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Status
Public on Jun 01, 2012
Title
NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [100718_DM_5_Catalog_tiling_HX1]
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Drosophila melanogaster Manufacturer
NimbleGen
Manufacture protocol
See manufacturer's web site www.nimblegen.com
Catalog number
05542308001
Description
D. mel ChIP 2.1M WG-T Arr Del
Submission date
Jun 01, 2012
Last update date
Jun 20, 2012
Organization
NimbleGen Systems, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov Phone
608-218-7600
URL
http://www.nimblegen.com/ Street address
504 S. Rosa Road
City
Madison
State/province
WI
ZIP/Postal code
53719
Country
USA
Samples (94)
GSM981596 , GSM1138569 , GSM1138570 , GSM1138571 , GSM1138572 , GSM1138573
GSM1138574 ,
GSM1138575 ,
GSM1138576 ,
GSM1138577 ,
GSM1147097 ,
GSM1147098 ,
GSM1147099 ,
GSM1147100 ,
GSM1147101 ,
GSM1147102 ,
GSM1147103 ,
GSM1147104 ,
GSM1147105 ,
GSM1147106 ,
GSM1147107 ,
GSM1147108 ,
GSM1147555 ,
GSM1147556 ,
GSM1147557 ,
GSM1147558 ,
GSM1147559 ,
GSM1147560 ,
GSM1147561 ,
GSM1147562 ,
GSM1147563 ,
GSM1147564 ,
GSM1147565 ,
GSM1147566 ,
GSM1147567 ,
GSM1147568 ,
GSM1147569 ,
GSM1228824 ,
GSM1228825 ,
GSM1228826 ,
GSM1260471 ,
GSM1260472 ,
GSM1260473 ,
GSM1260474 ,
GSM1260475 ,
GSM1260476 ,
GSM1260477 ,
GSM1260478 ,
GSM1261858 ,
GSM1261859 ,
GSM1261860 ,
GSM1261861 ,
GSM1261862 ,
GSM1261863 ,
GSM1261864 ,
GSM1261865 ,
GSM1261866 ,
GSM1261867 ,
GSM1261868 ,
GSM1261869 ,
GSM1261870 ,
GSM1261871 ,
GSM1261872 ,
GSM1261873 ,
GSM1261874 ,
GSM1261875 ,
GSM1261876 ,
GSM1261877 ,
GSM1261878 ,
GSM1261879 ,
GSM1261880 ,
GSM1261881 ,
GSM1523421 ,
GSM1523422 ,
GSM1523423 ,
GSM1523424 ,
GSM1617410 ,
GSM1617411 ,
GSM1617412 ,
GSM1617413 ,
GSM1617414 ,
GSM1617415 ,
GSM1617416 ,
GSM1617417 ,
GSM1617439 ,
GSM1617440 ,
GSM1617441 ,
GSM1617442 ,
GSM1617443 ,
GSM1617444 ,
GSM1617445 ,
GSM1617446 ,
GSM2175016 ,
GSM2175017 Series (15)
GSE39935 Genome-wide Polycomb localization in Drosophila whole testes and purified germline precursor cells.
GSE46803 Profiling of RNA Pol II occupancy in Drosophila neural stem cell populations using TaDa (Targeted DamID)
GSE47228 Binding in wild type, D and SoxN mutant embryos: SoxN vs D.
GSE47337 Binding in wild type embryos: SoxN.
GSE47338 Analysis of SoxNeuro gene expression changes, genome-wide binding, and comparison of SoxNeuro and Dichaete binding profiles in wild type and mutant embryos
GSE50768 Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol) [NimbleGen Array data]
GSE50769 Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol)
GSE52165 Nucleosomal chromatin in the mature sperm of Drosophila melanogaster.
GSE52247 DamID from Drosophila CNS with Dam fused FruMA, FruMB, FruMC.
GSE62234 CTCF binding profiles in Drosophila melanogaster 3rd instar larva T1 and T3 leg discs
GSE66219 Genome-wide profiling of H3K56ac in Drosophila melanogaster BG3 cell lines
GSE66220 Genome-wide profiling of H3K56ac in Drosophila melanogaster Kc cell lines
GSE66225 Genome-wide profiling of Su(H) in Drosophila melanogaster BG3 cell lines
GSE66227 Chromatin signatures at Notch regulated enhancers reveal large-scale changes in H3K56ac upon activation
GSE81745 Profiling of Pol II occupancy in quiescent neural stem cells in Drosophila melanogaster
Data table header descriptions ID PROBE_ID from .pos file
SEQ_ID CHROMOSOME Chromosome
RANGE_GB CHROMOSOME accession.version
SPOT_ID RANGE_START POSITION. Start position of oligo realtive to the RANGE_GB accession.
LENGTH Length of oligo
SEQUENCE Sequence of oligo probe
Data table ID SEQ_ID CHROMOSOME RANGE_GB SPOT_ID RANGE_START LENGTH SEQUENCE CHR03RFS027886825
chr3R:1-27905053
chr3R
AE014297.2 27886825
54
TCATCGCCAAATTTACACTATAGTATTTTTTAAAAGGTGTTTTTTATATGCGAA
CHRXHETFS000076397
chrXHET:1-204112
chrXHET
chrXHET
76397
51
CATCCAAGCGTTGCTTTAGGTAATTGCGTAGCGAAAGTTCAACGGAAGAAA
CHRXFS008874585
chrX:1-22422827
chrX
AE014298.4 8874585
55
CGTAATAACTTCGCTAAAAATTGTCATAAAGATTAAAGAGTAACTGTTTTGAGCA
CHR03RFS019714213
chr3R:1-27905053
chr3R
AE014297.2 19714213
50
AAAACATGAAGTTGGGGGAAAGAAAGCAAGGCAGTGACAAAATGCGCACA
CHRXFS012981875
chrX:1-22422827
chrX
AE014298.4 12981875
50
TATGCAAAAACTTAAATGTATAACAAAAGGAAGGGGAAAAGAAACGAAAA
CHRXFS004398848
chrX:1-22422827
chrX
AE014298.4 4398848
45
TTAAGCCATCATCAAAAAGCCGGACAAATTGCACCACGACGGCTG
CHRXFS017851856
chrX:1-22422827
chrX
AE014298.4 17851856
58
TGTGTGGGTTGTTGGTATGTTATTCGTGATTTACCTTGTTTTCAGCACATAGGGTATA
CHRXFS014079235
chrX:1-22422827
chrX
AE014298.4 14079235
45
TCCCGCTGTGGTCAAGACCTACTCCGCCCCAGCTGTGTCCACCTA
CHR03RFS027849210
chr3R:1-27905053
chr3R
AE014297.2 27849210
50
AATAATTTTTCGGGCAGCAAACCGAACAATTATTTTATTCCCTGTAAAAA
CHRXFS005970803
chrX:1-22422827
chrX
AE014298.4 5970803
45
TTCATGTGCCGGATAAAGATGTCCACGTCCTGCGAGGTGCACAGT
CHR04FS001266162
chr4:1-1351857
chr4
AE014135.3 1266162
45
AGCATTAAACAATGCTGCCCAGGCGCTCAATACAGCAGCTCTCAA
CHRXFS018397892
chrX:1-22422827
chrX
AE014298.4 18397892
45
GATTCTTCTGGCCATGGCTGCTACCGCCGGCCGCTGGATGGGAGT
CHR03RFS019476065
chr3R:1-27905053
chr3R
AE014297.2 19476065
54
TTCGATATTCTCGCTTAACAAATTTTACCTTAGCCGAGAAAACCTTATGGAGTG
CHRXFS012668765
chrX:1-22422827
chrX
AE014298.4 12668765
56
ACTTTAGTGATCATTTAATATTTACAGTTGCGTTTATGTATTTTAAAGCAAACATA
CHR03RFS016687282
chr3R:1-27905053
chr3R
AE014297.2 16687282
45
ACTCACCTTTTCCCTTGGCAACCCTTTCCACACCTTCGCCATTGC
CHRXFS006972360
chrX:1-22422827
chrX
AE014298.4 6972360
45
TTGCAGCTGCTGTGGTGTTGTTGAAGCTGTTGTTCAGATGCAGCT
CHRXFS014694901
chrX:1-22422827
chrX
AE014298.4 14694901
63
GATCGCATTGAAGATGTTCTTTTGAGGATGGAAAGAAATATGATGAAATTATAAGTGATATTG
CHRXFS002002399
chrX:1-22422827
chrX
AE014298.4 2002399
45
CTTTCTCTCCGCAGATGGTTTCATGGCAATCTTTCCGGAAAGGAA
CHRXFS013981944
chrX:1-22422827
chrX
AE014298.4 13981944
45
GTGTGTGTGTGTTCTTGTAGCTTTCGGGCTGGCTGGCTGACTGGG
CHR03RFS013663937
chr3R:1-27905053
chr3R
AE014297.2 13663937
45
TACGTGGGCGGAGGCGATGGGGATCTCGAGTGACTACAAGTCATA
2157868 244707 Kbytes .Supplementary file Size Download File type/resource GPL15641_100718_DM_5_Catalog_tiling_HX1.gff.gz
611.0 Kb
(ftp) (http) GFF
GPL15641_100718_DM_5_Catalog_tiling_HX1.ncd.gz
276 b
(ftp) (http) NCD
GPL15641_100718_DM_5_Catalog_tiling_HX1.ndf.gz
114.7 Mb
(ftp) (http) NDF
GPL15641_100718_DM_5_Catalog_tiling_HX1.pos.gz
21.3 Mb
(ftp) (http) POS
GPL15641_100718_DM_5_Catalog_tiling_HX1_probe_locations.gff.gz
18.0 Mb
(ftp) (http) GFF
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