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GEO help: Mouse over screen elements for information. |
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Status |
Public on Feb 10, 2012 |
Title |
[MouseNsp] Affymetrix mouse 150K Nsp SNP mapping array |
Technology type |
spotted oligonucleotide |
Distribution |
custom-commercial |
Organism |
Mus musculus |
Manufacturer |
Affymetrix |
Manufacture protocol |
Same technology as used for the Human 250K Mapping Nsp array.
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Description |
There arrays were developed in the laboratory of Mark Daly in collaboration with Affymetrix. See Kirby et al. 2010 Genetics 185:1081-95 (PMID 20439770). Also see http://www.broadinstitute.org/mouse/hapmap and http://www.broadinstitute.org/mouse/hapmap/Flanks_And_Mappings.txt.gz for detailed information on assessed SNPs.
Based on NCBI mouse genome build 33.
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Submission date |
Feb 07, 2012 |
Last update date |
Jan 18, 2013 |
Contact name |
Alexander Gimelbrant |
Organization name |
Dana-Farber Cancer Institute
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Street address |
450 Brookline Ave
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City |
Boston |
ZIP/Postal code |
02115 |
Country |
USA |
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Samples (48)
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GSM873985, GSM873986, GSM873987, GSM873988, GSM873989, GSM873990
GSM873991, GSM873992, GSM873993, GSM873994, GSM873995, GSM873996, GSM873997, GSM873998, GSM873999, GSM874000, GSM874001, GSM874002, GSM874003, GSM874004, GSM874005, GSM874006, GSM874007, GSM874008, GSM874009, GSM874010, GSM874011, GSM874012, GSM874013, GSM874014, GSM874015, GSM874016, GSM874017, GSM874018, GSM874019, GSM874020, GSM874021, GSM874022, GSM874023, GSM874024, GSM874025, GSM874026, GSM874027, GSM874028, GSM874029, GSM874030, GSM874031, GSM874032
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Series (1) |
GSE35678 |
Random monoallelic expression in the mouse: SNP array data |
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Data table header descriptions |
ID |
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RANGE_GB |
RefSeq accession.version of chromosome (NCBI Build 33) |
Chr |
Chromosome (mm33 assembly) |
Pos |
Position of SNP |
Dist |
Distance to gene (0 if within the gene; "---" for intergenic markers) |
Gene_Name |
Gene ID |
GB_ACC |
GenBank accession of gene |
CLONE_ID |
Clone identifier |
ORF |
ORF identifier |
Total number of rows: 149116
Table truncated, full table size 7673 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GPL15197_MouseNsp.cdf.gz |
33.2 Mb |
(ftp)(http) |
CDF |
GPL15197_MouseNsp_probe_sequences.txt.gz |
63.2 Mb |
(ftp)(http) |
TXT |
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