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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Aug 01, 2013 |
| Title |
Agilent-021569 Physcomitrella patens 4 x 35 K array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Physcomitrium patens |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
The microarray is manufactured by Agilent Technologies. For detailed information see manufacturer's website at http://www.agilent.com/
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| Contributor(s) |
Komatsu K, Suzuki N, Kuwamura M, Nishikawa Y, Nakatani M, Ohtawa H, Takezawa D, Seki M, Tanaka M, Taji T, Hayashi T, Sakata Y |
| Submission date |
May 01, 2012 |
| Last update date |
Aug 01, 2013 |
| Contact name |
Kenji KOMATSU |
| E-mail(s) |
k4komats@nodai.ac.jp
|
| Phone |
+81-3-5477-2468
|
| Organization name |
Tokyo University of Agriculture
|
| Department |
Department of Bioproduction Technology
|
| Street address |
1-1-1 Sakuragaoka
|
| City |
Setagaya-ku |
| State/province |
Tokyo |
| ZIP/Postal code |
156-8502 |
| Country |
Japan |
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| Samples (30)
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GSM925697, GSM925698, GSM925699, GSM925700, GSM925701, GSM925702
GSM925703, GSM925704, GSM925705, GSM925706, GSM925707, GSM925708, GSM925709, GSM925710, GSM925711, GSM925712, GSM925713, GSM925714, GSM925715, GSM925716, GSM925717, GSM925718, GSM925719, GSM925720, GSM925721, GSM925722, GSM1686393, GSM1686394, GSM1686395, GSM1686396
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| Series (2) |
| GSE37694 |
Genome-wide expression profiling of PpABI1 disruptants |
| GSE68914 |
Gene expression analysis of abscisic acid responsive genes in AR7 mutant |
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| Data table header descriptions |
| ID |
|
| Row |
|
| Col |
|
| SubTypeMask |
|
| SubTypeName |
|
| Start |
|
| SEQUENCE |
probe sequence |
| ProbeUID |
|
| ControlType |
|
| SPOT_ID |
probe name |
| GeneName |
|
| Description |
|
| Data table |
| ID |
Row |
Col |
SubTypeMask |
SubTypeName |
Start |
SEQUENCE |
ProbeUID |
ControlType |
SPOT_ID |
GeneName |
Description |
| 1 |
1 |
1 |
0 |
|
0 |
|
0 |
1 |
GE_BrightCorner |
GE_BrightCorner |
|
| 2 |
1 |
2 |
66 |
Structural |
0 |
|
1 |
1 |
DarkCorner |
DarkCorner |
|
| 3 |
1 |
3 |
66 |
Structural |
0 |
|
1 |
1 |
DarkCorner |
DarkCorner |
|
| 4 |
1 |
4 |
66 |
Structural |
0 |
|
1 |
1 |
DarkCorner |
DarkCorner |
|
| 5 |
1 |
5 |
66 |
Structural |
0 |
|
1 |
1 |
DarkCorner |
DarkCorner |
|
| 6 |
1 |
6 |
66 |
Structural |
0 |
|
1 |
1 |
DarkCorner |
DarkCorner |
|
| 7 |
1 |
7 |
66 |
Structural |
0 |
|
1 |
1 |
DarkCorner |
DarkCorner |
|
| 8 |
1 |
8 |
66 |
Structural |
0 |
|
1 |
1 |
DarkCorner |
DarkCorner |
|
| 9 |
1 |
9 |
66 |
Structural |
0 |
|
1 |
1 |
DarkCorner |
DarkCorner |
|
| 10 |
1 |
10 |
66 |
Structural |
0 |
|
1 |
1 |
DarkCorner |
DarkCorner |
|
| 11 |
1 |
11 |
66 |
Structural |
0 |
|
1 |
1 |
DarkCorner |
DarkCorner |
|
| 12 |
1 |
12 |
0 |
|
0 |
CAGAAACAAGTACGTTCGACAATATCACCGTAGTGACGATACGTGTGATCTCATCACATT |
2 |
0 |
PPATENS11003393 |
e_gw1.3.279.1 |
Unknown |
| 13 |
1 |
13 |
0 |
|
0 |
CTTTCACACACATGGAGAGGCCACTTCAGCAAATATAGATACAATAGTCAATAGTTCATC |
4 |
0 |
PPATENS11026088 |
KOG3105 |
"KOG3105; DNA-binding centromere protein B (CENP-B); Cell cycle control, cell division, chromosome partitioning ; METABOLISM" |
| 14 |
1 |
14 |
0 |
|
0 |
TTGAAGAATTGAAGATTGGTTCTGATGGAGCAACGACCAATTCCAGTGCAAATACTGGGA |
5 |
0 |
PPATENS11024129 |
fgenesh1_pg.scaffold_200000043 |
Unknown |
| 17 |
1 |
17 |
0 |
|
0 |
GGCCATGGGAACTGGAGCGTTGTGTGCGAGCCATGCATGAGCTGCAGCGGAACACGAAGA |
8 |
0 |
PPATENS11016743 |
KOG0654 |
"KOG0654; G2/Mitotic-specific cyclin A; Cell cycle control, cell division, chromosome partitioning ; METABOLISM" |
| 18 |
1 |
18 |
0 |
|
0 |
TAAGTAGAAACGAAGCAATGAGTCTCGCGTCCATTCGTGAGCTCAGTATACCTCAGCTTA |
10 |
0 |
PPATENS11021829 |
KOG4674 |
KOG4674; Uncharacterized conserved coiled-coil protein; Function unknown ; POORLY CHARACTERIZED |
| 19 |
1 |
19 |
0 |
|
0 |
GTGACGGTAGGCTTTCTACTTCTCGTTTGCTAGCAACTAAGAATCCCAAGGTAGTTGAGA |
12 |
0 |
PPATENS11000392 |
fgenesh1_pg.scaffold_1000040 |
Unknown |
| 20 |
1 |
20 |
0 |
|
0 |
CTCTATAAGAGCAGGAGCTGGTATCCCGGGTTGCAGACAAAGGTTGGCAGACAGCAGAGT |
14 |
0 |
PPATENS11031720 |
fgenesh1_pg.scaffold_350000010 |
Unknown |
| 21 |
1 |
21 |
0 |
|
0 |
GGATCCTAGTATTATAGTACCTATGCTTGCTTACGATGGTCGACCAAAAGGCATATTTGC |
16 |
0 |
PPATENS11001210 |
fgenesh1_pg.scaffold_130000004 |
Unknown |
| 23 |
1 |
23 |
0 |
|
0 |
TGGATGACGTAGATCGTGTTGAAGACCTCCCATCTTACGTTGCCCTTGTGAATTCCACCT |
19 |
0 |
PPATENS11001914 |
KOG2998 |
KOG2998; Uncharacterized conserved protein; Function unknown ; POORLY CHARACTERIZED |
Total number of rows: 35359
Table truncated, full table size 5901 Kbytes.
| Supplementary data files not provided |
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