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Platform GPL15336 Query DataSets for GPL15336
Status Public on Sep 30, 2012
Title Agilent-018257 NematodeNet_Ascaris suum_42K_v1.0
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Ascaris suum
Manufacturer Agilent
Manufacture protocol Agilent 4x44K format chips were used for this genome-wide expression array. The Agilent gene expression custom array for A. suum was designed in Agilent eArray:
4x44K
Design ID 018257
The final array contains 42,212 customized probes, each derived from a single predicted A. suum gene. We also included 1,591 spike control spots of ten probes, each targeting a different Arabidopsis thaliana gene that did not have homology to known non-plant sequences currently in public databases (SpotReport@-10 Array Validation System, Stratagene).
 
 
Web link http://nematode.net/NN3_frontpage.cgi?navbar_selection=funcexp&subnav_selection=microarray
Contributor(s) Mitreva M, Gao X
Submission date Mar 08, 2012
Last update date Sep 30, 2012
Contact name Makedonka Mitreva
E-mail(s) mmitreva@genome.wustl.edu
URL http://nematode.net
Organization name The Genome Institute
Street address 4444 Forest Park Ave
City St. Louis
State/province Missouri
ZIP/Postal code 63108
Country USA
 
Samples (10) GSM896802, GSM897994, GSM898003, GSM898004, GSM898005, GSM898006 
Series (1)
GSE36690 Gene expression analysis distinguishes tissue specific and gender related functions among adult Ascaris suum tissues.

Data table header descriptions
ID
ORGANISM Species name
KEGG Similarity based KEGG annotation
IPR Interproscan based IPR annotation
Best CE hit Similarity based C.elegans gene ortholog
RNAI RNAi phenotype inferred from C.elegans ortholog
NR hit Similarity based annotation using GenBank's NR db
Cellular component Interproscan based GO annotation (cellular component)
Molecular function Interproscan based GO annotation (molecular function)
Biological process Interproscan based GO annotation (biological process)
SEQUENCE Oligonucleotide sequence representing gene on array
PT_ACC

Data table
ID ORGANISM KEGG IPR Best CE hit RNAI NR hit Cellular component Molecular function Biological process SEQUENCE PT_ACC
AS00042 Ascaris suum - - ZC8.4b CE38922 WBGene00022500 locus:lfi-1 status:Partially_confirmed TR:Q45EJ8 protein_id:AAZ32792.1 - emb|CAJ85648.1| 227 kDa spindle-and centromere-associated protein [Ascaris suum] - - - ATCGAAACTGCAAATTAGCGAAAGTAAGAATGCTGACCTGAGAGATGACGCTGACCGTCT CAJ85648.1
AS00065 Ascaris suum - IPR002035(von Willebrand factor, type A) - - emb|CAJ43277.1| hypothetical protein [Ascaris suum] - - - TAACAATCCATGTGCAGTTGCATCACGCATCATTGAGAGTGGCAGTATCCTGCTTACAGT CAJ43277.1
AS00119 Ascaris suum - - M03F4.7a CE12368 WBGene00019760 locus:calu-1 calcium binding protein status:Confirmed TR:Q23017 protein_id:AAB04578.1 - ref|XP_001676650.1| Hypothetical protein CBG14576 [Caenorhabditis briggsae AF16] >emb|CAP33056.1| C. briggsae CBR-CALU-1 protein [Caenorhabditis briggsae] - - - CTTTTTCCCCATTCTCTCTCAAAGTTATGTTCTCGTTGCATAACTTATAAAACGATGCAT
AS00127 Ascaris suum - IPR014347(Tautomerase) IPR001398(Macrophage migration inhibitory factor) C52E4.2 CE08944 WBGene00003235 locus:mif-2 macrophage migration inhibitory factor like protein status:Confirmed SW:Q18785 protein_id:CAB01412.1 WT gb|ABM30179.1| macrophage migration inhibitory factor [Anisakis simplex] - - - AAGTGTCTTATAGAGTTCGTGAACCTCGAGCCACAGAATGTTTCTAATTCGGGCACTACG
AS00130 Ascaris suum - - - - - - - - CCAATACACTCCAATTTAGATTGGGGTGGTTTTTCGGTGAAATTTCTCAATAAAGCTTTT
AS00165 Ascaris suum K01239 purine nucleosidase IPR001910(Inosine/uridine-preferring nucleoside hydrolase) Y43F8C.13 CE21911 WBGene00012834 Inosine-uridine preferring nucleoside hydrolase status:Confirmed TR:Q9XWN7 protein_id:CAA21614.1 WT ref|NP_507813.1| Y43F8C.13 [Caenorhabditis elegans] >emb|CAA21614.1| C. elegans protein Y43F8C.13, confirmed by transcript evidence [Caenorhabditis elegans] - - - GGTGTTGGGAATATTGATGCGAAGCATACAGCCGAATTCAACTTTGGTGCTGATCCTGAA
AS00167 Ascaris suum K01185 lysozyme IPR013781(Glycoside hydrolase, catalytic core) IPR002053(Glycoside hydrolase, family 25) F58B3.3 CE06005 WBGene00003095 locus:lys-6 status:Confirmed TR:Q20968 protein_id:CAA97801.1 WT ref|NP_502194.1| LYSozyme family member (lys-6) [Caenorhabditis elegans] >emb|CAA97801.1| C. elegans protein F58B3.3, confirmed by transcript evidence [Caenorhabditis elegans] catalytic activity (GO:0003824) lysozyme activity (GO:0003796) cation binding (GO:0043169) carbohydrate metabolic process (GO:0005975) cell wall catabolic process (GO:0016998) peptidoglycan catabolic process (GO:0009253) GATTCGCATGGCCTAGCAATAAAGCAAACAATAGACAGTTCATTAGAAATATGGTCAATA
AS00174 Ascaris suum K01529 NO DESCRIPTION IPR013032(EGF-like region) - - - - - - AATGATGAATATGCAAGGGGGTATGATGCCTTCATCAGGCGGCGTACCTAACACACAAAT
AS00185 Ascaris suum - - - - - - - - AGTGCTCAACTGTGATTATTGATGTATAGCTGTGATATGTTGCAATGTTGCCTATGTATT
AS00193 Ascaris suum - - - - ref|XP_001893893.1| SNARE domain containing protein [Brugia malayi] >gb|EDP37263.1| SNARE domain containing protein [Brugia malayi] - - - TGACAGTCATAATAATTCAGACAAGGCATCAATGGAGAAAGTAAAGGAAGAGACGCCATC
AS00211 Ascaris suum K01376 NO DESCRIPTION IPR000433(Zinc finger, ZZ-type) C06G3.6 CE07982 WBGene00015552 zinc finger protein status:Confirmed TR:Q17746 protein_id:AAB03135.1 Emb ref|XP_001901606.1| Zinc finger, ZZ type family protein [Brugia malayi] >gb|EDP29165.1| Zinc finger, ZZ type family protein [Brugia malayi] zinc ion binding (GO:0008270) GAAAAATGTGAAAAGAGTGGAAAACATGCCGAACATCCAATGATTCGTTATGTTACGCCG
AS00223 Ascaris suum - - - - - - - - AACGCTTTCATGTTTCGATAGAAATTCACTACGATTACAAACACAAGCATCAATGATTCG
AS00236 Ascaris suum - IPR007110(Immunoglobulin-like) K10C3.3 CE30349 WBGene00006978 locus:zig-1 IG superfamily repeats (I-type) status:Confirmed TR:O02280 protein_id:CAB05773.2 WT ref|XP_001897384.1| Immunoglobulin I-set domain containing protein [Brugia malayi] >gb|EDP33780.1| Immunoglobulin I-set domain containing protein [Brugia malayi] - - - CGAAAAGTTATGAATTGGATGAGGAGGACCATTTCCACGTGAAGGGACAAACAATGCGAG
AS00258 Ascaris suum - IPR001503(Glycosyl transferase, family 10) - - ref|XP_001902079.1| Fucosyl transferase family protein [Brugia malayi] >gb|EDP29638.1| Fucosyl transferase family protein [Brugia malayi] membrane (GO:0016020) fucosyltransferase activity (GO:0008417) protein amino acid glycosylation (GO:0006486) CTCAATCGAGATCTCGGCACCAACTTTTCGCATTTTTCTTGCAAGAGTCACCGTACCATA
AS00276 Ascaris suum - IPR001400(Somatotropin hormone) - - - extracellular region (GO:0005576) hormone activity (GO:0005179) ACGTTCTTCAACTGGTGTTCGACTGTAGAGGATCGACTGTTGGTAAACGCTAACTGCAAA
AS00345 Ascaris suum K04460 protein phosphatase 5 IPR011990(Tetratricopeptide-like helical) IPR013026(Tetratricopeptide region) IPR001440(Tetratricopeptide TPR-1) IPR013105(Tetratricopeptide TPR2) T12D8.8 CE16405 WBGene00011735 TPR Domain (2 domains) status:Confirmed TR:O45786 protein_id:CAB05818.1 WT ref|XP_001900682.1| TPR Domain containing protein [Brugia malayi] >gb|EDP30437.1| TPR Domain containing protein [Brugia malayi] binding (GO:0005488) ATGTGTTGCTGAAGTTGAATAAGCCAAATGGAGCGATCCGGGATTGCAATAAGGCGATCT
AS00350 Ascaris suum - IPR011001(Saposin-like) IPR008139(Saposin B) IPR008138(Saposin-like type B, 2) F08F1.6 CE09253 WBGene00004998 locus:spp-13 status:Confirmed TR:O17387 protein_id:AAB71306.1 WT ref|XP_001677544.1| Hypothetical protein CBG22763 [Caenorhabditis briggsae AF16] >emb|CAP39280.1| C. briggsae CBR-SPP-13 protein [Caenorhabditis briggsae] - - - CACCCACCTCAGTGTCCTTCAACTCATCAATCATTGTTTTCTGTTCAGTAAATTTTAAGA
AS00357 Ascaris suum - - - - ref|XP_001899565.1| hypothetical protein [Brugia malayi] >gb|EDP32373.1| conserved hypothetical protein [Brugia malayi] - - - GTCGCAAACAATGGGAATTGAAACTTGCTAAGAAAGCCGAACGAAAACGACGGAAAAAAG
AS00410 Ascaris suum - IPR008962(PapD-like) - - - - - - GGCAATATTCGACCGATAACAGGTTTACAGCAGAAAATATGCACATTGTTCGTTTGAAAT
AS00453 Ascaris suum - - B0041.3 CE07668 WBGene00015008 status:Partially_confirmed TR:O02055 protein_id:AAC24252.1 fat_content_reduced ref|XP_001894322.1| LysM domain containing protein [Brugia malayi] >gb|EDP36834.1| LysM domain containing protein [Brugia malayi] - - - AGGAAAATGATGAGCACACATTTCTTTGTGGCTATCAACGTGCACGAGGCTACGGTAGTA

Total number of rows: 42212

Table truncated, full table size 12656 Kbytes.




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