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Platform GPL15197 Query DataSets for GPL15197
Status Public on Feb 10, 2012
Title [MouseNsp] Affymetrix mouse 150K Nsp SNP mapping array
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol Same technology as used for the Human 250K Mapping Nsp array.
 
Description There arrays were developed in the laboratory of Mark Daly in collaboration with Affymetrix. See Kirby et al. 2010 Genetics 185:1081-95 (PMID 20439770).
Also see http://www.broadinstitute.org/mouse/hapmap
and
http://www.broadinstitute.org/mouse/hapmap/Flanks_And_Mappings.txt.gz
for detailed information on assessed SNPs.

Based on NCBI mouse genome build 33.
 
Submission date Feb 07, 2012
Last update date Jan 18, 2013
Contact name Alexander Gimelbrant
Organization name Dana-Farber Cancer Institute
Street address 450 Brookline Ave
City Boston
ZIP/Postal code 02115
Country USA
 
Samples (48) GSM873985, GSM873986, GSM873987, GSM873988, GSM873989, GSM873990 
Series (1)
GSE35678 Random monoallelic expression in the mouse: SNP array data

Data table header descriptions
ID
RANGE_GB RefSeq accession.version of chromosome (NCBI Build 33)
Chr Chromosome (mm33 assembly)
Pos Position of SNP
Dist Distance to gene (0 if within the gene; "---" for intergenic markers)
Gene_Name Gene ID
GB_ACC GenBank accession of gene
CLONE_ID Clone identifier
ORF ORF identifier

Data table
ID RANGE_GB Chr Pos Dist Gene_Name GB_ACC CLONE_ID ORF
mm33-X-38132122 NC_000086.1 X 38132122 --- ---
mm33-2-177855379 NC_000068.1 2 177855379 --- ---
mm33-X-32781212 NC_000086.1 X 32781212 --- ---
mm33-X-47576129 NC_000086.1 X 47576129 --- ---
mm33-6-59609561 NC_000072.1 6 59609561 --- ---
mm33-X-53030691 NC_000086.1 X 53030691 --- ---
mm33-4-120968824 NC_000070.1 4 120968824 --- ---
mm33-2-23303787 NC_000068.1 2 23303787 --- ---
mm33-6-141935402 NC_000072.1 6 141935402 --- ---
mm33-10-66999866 NC_000076.1 10 66999866 --- ---
mm33-X-80148675 NC_000086.1 X 80148675 --- ---
mm33-X-18694367 NC_000086.1 X 18694367 --- ---
mm33-X-14878727 NC_000086.1 X 14878727 --- ---
mm33-X-158229294 NC_000086.1 X 158229294 --- ---
mm33-X-35502356 NC_000086.1 X 35502356 0 AK035896 AK035896
mm33-X-148229880 NC_000086.1 X 148229880 --- ---
mm33-X-36139871 NC_000086.1 X 36139871 --- ---
mm33-9-3171845 NC_000075.1 9 3171845 --- ---
mm33-X-51828809 NC_000086.1 X 51828809 --- ---
mm33-X-29026169 NC_000086.1 X 29026169 --- ---

Total number of rows: 149116

Table truncated, full table size 7673 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15197_MouseNsp.cdf.gz 33.2 Mb (ftp)(http) CDF
GPL15197_MouseNsp_probe_sequences.txt.gz 63.2 Mb (ftp)(http) TXT

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