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Platform GPL16604 Query DataSets for GPL16604
Status Public on Feb 08, 2013
Title Agilent-032034 VPC Human 180K v3 (Probe Name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent
Manufacture protocol SurePrint G3 4x180K format, feature and microarray designed using eArray
 
Description annotation from RefSeq and EntrezGene Database (downloaded: April, 2012)
 
Contributor(s) Lehman ML, Nelson CC
Submission date Feb 07, 2013
Last update date Oct 17, 2018
Contact name Colleen Nelson
Organization name Queensland University of Technology; University of British Columbia
Department Institute of Health and Biomedical Innovation; Vancouver Prostate Centre
Street address 199 Ipswich Road
City Brisbane
State/province Queensland
ZIP/Postal code 4102
Country Australia
 
Samples (185) GSM1079614, GSM1079615, GSM1079616, GSM1079617, GSM1079618, GSM1079619 
Series (10)
GSE44143 Gene expression of LNCaP cells grown in polyethlene glycol-based hydrogels alone (monocultures) and grown with human osteoblasts as tissue engineered bone (co-culture) with the presence of synthetic androgen, R1881
GSE44319 The E3 ubiquitin ligase Siah2 contributes to castration-resistant prostate cancer by regulation of androgen receptor transcriptional activity cancer.
GSE61800 The tumor-promoting receptor tyrosine kinase, eEphB4, regulates expression of integrin β8 in prostate cancer cells
Relations
Alternative to GPL25684

Data table header descriptions
ID ProbeName
ControlType Feature type (non-control feature=0)
chr Reporter chromosome (blat:hg19)
RANGE_GB
RANGE_START Reporter chromosome start position (blat:hg19)
RANGE_END Reporter chromosome end position (blat:hg19)
RANGE_STRAND Reporter chromosome strand
symbol Entrez Gene symbol
GeneDescription Entez Gene description
GeneID Entrez Gene identifier
GB_LIST RefSeq identifier
GeneLocation Entrez Gene genomic location
SPOT_ID

Data table
ID ControlType chr RANGE_GB RANGE_START RANGE_END RANGE_STRAND symbol GeneDescription GeneID GB_LIST GeneLocation SPOT_ID
A_14_P100100 0 chr14 NC_000014.8 24012938 24012998 + A_14_P100100
A_14_P100208 0 chr11 NC_000011.9 75512494 75512554 + DGAT2 diacylglycerol O-acyltransferase 2 84649 NM_001253891; NM_032564 11q13.5
A_14_P100325 0 chrX NC_000023.10 102865127 102865187 + A_14_P100325
A_14_P100335 0 chr1 NC_000001.10 220835427 220835487 + MARK1 MAP/microtubule affinity-regulating kinase 1 4139 NM_018650 1q41
A_14_P100337 0 chr12 NC_000012.11 6929707 6929759 + CD4 CD4 molecule 920 NM_000616; NM_001195014; NM_001195015; NM_001195016; NM_001195017 12p13.31
A_14_P100385 0 chr16 NC_000016.9 56642629 56642681 + A_14_P100385
A_14_P100389 0 chr1 NC_000001.10 156590309 156590369 + A_14_P100389
A_14_P100419 0 chr12 NC_000012.11 117227873 117227933 + A_14_P100419
A_14_P100529 0 chr4 NC_000004.11 48491155 48491215 + SLC10A4 solute carrier family 10 (sodium/bile acid cotransporter family), member 4 201780 NM_152679 4p11
A_14_P100533 0 chr9 NC_000009.11 140089860 140089907 + A_14_P100533
A_14_P100535 0 chr2 NC_000002.11 23931344 23931404 + KLHL29 kelch-like 29 (Drosophila) 114818 NM_052920 2p24.1
A_14_P100560 0 chr7 NC_000007.13 139657475 139657535 + TBXAS1 thromboxane A synthase 1 (platelet) 6916 NM_001061; NM_001130966; NM_001166253; NM_001166254; NM_030984; NR_029394 7q34-q35
A_14_P100627 0 chr10 NC_000010.10 94056823 94056883 + A_14_P100627
A_14_P100804 0 chr14 NC_000014.8 64497785 64497845 + SYNE2 spectrin repeat containing, nuclear envelope 2 23224 NM_015180; NM_182914 14q23.2
A_14_P100819 0 chr3 NC_000003.11 32398946 32399005 + CMTM8 CKLF-like MARVEL transmembrane domain containing 8 152189 NM_178868 3p22.3
A_14_P100933 0 chr18 NC_000018.9 46386593 46386653 + CTIF CBP80/20-dependent translation initiation factor 9811 NM_001142397; NM_014772 18q21.1
A_14_P100966 0 chr1 NC_000001.10 171283379 171283439 + A_14_P100966
A_14_P100985 0 chr15 NC_000015.9 63343118 63343178 + A_14_P100985
A_14_P101047 0 chr18 NC_000018.9 57314770 57314830 + A_14_P101047
A_14_P101187 0 chr10 NC_000010.10 23409843 23409903 + MSRB2 methionine sulfoxide reductase B2 22921 NM_012228 10p12

Total number of rows: 175337

Table truncated, full table size 18774 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16604_Agilent-032034_VPC_Human_180K_annotation.txt.gz 8.4 Mb (ftp)(http) TXT
GPL16604_annotation_update_020813.txt.gz 3.9 Mb (ftp)(http) TXT

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