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Platform GPL15612 Query DataSets for GPL15612
Status Public on May 06, 2013
Title NimbleGen Tribolium castaneum Whole-genome Tiling Array Set (1 of 3)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Tribolium castaneum
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description This is a Red flour beetle (Tribolium castaneum) whole-genome tiling array set (1 of 3) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen.
 
Contributor(s) Colbourne J, Choi J
Submission date May 25, 2012
Last update date May 06, 2013
Contact name Jacqueline Lopez
E-mail(s) jacqueline.ann.lopez@gmail.com
Phone 574-631-1902
Organization name University of Notre Dame
Department Biology
Lab Pfrender Laboratory
Street address 019 Galvin Life Science Center
City Notre Dame
State/province Indiana
ZIP/Postal code 46556
Country USA
 
Samples (3) GSM937321, GSM937322, GSM937323
Series (1)
GSE38245 Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum

Data table header descriptions
ID
GENOME_ACC GenBank accession
PROBE_DESIGN_ID
SEQUENCE
RANGE_START
LENGTH
RANGE_END

Data table
ID GENOME_ACC PROBE_DESIGN_ID SEQUENCE RANGE_START LENGTH RANGE_END
CM000276FS000001017 CM000276 540721_928_134 TGTCCGCGCCATTTAAAATTTTGTTACCGATTCAGTGTGATTTTTTAGGTTGGCA 1017 55 1071
CM000276FS000001032 CM000276 540701_412_3526 AAATTTTGTTACCGATTCAGTGTGATTTTTTAGGTTGGCATTACTTTTTAA 1032 51 1082
CM000276FS000001645 CM000276 540711_865_1443 TTTAAACACGTAACCGCGCCATTTTTTTTAGTTCGTAATGGTTGACATCACG 1645 52 1696
CM000276FS000001995 CM000276 540701_924_2998 ATCCTGCAGGCCCGCCGCAACCAGGCCGTAATAAATCCCTAATAAAAAAA 1995 50 2044
CM000276FS000002668 CM000276 540711_926_2156 ACCCGGTTTAAAAAAGACTGAATTAAAAATTAATTCACCAATCAATTTGA 2668 50 2717
CM000276FS000005202 CM000276 540701_606_3754 GAATTGAATTAAAACGAAAAGAAATTATTCTTTAATCGTAATAAAATTTA 5202 50 5251
CM000276FS000006684 CM000276 540711_51_1959 CAAAAATTTCACTGTCCGCCACTAAATTTAATCCACTTTAAAAATAGAAAA 6684 51 6734
CM000276FS000006846 CM000276 540711_764_2328 TAGAACGCCCCCGTATTGAAAAATCAATAATCGGACTACATTTGTGACGTTTGTGA 6846 56 6901
CM000276FS000007073 CM000276 540701_986_3518 CCTGCAAGCCACTTGTACACCACAAAGTTATGATTTCAATCATTTTTAAAACTGCCC 7073 57 7129
CM000276FS000007428 CM000276 540701_426_3024 TAAACCACGTAATAAATATGCTTATTCCTGACTCAACATTTTAACGACTCGTTT 7428 54 7481
CM000276FS000007542 CM000276 540721_853_625 TTTCACTACTTGATTAATTATTCAGCCGCTCCGATCGAATTATCCCTCAGGAACAAAT 7542 58 7599
CM000276FS000007572 CM000276 540721_255_145 CCGATCGAATTATCCCTCAGGAACAAATTCTTCAAATTGAGCAAAATCTTTCTCTTC 7572 57 7628
CM000276FS000008311 CM000276 540711_172_1758 TTTTATTTTATCATTTACGAAAAAAACTCACATATTTTGCAAAATTTTGTAA 8311 52 8362
CM000276FS000008523 CM000276 540711_59_2505 TACTTTTGCTTTTCGAGCGTTTTAGCAGATTTCCACTTATTTTGCATAATTTTGCTA 8523 57 8579
CM000276FS000008583 CM000276 540701_213_3681 ATTGAAGGTCAGACATGACGTTATTTTGGCCTTTTTGGTTAGATTTGCTTTGTT 8583 54 8636
CM000276FS000008695 CM000276 540701_671_3127 CGTTAGTTCGGTCCGACTTATTTTATTGTAGTACTTTCAAATTTTAGGTGA 8695 51 8745
CM000276FS000008764 CM000276 540721_1008_1400 GTCTTTATGTAAGGAGTGATTAAAATTCTTATCGGCAATTATGATTCTTTGTTGGT 8764 56 8819
CM000276FS000008849 CM000276 540721_951_1213 GTATTGGTGGTCGGGGGCTTCCAGATGTTGAAAGTTGTGGGTATTGGAGA 8849 50 8898
CM000276FS000008889 CM000276 540721_940_1166 GTATTGGAGAACAAAGGGCGTCAGCTGCAGTACCGCAGAAGTTCGTGAAA 8889 50 8938
CM000276FS000008954 CM000276 540721_303_315 CGCTTATTTAATGAATATATTTTGCATAGGTACAATTATGTAAAATCGTTACATTATCA 8954 59 9012

Total number of rows: 2123031

Table truncated, full table size 247859 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15612_101013_Tcas_CGH_ZL_1_of_3_HX1.ndf.gz 122.0 Mb (ftp)(http) NDF
GPL15612_101013_Tcas_CGH_ZL_1_of_3_HX1.pos.gz 16.9 Mb (ftp)(http) POS
GPL15612_101013_Tcas_CGH_ZL_1_of_3_HX1.txt.gz 63.5 Mb (ftp)(http) TXT
GPL15612_101013_Tcas_CGH_ZL_1_of_3_HX1_probe_locations.gff.gz 21.9 Mb (ftp)(http) GFF
GPL15612_CM000276-285_gbk.txt.gz 60.8 Mb (ftp)(http) TXT
GPL15612_DS497665-497969_gbk.txt.gz 8.0 Mb (ftp)(http) TXT

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