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Platform GPL15827 Query DataSets for GPL15827
Status Public on Jan 01, 2013
Title Agilent Gene Expression Array for Schizosaccharomyces pombe 8x15K [Agilent-020613 Spom-8x15 Feature Number version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Schizosaccharomyces pombe
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16020613 or 2520613.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jul 18, 2012
Last update date Jul 20, 2012
Contact name Ian O'Brien Carter-O'Connell
Organization name Harvard University
Department MCB
Lab O'Shea
Street address 52 Oxford St. NW 440
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
 
Samples (66) GSM969850, GSM969851, GSM969852, GSM969853, GSM969854, GSM969855 
Series (4)
GSE39478 Genome-Wide Characterization of the Phosphate Starvation Response in Schizosaccharomyces pombe [gene expression data]
GSE39499 Genome-Wide Characterization of the Phosphate Starvation Response in Schizosaccharomyces pombe
GSE60718 A new transcription factor for mitosis: In S. pombe, the RFX transcription factor Sak1 works with forkhead factors to regulate mitotic expression (array)
Relations
Alternative to GPL15300

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
ORF ORF NAME
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING ORF CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_6718_PI391125958 CUST_6718_PI391125958 FALSE gb|SPBC1215.01|gb|SPBC1215.01 SPBC1215.01 unmapped CTCTAAGTGTGGTATCAGCTATAATGCTTTACGTCTATTTTAAGAGAGGTTCAGG
5 96 156 CUST_1145_PI391125958 CUST_1145_PI391125958 FALSE gb|SPAC24H6.07|gb|SPAC24H6.07 SPAC24H6.07 unmapped ACTTCGTATCGAAGACTTTTTGGAGCGTCGTTTACAGACCCAAGTTTTCAAGCTT
6 96 154 NA NA ignore
7 96 152 CUST_8972_PI391125958 CUST_8972_PI391125958 FALSE gb|SPAC222.16c|gb|SPAC222.16c SPAC222.16c unmapped CATTCTGATTTGTGTCAGCAACTAATTGAAGCATCGAAAAACTTTGAAGCTTCCA
8 96 150 CUST_426_PI391125958 CUST_426_PI391125958 FALSE gb|SPAC15A10.03c|gb|SPAC15A10.03c SPAC15A10.03c unmapped CACATGGAATCATTTTACAAATCCCACATTAGACCGAATAGAAGATCACTTGCTA
9 96 148 CUST_7877_PI391125958 CUST_7877_PI391125958 FALSE gb|SPBC15D4.04|gb|SPBC15D4.04 SPBC15D4.04 unmapped CGGTTTAATTATCAGGCATTTTGTCGCTCCTTTAGTGTATCCTGAAGATAACATA
10 96 146 NA NA ignore
11 96 144 NA NA ignore
12 96 142 CUST_9954_PI391125958 CUST_9954_PI391125958 FALSE gb|SPAC23H3.12c|gb|SPAC23H3.12c SPAC23H3.12c unmapped TTGAAGTTGTTTACAAATGGAGATGCTACACCATTAAACGCTCTCATAGGCCACC
13 96 140 CUST_1461_PI391125958 CUST_1461_PI391125958 FALSE gb|SPAC30D11.02c|gb|SPAC30D11.02c SPAC30D11.02c unmapped TTTTTCAGCTAATCACATGTGTATATCCCACGGTACATCGTTCAACATTAAGTAG
14 96 138 NA NA ignore
15 96 136 NA NA ignore
16 96 134 NA NA ignore
17 96 132 CUST_7362_PI391125958 CUST_7362_PI391125958 FALSE gb|SPBC119.01|gb|SPBC119.01 SPBC119.01 unmapped AAAGTATGCGATATCCCATGGATGCTCACAAAAGTGAACTCGAAGGTGTGGAAGA
18 96 130 CUST_4661_PI391125958 CUST_4661_PI391125958 FALSE gb|SPBC29A3.17|gb|SPBC29A3.17 SPBC29A3.17 unmapped AATGGATTTCACCAGTTTGCGGTCTAGTATGGAGTCCTCCCCAAAATCAAAATGA
19 96 128 NA NA ignore
20 96 126 NA NA ignore

Total number of rows: 15744

Table truncated, full table size 1833 Kbytes.




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Supplementary data files not provided
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