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Platform GPL16131 Query DataSets for GPL16131
Status Public on Oct 03, 2012
Title [CytoScanHD_Array] Affymetrix CytoScan HD Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description #%create_date=2011-12-01 GMT-08:00 10:25:44
#%chip_type=CytoScanHD_Array
#%genome-species=Homo sapiens
#%genome-version=hg19
#%genome-version-ucsc=hg19
#%genome-version-ncbi=GRCh37
#%genome-version-create_date=2009-02-00
#%dbSNP_date=2010-09-23
#%dbSNP_version=132
#%dgv-date=2010-10-00
#%dgv-version=10
#%hapmap-date=2008-01-08
#%hapmap-version=23
#%netaffx-annotation-date=2011-12-01
#%netaffx-annotation-netaffx-build=32.1
#%netaffx-annotation-tabular-format-version=1.0
#%netaffx-annotation-docgen-method=com.affymetrix.database.docgen.DocGenDriver
#%netaffx-annotation-docgen-version=cluster_friendly_submission

#%create_date=2011-12-01 GMT-08:00 10:25:09
#%chip_type=CytoScanHD_Array
#%genome-species=Homo sapiens
#%genome-version=hg19
#%genome-version-ucsc=hg19
#%genome-version-ncbi=GRCh37
#%genome-version-create_date=2009-02-00
#%dbSNP_date=2010-09-23
#%dbSNP_version=132
#%dgv-date=2010-10-00
#%dgv-version=10
#%netaffx-annotation-date=2011-12-01
#%netaffx-annotation-netaffx-build=32.1
#%netaffx-annotation-tabular-format-version=1.0
#%netaffx-annotation-docgen-method=com.affymetrix.database.docgen.DocGenDriver
#%netaffx-annotation-docgen-version=cluster_friendly_submission
##This database/product contains information from the Online Mendelian Inheritance in Man(R) (OMIM(R)) database, which has been obtained under
a license from the Johns Hopkins University. This database/product does not represent the entire, unmodified OMIM(R) database, which is availa
ble in its entirety at www.ncbi.nlm.nih.gov/omim/.
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=cytoscan_kit
Submission date Oct 03, 2012
Last update date Jul 13, 2018
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (4983) GSM1014057, GSM1019673, GSM1019674, GSM1019675, GSM1019676, GSM1019677 
Series (136)
GSE41297 SNP array data for embryonal rhabdomyosarcoma in a patient with Costello syndrome
GSE41581 Frequent truncating mutations of STAG2 in bladder cancer
GSE47204 CytoScanHD array Data for Colerectal Tumor and Normal Samples

Data table header descriptions
ID
dbSNP RS ID
Chromosome
Physical Position
Strand
SPOT_ID
RANGE_GB
RANGE_START
RANGE_END

Data table
ID dbSNP RS ID Chromosome Physical Position Strand SPOT_ID RANGE_GB RANGE_START RANGE_END
S-3AAFK rs1466535 12 57534470 - rs1466535
S-3AAFJ rs72925282 4 83904997 + rs72925282
S-3AAFI rs2826163 21 21683874 + rs2826163
S-3AAFH rs176264 14 29162832 + rs176264
S-3AAFG rs524692 6 125419899 - rs524692
S-3AAFF 3 97713361 + chr 3: 40901503
S-3AAFE rs62414793 6 62948241 + rs62414793
S-3AAFD rs72704195 4 175490632 + rs72704195
S-3AAFC 2 40901503 + chr 2: 68072527
S-3AAFB rs10519437 5 115323724 + rs10519437
S-3AAFA rs379462 3 52004317 - rs379462
S-3AAEZ rs3784711 15 68072527 + rs3784711
S-3AAEY rs17236705 8 63095157 + rs17236705
S-3AAEX rs17564689 22 46006110 + rs17564689
S-3AAEW rs1112258 15 26574330 + rs1112258
S-3AAEV rs58172940 9 106367911 + rs58172940
S-3AAEU rs41334344 12 41011120 - rs41334344
S-3AAET 7 31936704 + chr 7: 73568191
S-3AAES rs62299785 4 5509714 + rs62299785
S-3AAER rs709551 3 107079175 + rs709551

Total number of rows: 2822125

Table truncated, full table size 173648 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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