal Location |
|
Unigene Cluster Type |
|
Ensembl |
|
Entrez Gene |
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SwissProt |
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SPOT_ID |
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Data table |
ID |
AffyID |
Transcript ID(Array Design) |
GB_ACC |
Archival UniGene Cluster |
UniGeneID |
Chr |
Chr Strand |
Chr From |
Probe X |
Probe Y |
Gene Title |
Gene Symbol |
Chromosomal Location |
Unigene Cluster Type |
Ensembl |
Entrez Gene |
SwissProt |
SPOT_ID |
Rn.1_at |
1383935_at |
Rn.1.1 |
AW252428 |
Rn.1 |
Rn.1 |
6 |
- |
125000000 |
589 |
23 |
Transcribed locus |
--- |
--- |
est |
--- |
0 |
--- |
|
Rn.10_at |
1369943_at |
Rn.10.1 |
NM_019386 |
Rn.10 |
Rn.10 |
3 |
- |
149000000 |
607 |
171 |
"transglutaminase 2, C polypeptide" |
Tgm2 |
chr3q42 |
full length |
ENSRNOG00000012956 |
56083 |
Q6P6R6 /// Q9WVJ6 |
|
Rn.1000_at |
1367657_at |
Rn.1000.1 |
NM_017258 |
Rn.1000 |
Rn.1000 |
7 |
+ |
34030970 |
261 |
575 |
"B-cell translocation gene 1, anti-proliferative" |
Btg1 |
chr7q13 |
full length |
ENSRNOG00000004284 |
29618 |
Q4FZT2 /// Q63073 |
|
Rn.10000_at |
1386935_at |
Rn.10000.1 |
NM_024388 |
Rn.10000 |
Rn.10000 |
7 |
+ |
140000000 |
140 |
159 |
"nuclear receptor subfamily 4, group A, member 1" |
Nr4a1 |
chr7q36 |
full length |
ENSRNOG00000007607 |
79240 |
P22829 |
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Rn.100005_at |
1376248_at |
Rn.12882.1 |
BM390571 |
Rn.12882 |
Rn.100005 |
1 |
- |
96197902 |
436 |
351 |
"sulfotransferase family, cytosolic, 2B, member 1 (predicted)" |
Sult2b1_predicted |
chr1q22 |
full length |
ENSRNOG00000021046 |
292915 |
Q29YR5 |
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Rn.100014_at |
1383544_at |
Rn.32047.1 |
AI385372 |
Rn.32047 |
Rn.198399 |
18 |
- |
30880153 |
165 |
383 |
FCH and double SH3 domains 1 (predicted) |
Fchsd1_predicted |
chr18p11 |
--- |
--- |
307482 |
--- |
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Rn.10002_at |
1368270_at |
Rn.10002.1 |
NM_012907 |
Rn.10002 |
Rn.10002 |
4 |
- |
159000000 |
571 |
151 |
apolipoprotein B editing complex 1 |
Apobec1 |
chr4q42 |
full length |
ENSRNOG00000015411 |
25383 |
P38483 |
|
Rn.100021_at |
1372094_at |
Rn.16879.1 |
BG380556 |
Rn.16879 |
Rn.100021 |
1 |
- |
83404780 |
620 |
727 |
suppressor of Ty 5 homolog (S. cerevisiae) |
Supt5h |
chr1q21 |
--- |
ENSRNOG00000032034 |
308472 |
Q63403 |
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Rn.100022_at |
1376849_at |
Rn.40620.1 |
BM384872 |
Rn.40620 |
Rn.100022 |
5 |
+ |
156000000 |
402 |
661 |
ubiquitin specific protease 48 |
Usp48 |
chr5q36 |
full length |
ENSRNOG00000013602 |
362636 |
Q76LT8 |
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Rn.100042_at |
1372048_at |
Rn.11964.1 |
BI276946 |
Rn.11964 |
Rn.100042 |
4 |
- |
123000000 |
326 |
633 |
podocalyxin-like 2 (predicted) |
Podxl2_predicted |
chr4q34 |
--- |
ENSRNOG00000016255 |
297433 |
--- |
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Rn.100050_at |
1383205_at |
Rn.2966.1 |
BI288833 |
Rn.2966 |
Rn.100050 |
1 |
- |
53084141 |
712 |
271 |
"dapper homolog 2, antagonist of beta-catenin (xenopus) (predicted)" |
Dact2_predicted |
chr1q12 |
--- |
--- |
308212 |
--- |
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Rn.10006_at |
1368627_at |
Rn.10006.1 |
NM_031546 |
Rn.10006 |
Rn.10006 |
X |
- |
13037202 |
189 |
563 |
regucalcin |
Rgn |
chrXq11-q12 |
full length |
ENSRNOG00000007949 |
25106 |
Q03336 |
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Rn.100064_at |
1388858_at |
Rn.8205.1 |
BI283843 |
Rn.8205 |
Rn.100064 |
10 |
+ |
47096103 |
458 |
297 |
mitogen activated protein kinase kinase 3 |
Map2k3 |
chr10q22 |
--- |
ENSRNOG00000006612 |
303200 |
Q498S1 |
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Rn.10008_at |
1368697_at |
Rn.10008.1 |
NM_017098 |
Rn.10008 |
Rn.10008 |
10 |
- |
28694773 |
230 |
747 |
"fatty acid binding protein 6, ileal (gastrotropin)" |
Fabp6 |
chr10q21 |
full length |
ENSRNOG00000003902 |
25440 |
P80020 |
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Rn.10009_at |
1398267_at |
Rn.10009.1 |
NM_053537 |
Rn.10009 |
Rn.10009 |
9 |
+ |
9934249 |
587 |
95 |
"solute carrier family 22 (organic anion transporter), member 7" |
Slc22a7 |
chr9q12 |
full length |
--- |
89776 |
Q5RLM2 /// Q63314 |
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Rn.100101_at |
1385837_at |
Rn.9043.1 |
AA956624 |
Rn.9043 |
Rn.100101 |
3 |
+ |
57362291 |
464 |
213 |
homeo box D3 |
Hoxd3 |
chr3q23 |
--- |
ENSRNOG00000001577 |
288152 |
P18867 |
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Rn.100109_at |
1371584_at |
Rn.17856.1 |
BM390843 |
Rn.17856 |
Rn.100109 |
3 |
- |
146000000 |
563 |
709 |
"transient receptor potential cation channel, subfamily C, member 4 associated protein" |
Trpc4ap |
chr3q42 |
--- |
ENSRNOG00000019152 |
362247 |
Q3B8Q5 /// Q5M940 |
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Rn.10011_at |
1387177_at |
Rn.10011.1 |
NM_017238 |
Rn.10011 |
Rn.10011 |
6 |
+ |
143000000 |
697 |
419 |
vasoactive intestinal peptide receptor 2 |
Vipr2 |
chr6q33 |
full length |
ENSRNOG00000004317 |
29555 |
P35000 |
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Rn.10012_at |
1369374_at |
Rn.10012.1 |
NM_013114 |
Rn.10012 |
Rn.10012 |
13 |
+ |
79898571 |
146 |
173 |
"selectin, platelet" |
Selp |
chr13q22 |
full length |
--- |
25651 |
P98106 /// Q3MID1 |
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Rn.100120_at |
1369813_at |
Rn.10147.1 |
U39320 |
Rn.10147 |
Rn.100120 |
3 |
+ |
171000000 |
261 |
579 |
"DnaJ (Hsp40) homolog, subfamily C, member 5" |
Dnajc5 |
chr3q43 |
full length |
ENSRNOG00000015202 |
79130 |
P60905 |
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Total number of rows: 16944
Table truncated, full table size 2756 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GPL14976_Rn230_Rn_UG.cdf.gz |
5.9 Mb |
(ftp)(http) |
CDF |
GPL14976_Rn230_Rn_UG.cdf.txt.gz |
2.1 Mb |
(ftp)(http) |
TXT |
GPL14976_Rn230_Rn_UG.psi.gz |
92.7 Kb |
(ftp)(http) |
PSI |
GPL14976_Rn230_Rn_UG_desc.txt.gz |
204.0 Kb |
(ftp)(http) |
TXT |
GPL14976_Rn230_Rn_UG_mapping.txt.gz |
1.7 Mb |
(ftp)(http) |
TXT |
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