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Platform GPL14976 Query DataSets for GPL14976
Status Public on Mar 01, 2012
Title Affymetrix GeneChip Rat Genome 230 2.0 Array [custom CDF: Rn230_Rn_UG_v9]
Technology type in situ oligonucleotide
Distribution commercial
Organism Rattus norvegicus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description A Custom CDF Version 9 with Unigene based gene definitions was used to annotate the arrays
 
Submission date Dec 07, 2011
Last update date Jan 17, 2013
Contact name Alexander Paliege
E-mail(s) alexander.paliege@charite.de
Organization name Charité
Department Anatomy
Lab Institut für Vegetative Anatomie
Street address Philippstr. 12
City Berlin
ZIP/Postal code 10115
Country Germany
 
Samples (6) GSM844872, GSM844873, GSM844874, GSM844875, GSM844876, GSM844877
Series (1)
GSE34225 Effect of dDAVP on outer medullary gene expression in Brattleboro rats
Relations
Alternative to GPL1355 (Alternative CDF [official])

Data table header descriptions
ID
AffyID
Transcript ID(Array Design)
GB_ACC GenBank Accession Number
Archival UniGene Cluster
UniGeneID Unigene ID
Chr
Chr Strand
Chr From
Probe X
Probe Y
Gene Title
Gene Symbol
Chromosomal Location
Unigene Cluster Type
Ensembl
Entrez Gene
SwissProt
SPOT_ID

Data table
ID AffyID Transcript ID(Array Design) GB_ACC Archival UniGene Cluster UniGeneID Chr Chr Strand Chr From Probe X Probe Y Gene Title Gene Symbol Chromosomal Location Unigene Cluster Type Ensembl Entrez Gene SwissProt SPOT_ID
Rn.1_at 1383935_at Rn.1.1 AW252428 Rn.1 Rn.1 6 - 125000000 589 23 Transcribed locus --- --- est --- 0 ---
Rn.10_at 1369943_at Rn.10.1 NM_019386 Rn.10 Rn.10 3 - 149000000 607 171 "transglutaminase 2, C polypeptide" Tgm2 chr3q42 full length ENSRNOG00000012956 56083 Q6P6R6 /// Q9WVJ6
Rn.1000_at 1367657_at Rn.1000.1 NM_017258 Rn.1000 Rn.1000 7 + 34030970 261 575 "B-cell translocation gene 1, anti-proliferative" Btg1 chr7q13 full length ENSRNOG00000004284 29618 Q4FZT2 /// Q63073
Rn.10000_at 1386935_at Rn.10000.1 NM_024388 Rn.10000 Rn.10000 7 + 140000000 140 159 "nuclear receptor subfamily 4, group A, member 1" Nr4a1 chr7q36 full length ENSRNOG00000007607 79240 P22829
Rn.100005_at 1376248_at Rn.12882.1 BM390571 Rn.12882 Rn.100005 1 - 96197902 436 351 "sulfotransferase family, cytosolic, 2B, member 1 (predicted)" Sult2b1_predicted chr1q22 full length ENSRNOG00000021046 292915 Q29YR5
Rn.100014_at 1383544_at Rn.32047.1 AI385372 Rn.32047 Rn.198399 18 - 30880153 165 383 FCH and double SH3 domains 1 (predicted) Fchsd1_predicted chr18p11 --- --- 307482 ---
Rn.10002_at 1368270_at Rn.10002.1 NM_012907 Rn.10002 Rn.10002 4 - 159000000 571 151 apolipoprotein B editing complex 1 Apobec1 chr4q42 full length ENSRNOG00000015411 25383 P38483
Rn.100021_at 1372094_at Rn.16879.1 BG380556 Rn.16879 Rn.100021 1 - 83404780 620 727 suppressor of Ty 5 homolog (S. cerevisiae) Supt5h chr1q21 --- ENSRNOG00000032034 308472 Q63403
Rn.100022_at 1376849_at Rn.40620.1 BM384872 Rn.40620 Rn.100022 5 + 156000000 402 661 ubiquitin specific protease 48 Usp48 chr5q36 full length ENSRNOG00000013602 362636 Q76LT8
Rn.100042_at 1372048_at Rn.11964.1 BI276946 Rn.11964 Rn.100042 4 - 123000000 326 633 podocalyxin-like 2 (predicted) Podxl2_predicted chr4q34 --- ENSRNOG00000016255 297433 ---
Rn.100050_at 1383205_at Rn.2966.1 BI288833 Rn.2966 Rn.100050 1 - 53084141 712 271 "dapper homolog 2, antagonist of beta-catenin (xenopus) (predicted)" Dact2_predicted chr1q12 --- --- 308212 ---
Rn.10006_at 1368627_at Rn.10006.1 NM_031546 Rn.10006 Rn.10006 X - 13037202 189 563 regucalcin Rgn chrXq11-q12 full length ENSRNOG00000007949 25106 Q03336
Rn.100064_at 1388858_at Rn.8205.1 BI283843 Rn.8205 Rn.100064 10 + 47096103 458 297 mitogen activated protein kinase kinase 3 Map2k3 chr10q22 --- ENSRNOG00000006612 303200 Q498S1
Rn.10008_at 1368697_at Rn.10008.1 NM_017098 Rn.10008 Rn.10008 10 - 28694773 230 747 "fatty acid binding protein 6, ileal (gastrotropin)" Fabp6 chr10q21 full length ENSRNOG00000003902 25440 P80020
Rn.10009_at 1398267_at Rn.10009.1 NM_053537 Rn.10009 Rn.10009 9 + 9934249 587 95 "solute carrier family 22 (organic anion transporter), member 7" Slc22a7 chr9q12 full length --- 89776 Q5RLM2 /// Q63314
Rn.100101_at 1385837_at Rn.9043.1 AA956624 Rn.9043 Rn.100101 3 + 57362291 464 213 homeo box D3 Hoxd3 chr3q23 --- ENSRNOG00000001577 288152 P18867
Rn.100109_at 1371584_at Rn.17856.1 BM390843 Rn.17856 Rn.100109 3 - 146000000 563 709 "transient receptor potential cation channel, subfamily C, member 4 associated protein" Trpc4ap chr3q42 --- ENSRNOG00000019152 362247 Q3B8Q5 /// Q5M940
Rn.10011_at 1387177_at Rn.10011.1 NM_017238 Rn.10011 Rn.10011 6 + 143000000 697 419 vasoactive intestinal peptide receptor 2 Vipr2 chr6q33 full length ENSRNOG00000004317 29555 P35000
Rn.10012_at 1369374_at Rn.10012.1 NM_013114 Rn.10012 Rn.10012 13 + 79898571 146 173 "selectin, platelet" Selp chr13q22 full length --- 25651 P98106 /// Q3MID1
Rn.100120_at 1369813_at Rn.10147.1 U39320 Rn.10147 Rn.100120 3 + 171000000 261 579 "DnaJ (Hsp40) homolog, subfamily C, member 5" Dnajc5 chr3q43 full length ENSRNOG00000015202 79130 P60905

Total number of rows: 16944

Table truncated, full table size 2756 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL14976_Rn230_Rn_UG.cdf.gz 5.9 Mb (ftp)(http) CDF
GPL14976_Rn230_Rn_UG.cdf.txt.gz 2.1 Mb (ftp)(http) TXT
GPL14976_Rn230_Rn_UG.psi.gz 92.7 Kb (ftp)(http) PSI
GPL14976_Rn230_Rn_UG_desc.txt.gz 204.0 Kb (ftp)(http) TXT
GPL14976_Rn230_Rn_UG_mapping.txt.gz 1.7 Mb (ftp)(http) TXT

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