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Platform GPL16686 Query DataSets for GPL16686
Status Public on Feb 14, 2013
Title [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site

 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html

November 15, 2012: HuGene-2_0-st-v1.na33.hg19.transcript.csv
 
Submission date Feb 14, 2013
Last update date Feb 21, 2020
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (10449) GSM1086143, GSM1086144, GSM1086145, GSM1086146, GSM1086147, GSM1086148 
Series (808)
GSE39615 Transcriptomic landscape of developing Presomitic Mesoderm (PSM) from Tailbud to somite in E9.5 mouse embryo and in in vitro differentiated Paraxial mesoderm derived from mouse embryonic stem cells (mESCs).
GSE44039 TET1 is a maintenance DNA demethylase that prevents methylation spreading in adult cells
GSE44532 Derivation of Neural Stem Cells from human adult peripheral CD34+ Cells for an Autologous Model of Neuroinflammation
Relations
Alternative to GPL17930 (alternative CDF)
Alternative to GPL18476 (alternative CDF)
Alternative to GPL19803 (alternative CDF [hugene20st_Hs_ENTREZG, Brainarray version 18.0.0])
Alternative to GPL20103 (alternative CDF [hugene20st_Hs_ENTREZG, Brainarray version 19.0.0])
Alternative to GPL21563 (alternative CDF)
Alternative to GPL17889 (alternative CDF [HuGene20stv1_Hs_ENTREZG_16.0.0])
Alternative to GPL24989 (alternative CDF [HuGene20stv1_Hs_ENTREZG_22.0.0])
Alternative to GPL25381 (alternative CDF [HuGene20stv1_Hs_ENTREZG_21.0.0])
Alternative to GPL25483 (Gene symbol version)
Alternative to GPL26088 (alternative CDF [Hugene20st_Hs_ENST_19.0.0])
Alternative to GPL27949 (alternative CDF [HuGene20st_Hs_ENTREZG_24.0.0])
Alternative to GPL26944 (alternative CDF [hugene20st_Hs_ENTREZG, Brainarray version 23])

Data table header descriptions
ID transcript_cluster_id
RANGE_STRAND strand (+|-)
RANGE_START start (integer). Coordinates are standard 1-based (length=stop-start+1).
RANGE_END
total_probes Total number of probes contained by this transcript cluster.
GB_ACC GenBank and RefSeq Accessions from mrna_assignment column
SPOT_ID genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
RANGE_GB NCBI RefSeq for chromosome of current build

Data table
ID RANGE_STRAND RANGE_START RANGE_END total_probes GB_ACC SPOT_ID RANGE_GB
16657436 + 12190 13639 25 NR_046018 chr1:12190-13639 NC_000001.10
16657440 + 29554 31109 28 chr1:29554-31109 NC_000001.10
16657445 + 69091 70008 8 chr1:69091-70008 NC_000001.10
16657447 + 160446 161525 13 chr1:160446-161525 NC_000001.10
16657450 + 317811 328581 36 NR_024368 chr1:317811-328581 NC_000001.10
16657469 + 329790 342507 27 chr1:329790-342507 NC_000001.10
16657473 + 367640 368634 25 chr1:367640-368634 NC_000001.10
16657476 + 459656 461954 27 NR_029406 chr1:459656-461954 NC_000001.10
16657480 + 523009 532878 12 chr1:523009-532878 NC_000001.10
16657485 + 557143 566063 13 XR_132471 chr1:557143-566063 NC_000001.10
16657489 + 696291 697369 12 chr1:696291-697369 NC_000001.10
16657492 + 714162 745440 22 chr1:714162-745440 NC_000001.10
16657502 + 721320 722513 16 chr1:721320-722513 NC_000001.10
16657506 + 752751 755214 22 chr1:752751-755214 NC_000001.10
16657509 + 756056 758975 17 chr1:756056-758975 NC_000001.10
16657514 + 762988 789791 29 NR_047526 chr1:762988-789791 NC_000001.10
16657527 + 840487 841186 23 chr1:840487-841186 NC_000001.10
16657529 + 846815 850735 20 chr1:846815-850735 NC_000001.10
16657534 + 860260 879961 22 NM_152486 chr1:860260-879961 NC_000001.10
16657554 + 895967 901099 28 NM_198317 chr1:895967-901099 NC_000001.10

Total number of rows: 53981

Table truncated, full table size 3506 Kbytes.




Download family Format
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MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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