GEO help: Mouse over screen elements for information.
Status
Public on Feb 28, 2005
Title
Custom Yeast Genomic 70-mer Oligonucleotide Microarray
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Saccharomyces cerevisiae
Description
The custom microarrays consisted of Operon’s Yeast Genomic 70-mer Oligonucleotide Set (Qiagen, Valencia, CA, v. 1.1) spotted in duplicate at a concentration of 20 mM in 150 mM sodium phosphate (pH 8.5), Arabidopsis oligonucleotide spike controls (Stratagene SpotReport, La Jolla, CA) spotted in quadruplicate, and 10 human and 10 yeast oligonucleotide negative controls spotted in duplicate. The oligonucleotides were printed on Codelink slides (Amersham, Piscataway, NJ) by Microarrays, Inc. (Nashville, TN). Post-print processing was conducted according to the manufacturer’s recommendations.
Contributor(s)
Lai L , Kosorukoff AL , Burke PV , Kwast KE Submission date
Oct 25, 2004
Last update date
Nov 30, 2005
Contact name
Kurt E Kwast
E-mail(s)
kwast@uiuc.edu Phone
217-244-3122
Organization name
University of Illinois at Urbana-Champaign
Department
Molecular & Integrative Physiology
Lab
Kwast Lab
Street address
407 S. Goodwin Ave.
City
Urbana
State/province
IL
ZIP/Postal code
61801
Country
USA
Samples (227)
GSM33504 , GSM33505 , GSM33506 , GSM33507 , GSM33508 , GSM33509
GSM33510 ,
GSM33511 ,
GSM33512 ,
GSM33514 ,
GSM33516 ,
GSM33518 ,
GSM33520 ,
GSM33522 ,
GSM33523 ,
GSM41252 ,
GSM41253 ,
GSM41254 ,
GSM41255 ,
GSM41256 ,
GSM41257 ,
GSM41258 ,
GSM41259 ,
GSM41260 ,
GSM41261 ,
GSM41262 ,
GSM41263 ,
GSM41264 ,
GSM41265 ,
GSM41266 ,
GSM41267 ,
GSM41268 ,
GSM41269 ,
GSM41270 ,
GSM41271 ,
GSM41272 ,
GSM41273 ,
GSM41274 ,
GSM41275 ,
GSM41276 ,
GSM41277 ,
GSM41278 ,
GSM41279 ,
GSM41280 ,
GSM41281 ,
GSM41282 ,
GSM41283 ,
GSM41284 ,
GSM41285 ,
GSM41286 ,
GSM41287 ,
GSM41288 ,
GSM41289 ,
GSM41290 ,
GSM41291 ,
GSM41292 ,
GSM41293 ,
GSM41294 ,
GSM41295 ,
GSM41296 ,
GSM41297 ,
GSM41298 ,
GSM41299 ,
GSM41300 ,
GSM41301 ,
GSM41302 ,
GSM41303 ,
GSM41304 ,
GSM41305 ,
GSM41306 ,
GSM41307 ,
GSM41308 ,
GSM41309 ,
GSM41310 ,
GSM41311 ,
GSM41312 ,
GSM41313 ,
GSM41314 ,
GSM41315 ,
GSM41316 ,
GSM41317 ,
GSM41318 ,
GSM41319 ,
GSM41320 ,
GSM41321 ,
GSM41322 ,
GSM41323 ,
GSM41339 ,
GSM41340 ,
GSM41341 ,
GSM41785 ,
GSM41786 ,
GSM41787 ,
GSM41788 ,
GSM41789 ,
GSM41790 ,
GSM41791 ,
GSM41792 ,
GSM41793 ,
GSM41794 ,
GSM41795 ,
GSM41796 ,
GSM41797 ,
GSM41798 ,
GSM41799 ,
GSM41800 ,
GSM41801 ,
GSM41802 ,
GSM41803 ,
GSM41804 ,
GSM41805 ,
GSM41806 ,
GSM41807 ,
GSM41808 ,
GSM41809 ,
GSM41810 ,
GSM41811 ,
GSM41812 ,
GSM41813 ,
GSM41814 ,
GSM41815 ,
GSM41816 ,
GSM41817 ,
GSM41818 ,
GSM41819 ,
GSM41820 ,
GSM41821 ,
GSM41822 ,
GSM41823 ,
GSM41824 ,
GSM41825 ,
GSM41826 ,
GSM41827 ,
GSM41828 ,
GSM41829 ,
GSM41830 ,
GSM41831 ,
GSM41832 ,
GSM41833 ,
GSM41834 ,
GSM41835 ,
GSM41836 ,
GSM41837 ,
GSM41838 ,
GSM41839 ,
GSM41840 ,
GSM41841 ,
GSM41842 ,
GSM41843 ,
GSM41844 ,
GSM41845 ,
GSM41846 ,
GSM41847 ,
GSM41848 ,
GSM41849 ,
GSM41850 ,
GSM41851 ,
GSM41852 ,
GSM41853 ,
GSM41854 ,
GSM41855 ,
GSM41856 ,
GSM41857 ,
GSM41858 ,
GSM85540 ,
GSM85541 ,
GSM85542 ,
GSM85543 ,
GSM85544 ,
GSM85545 ,
GSM85546 ,
GSM85547 ,
GSM85548 ,
GSM85549 ,
GSM85550 ,
GSM85551 ,
GSM85552 ,
GSM85553 ,
GSM85554 ,
GSM85555 ,
GSM85556 ,
GSM85557 ,
GSM85558 ,
GSM85559 ,
GSM85560 ,
GSM85561 ,
GSM85562 ,
GSM85563 ,
GSM85564 ,
GSM85565 ,
GSM85566 ,
GSM85567 ,
GSM85568 ,
GSM85569 ,
GSM85570 ,
GSM85571 ,
GSM85572 ,
GSM85573 ,
GSM85574 ,
GSM85575 ,
GSM85576 ,
GSM85577 ,
GSM85578 ,
GSM85579 ,
GSM85580 ,
GSM85581 ,
GSM85582 ,
GSM85583 ,
GSM85584 ,
GSM85585 ,
GSM85586 ,
GSM85587 ,
GSM85588 ,
GSM85589 ,
GSM85590 ,
GSM85591 ,
GSM85592 ,
GSM85593 ,
GSM85594 ,
GSM85595 ,
GSM85596 ,
GSM85597 ,
GSM85598 ,
GSM85599 ,
GSM85600 ,
GSM85601 ,
GSM85602 Series (5)
GSE1879 aerobic_to_anaerobic_shift
GSE2246 JM43_Galactose_Air_N2_Air_Shift
GSE2267 JM43_Glucose_Air_N2_Air_Shift
GSE3705 JM43 cells grown aerobically in galactose and treated with Antimycin A
GSE3706 JM43_Galactose_N2_AntimycinA
Data table header descriptions ID ORF SGD locus
Oligo_ID Operon's 70-mer oligonucleotide ID
SGD_ID SGD ID
Gene Gene name
Comment Comment on Operon's 70-mer oligonucleotides
SEQUENCE Operon's 70-mer oligonucleotide sequence
Data table ID ORF Oligo_ID SGD_ID Gene Comment SEQUENCE Q0045
Q0045 Q0045_01
S0007260 COX1
.
ATGTATTATCAATGGGTGCTATTTTCTCTTTATTTGCAGGATACTATTATTGAAGTCCTCAAATTTTAGG
Q0050
Q0050 Q0050_01
S0007261 AI1
.
GTAACTGATCCTTTTGAATATATCGATTCAATTAAATATATATTACCTACAGCTAAAGCTAATTTTAATA
Q0055
Q0055 Q0055_01
S0007262 AI2
.
GAAAGTTATTTTAAAATTCGGTAAAGTATTAGTTGATCCTCATTCAAAAGTTAGTTTTAGTATTGATGAT
Q0060
Q0060 Q0060_01
S0007263 AI3
.
TAAATGGTAAAAATCGTTCTAGTAGAGCAATGCCTTATTATTGTTTAGAATTAAGACAAAATTATCAAAA
Q0065
Q0065 Q0065_01
S0007264 AI4
.
TGTTGGATTTTTTGATGCTGATGGTACAATTAATTATTCATTTAAAAATAATCATCCTCAATTAACAATT
Q0070
Q0070 Q0070_01
S0007265 AI5_ALPHA
.
ATATGTGATGGTTCATTTGTAAAAGGTGGAGGTTTATATTTAAATTTACAATCTTTTCTAACTAAAGAAT
Q0075
Q0075 Q0075_01
S0007266 AI5_BETA
.
GTATTTTAAAAAGAGATTATAAATCTGGTGCTACAGCTTATATTTATAAAGCTCAATCATCAAAAGCTAT
Q0080
Q0080 Q0080_01
S0007267 AAP1
.
GGTTTCTTATTAATGATTCTATTATTAATTTTATTCTCACAATTCTTTTTACCTATGATCTTAAGATTATATGTATCTAG
Q0085
Q0085 Q0085_01
S0007268 ATP6
.
AGGTTCTAATATCTTAGCTGGTCATTTATTAATGGTTATTTTAGCTGGTTTACTATTTAATTTTATGTTA
Q0105
Q0105 Q0105_01
S0007270 COB
.
TCACCTAATACTTTAGGTCATCCTGATAACTATATTCCTGGTAATCCTTTAGTAACACCAGCATCTATTG
Q0110
Q0110 Q0110_01
S0007271 BI2
.
TTAGCTTTAGCTATTTGAATTATAGATGATGGATGTAAATTAGGTAAAGGTTTAAAATTCACAACTAATT
Q0115
Q0115 Q0115_01
S0007272 BI3
.
GCTGAAAGTTGTTTTAGTATTTATAAACCTATAAATAAAAAAATAAAACTTGCTAGTTTTGAAGTATCTC
Q0120
Q0120 Q0120_01
S0007273 BI4
.
AAATTAGACCTCAATTAACTATTAGCGTTACAAATAAATATTTACATGATGTTGAATACTATAGAGAAGT
Q0130
Q0130 Q0130_01
S0007274 OLI1
.
TCAAGAAACCCATCAATTAAAGACCTAGTATTCCCTATGGCTATTTTAGGTTTCGCCTTATCAGAAGCTA
Q0140
Q0140 Q0140_01
S0007275 VAR1
.
GTTGGTTGATCTATTAAATTTAAAGGTAGATTAAGTAATAATAATGGTAGAACTAGTACACTTAATTTAT
Q0160
Q0160 Q0160_01
S0007279 SCEI
.
TATCACCTCCTCATAAAAAAGAAAGAGTTAATCATTTAGGTAATTTAGTAATTACCTGAGGAGCTCAAAC
Q0250
Q0250 Q0250_01
S0007281 COX2
.
AACAGCTGCTGATGTTATTCATGATTTTGCTATTCCAAGTTTAGGTATTAAAGTTGATGCTACTCCTGGT
Q0255
Q0255 Q0255_01
S0007282 .
.
ACTGGTTATAGACCAGCAGCTCTTTACTTTAATTGTTCTAAACATGAAATTGCTAAATATATTAAAAATG
Q0275
Q0275 Q0275_01
S0007283 COX3
.
AGAAATTATCATTTAACAGCTGGACATCATGTTGGATATGAAACAACTATTATTTATCTACATGTTTTAG
YAL001C
YAL001C YAL001C_01
S0000001 TFC3
.
AAACATATGGAAGCAGGTAGTTACTATGGTCGTTAACGAAATAATATTTCATCCAGGGATAACATTGAGT
5617 628 Kbytes .Supplementary data files not provided
Less...
More...