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Platform GPL17117 Query DataSets for GPL17117
Status Public on May 06, 2013
Title [RaGene-2_0-st] Affymetrix Rat Gene 2.0 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Rattus norvegicus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html

#%create_date=Thu Mar 28 17:32:27 2013 PDT
#%chip_type=RaGene-2_0-st-v1
#%lib_set_name=RaGene-2_0-st
#%lib_set_version=v1
#%genome-species=Rattus norvegicus
#%genome-version=rn4
#%genome-version-ucsc=rn4
#%genome-version-ncbi=Rnor3.4
#%genome-version-create_date=2004-11-00
#%genome-lifted_from-species=Rattus norvegicus
#%genome-lifted_from-version-ucsc=rn4
#%genome-lifted_from-version-ncbi=Rnor3.4
#%netaffx-annotation-date=2012-09-30
#%netaffx-annotation-netaffx-build=33

 
Web link http://www.affymetrix.com/support/technical/libraryfilesmain.affx
Submission date May 06, 2013
Last update date Feb 07, 2019
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (1442) GSM1134662, GSM1134663, GSM1134664, GSM1134665, GSM1134666, GSM1134667 
Series (113)
GSE46696 Gene expression profiling in subarachnoid haemorrhage
GSE51824 Reversible and irreversible differentiation of cardiac fibroblasts
GSE54294 Gene Expression Profiling of Peri-implant Healing of PLGA-Li+ Implants Suggests an Activated Wnt Signaling Pathway in vivo
Relations
Alternative to GPL17799 (Alternative CDF)
Alternative to GPL20091 (alternative CDF [ragene20st_Rn_ENST_19.0.0])
Alternative to GPL26164 (Alternative CDF [ragene20st_Rn_ENTREZG_21])

Data table header descriptions
ID transcript_cluster_id
probeset_id
seqname chromosome number
strand
start
stop
total_probes Total number of probes contained by this transcript cluster.
gene_assignment Gene information for each assigned mRNA for mRNAs that corresponds to known genes (multipart).
mrna_assignment Description of the public mRNAs that should be detected by the sets within this transcript cluster based on sequence alignment (multipart).
swissprot
unigene
GO_biological_process
GO_cellular_component
GO_molecular_function
pathway
protein_domains
crosshyb_type
category Array design category of the transcript cluster
SPOT_ID genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
GB_ACC GenBank Accession number

Data table
ID probeset_id seqname strand start stop total_probes gene_assignment mrna_assignment swissprot unigene GO_biological_process GO_cellular_component GO_molecular_function pathway protein_domains crosshyb_type category SPOT_ID GB_ACC
17610302 17610302 chr1 + 5473 17577 9 ENSRNOT00000042693 // LOC689435 // similar to vomeronasal 2, receptor, 1 // 14p22 // 689435 /// ENSRNOT00000041082 // LOC689435 // similar to vomeronasal 2, receptor, 1 // 14p22 // 689435 ENSRNOT00000042693 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:8316:17577:1 gene:ENSRNOG00000021490 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 44 // 4 // 4 // 0 /// ENSRNOT00000041082 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:8956:9955:1 gene:ENSRNOG00000021490 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 44 // 4 // 4 // 0 --- ENSRNOT00000042693 // Rn.225766 // --- /// ENSRNOT00000041082 // Rn.225766 // --- --- ENSRNOT00000042693 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSRNOT00000042693 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENSRNOT00000041082 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSRNOT00000041082 // GO:0016021 // integral to membrane // inferred from electronic annotation ENSRNOT00000042693 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// ENSRNOT00000041082 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation --- ENSRNOT00000042693 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000042693 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000042693 // Pfam // IPR017978 // GPCR, family 3, C-terminal /// ENSRNOT00000041082 // Pfam // IPR001828 // Extracellular ligand-binding receptor 1 main ENSRNOT00000042693
17610314 17610314 chr1 + 114953 115930 10 --- ENSRNOT00000043839 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:114953:115930:1 gene:ENSRNOG00000029999 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 10 // 10 // 0 --- --- --- --- --- --- ENSRNOT00000043839 // Pfam // IPR017978 // GPCR, family 3, C-terminal 3 main ENSRNOT00000043839
17610316 17610316 chr1 + 311443 320731 8 --- ENSRNOT00000044669 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:311443:320222:1 gene:ENSRNOG00000005949 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 /// ENSRNOT00000043877 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:311443:320141:1 gene:ENSRNOG00000005949 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 38 // 3 // 3 // 0 --- --- --- --- --- --- ENSRNOT00000044669 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000044669 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000044669 // Pfam // IPR017978 // GPCR, family 3, C-terminal /// ENSRNOT00000043877 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000043877 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000043877 // Pfam // IPR017978 // GPCR, family 3, C-terminal 3 main ENSRNOT00000044669
17610327 17610327 chr1 + 678964 680435 14 --- ENSRNOT00000051321 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:678964:680435:1 gene:ENSRNOG00000042157 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 71 // 10 // 10 // 0 --- --- --- --- --- --- ENSRNOT00000051321 // Pfam // IPR017978 // GPCR, family 3, C-terminal 3 main ENSRNOT00000051321
17610330 17610330 chr1 + 760658 765914 21 ENSRNOT00000051591 // LOC682996 // similar to vomeronasal 2, receptor, 1 // --- // 682996 /// ENSRNOT00000051591 // Vom2r2 // vomeronasal 2 receptor, 2 // 1p13 // 292438 ENSRNOT00000051591 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:760754:765914:1 gene:ENSRNOG00000023718 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 21 // 21 // 0 --- ENSRNOT00000051591 // Rn.217623 // --- --- ENSRNOT00000051591 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSRNOT00000051591 // GO:0016021 // integral to membrane // inferred from electronic annotation ENSRNOT00000051591 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation --- ENSRNOT00000051591 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000051591 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000051591 // Pfam // IPR017978 // GPCR, family 3, C-terminal 3 main ENSRNOT00000051591
17610335 17610335 chr1 + 1009412 1021941 14 NM_001099460 // Vom2r3 // vomeronasal 2 receptor, 3 // 1p13 // 502213 /// ENSRNOT00000044213 // Vom2r3 // vomeronasal 2 receptor, 3 // 1p13 // 502213 /// ENSRNOT00000043841 // Vom2r3 // vomeronasal 2 receptor, 3 // 1p13 // 502213 NM_001099460 // RefSeq // Rattus norvegicus vomeronasal 2 receptor, 3 (Vom2r3), mRNA. // chr1 // 100 // 100 // 14 // 14 // 0 /// ENSRNOT00000044213 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1009412:1021923:1 gene:ENSRNOG00000040335 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 14 // 14 // 0 /// ENSRNOT00000043841 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1009412:1021923:1 gene:ENSRNOG00000040335 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 14 // 14 // 0 --- NM_001099460 // Rn.217622 // --- /// ENSRNOT00000044213 // Rn.217622 // --- /// ENSRNOT00000043841 // Rn.217622 // --- --- --- --- --- ENSRNOT00000044213 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000044213 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000044213 // Pfam // IPR017978 // GPCR, family 3, C-terminal /// ENSRNOT00000043841 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000043841 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000043841 // Pfam // IPR017978 // GPCR, family 3, C-terminal 3 main NM_001099460
17610342 17610342 chr1 + 1234908 1243561 8 NM_001099462 // Vom2r5 // vomeronasal 2 receptor, 5 // 1p13 // 679691 /// ENSRNOT00000041332 // Vom2r5 // vomeronasal 2 receptor, 5 // 1p13 // 679691 NM_001099462 // RefSeq // Rattus norvegicus vomeronasal 2 receptor, 5 (Vom2r5), mRNA. // chr1 // 100 // 100 // 8 // 8 // 0 /// ENSRNOT00000041332 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1234908:1243561:1 gene:ENSRNOG00000032365 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 --- NM_001099462 // Rn.217640 // --- /// ENSRNOT00000041332 // Rn.217640 // --- --- NM_001099462 // GO:0005886 // plasma membrane // inferred from electronic annotation /// NM_001099462 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENSRNOT00000041332 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSRNOT00000041332 // GO:0016021 // integral to membrane // inferred from electronic annotation NM_001099462 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// ENSRNOT00000041332 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation --- ENSRNOT00000041332 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000041332 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000041332 // Pfam // IPR017978 // GPCR, family 3, C-terminal 1 main NM_001099462
17610349 17610349 chr1 + 1287086 1295756 10 NM_001099459 // Vom2r6 // vomeronasal 2 receptor, 6 // 1p13 // 308257 /// ENSRNOT00000045627 // Vom2r6 // vomeronasal 2 receptor, 6 // 1p13 // 308257 NM_001099459 // RefSeq // Rattus norvegicus vomeronasal 2 receptor, 6 (Vom2r6), mRNA. // chr1 // 100 // 100 // 10 // 10 // 0 /// ENSRNOT00000045627 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1287086:1295756:1 gene:ENSRNOG00000031001 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 10 // 10 // 0 /// GENSCAN00000017578 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:1234908:1295756:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 10 // 10 // 0 --- NM_001099459 // Rn.217639 // --- /// ENSRNOT00000045627 // Rn.217639 // --- --- NM_001099459 // GO:0005886 // plasma membrane // inferred from electronic annotation /// NM_001099459 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENSRNOT00000045627 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSRNOT00000045627 // GO:0016021 // integral to membrane // inferred from electronic annotation NM_001099459 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// ENSRNOT00000045627 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation --- ENSRNOT00000045627 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000045627 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000045627 // Pfam // IPR017978 // GPCR, family 3, C-terminal 1 main NM_001099459
17610356 17610356 chr1 + 1314038 1316239 13 --- ENSRNOT00000062030 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1314038:1316239:1 gene:ENSRNOG00000042852 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 13 // 13 // 0 --- --- --- --- --- --- --- 3 main ENSRNOT00000062030
17610361 17610361 chr1 + 1418266 1418387 17 --- ENSRNOT00000052842 // ENSEMBL // ncrna:snoRNA chromosome:RGSC3.4:1:1418266:1418387:1 gene:ENSRNOG00000034719 gene_biotype:snoRNA transcript_biotype:snoRNA // chr1 // 100 // 100 // 17 // 17 // 0 --- --- --- --- --- --- --- 3 main ENSRNOT00000052842
17610363 17610363 chr1 + 1472487 1475486 26 --- ENSRNOT00000062035 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1472487:1475486:1 gene:ENSRNOG00000042401 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 26 // 26 // 0 --- --- --- --- --- --- --- 1 main ENSRNOT00000062035
17610368 17610368 chr1 + 1498164 1500699 26 NM_001099460 // Vom2r3 // vomeronasal 2 receptor, 3 // 1p13 // 502213 /// ENSRNOT00000044213 // Vom2r3 // vomeronasal 2 receptor, 3 // 1p13 // 502213 /// ENSRNOT00000046586 // Vom2r1 // vomeronasal 2 receptor, 1 // 1p13 // 678740 /// ENSRNOT00000043841 // Vom2r3 // vomeronasal 2 receptor, 3 // 1p13 // 502213 NM_001099460 // RefSeq // Rattus norvegicus vomeronasal 2 receptor, 3 (Vom2r3), mRNA. // chr1 // 42 // 100 // 11 // 26 // 0 /// ENSRNOT00000044213 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1009412:1021923:1 gene:ENSRNOG00000040335 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 42 // 100 // 11 // 26 // 0 /// ENSRNOT00000046586 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:245888:356821:-1 gene:ENSRNOG00000032583 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 54 // 100 // 14 // 26 // 0 /// ENSRNOT00000043841 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1009412:1021923:1 gene:ENSRNOG00000040335 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 42 // 100 // 11 // 26 // 0 /// ENSRNOT00000050328 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1498164:1500699:1 gene:ENSRNOG00000034286 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 26 // 26 // 0 /// ENSRNOT00000062058 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1636159:1642167:1 gene:ENSRNOG00000033826 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 50 // 13 // 13 // 0 /// GENSCAN00000017565 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:1460550:1504266:1 transcript_biotype:protein_coding // chr1 // 100 // 54 // 14 // 14 // 0 /// GENSCAN00000032208 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:245888:262758:-1 transcript_biotype:protein_coding // chr1 // 100 // 38 // 10 // 10 // 0 /// GENSCAN00000032209 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:5588:115834:1 transcript_biotype:protein_coding // chr1 // 62 // 50 // 8 // 13 // 0 /// GENSCAN00000017571 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:1176023:1181269:-1 transcript_biotype:protein_coding // chr1 // 46 // 50 // 6 // 13 // 0 /// GENSCAN00000017561 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:1635460:1641473:1 transcript_biotype:protein_coding // chr1 // 100 // 15 // 4 // 4 // 0 --- NM_001099460 // Rn.217622 // --- /// ENSRNOT00000044213 // Rn.217622 // --- /// ENSRNOT00000046586 // Rn.145806 // --- /// ENSRNOT00000043841 // Rn.217622 // --- --- ENSRNOT00000046586 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSRNOT00000046586 // GO:0016021 // integral to membrane // inferred from electronic annotation ENSRNOT00000046586 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation --- ENSRNOT00000044213 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000044213 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000044213 // Pfam // IPR017978 // GPCR, family 3, C-terminal /// ENSRNOT00000046586 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000046586 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000046586 // Pfam // IPR017978 // GPCR, family 3, C-terminal /// ENSRNOT00000043841 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000043841 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000043841 // Pfam // IPR017978 // GPCR, family 3, C-terminal /// ENSRNOT00000050328 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000062058 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000062058 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000062058 // Pfam // IPR017978 // GPCR, family 3, C-terminal 3 main NM_001099460
17610371 17610371 chr1 + 1503580 1505189 25 NM_001099460 // Vom2r3 // vomeronasal 2 receptor, 3 // 1p13 // 502213 /// ENSRNOT00000044213 // Vom2r3 // vomeronasal 2 receptor, 3 // 1p13 // 502213 /// ENSRNOT00000043841 // Vom2r3 // vomeronasal 2 receptor, 3 // 1p13 // 502213 /// ENSRNOT00000043841 // Vom2r3 // vomeronasal 2 receptor, 3 // 1p13 // 502213 /// ENSRNOT00000043841 // Vom2r3 // vomeronasal 2 receptor, 3 // 1p13 // 502213 NM_001099460 // RefSeq // Rattus norvegicus vomeronasal 2 receptor, 3 (Vom2r3), mRNA. // chr1 // 40 // 80 // 8 // 20 // 0 /// ENSRNOT00000044213 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1009412:1021923:1 gene:ENSRNOG00000040335 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 40 // 80 // 8 // 20 // 0 /// ENSRNOT00000043841 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1009412:1021923:1 gene:ENSRNOG00000040335 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 40 // 80 // 8 // 20 // 0 /// ENSRNOT00000002766 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1503580:1505189:1 gene:ENSRNOG00000023682 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 96 // 24 // 24 // 0 /// ENSRNOT00000062058 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1636159:1642167:1 gene:ENSRNOG00000033826 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 80 // 20 // 20 // 0 /// GENSCAN00000017565 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:1460550:1504266:1 transcript_biotype:protein_coding // chr1 // 100 // 64 // 16 // 16 // 0 /// GENSCAN00000017561 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:1635460:1641473:1 transcript_biotype:protein_coding // chr1 // 100 // 64 // 16 // 16 // 0 /// GENSCAN00000032209 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:5588:115834:1 transcript_biotype:protein_coding // chr1 // 40 // 80 // 8 // 20 // 0 /// ENSRNOT00000046586 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:245888:356821:-1 gene:ENSRNOG00000032583 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 35 // 80 // 7 // 20 // 1 /// ENSRNOT00000044187 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:8884:16850:1 gene:ENSRNOG00000021490 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 26 // 76 // 5 // 19 // 1 /// GENSCAN00000032208 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:245888:262758:-1 transcript_biotype:protein_coding // chr1 // 35 // 80 // 7 // 20 // 1 /// GENSCAN00000017571 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:1176023:1181269:-1 transcript_biotype:protein_coding // chr1 // 30 // 40 // 3 // 10 // 1 --- NM_001099460 // Rn.217622 // --- /// ENSRNOT00000044213 // Rn.217622 // --- /// ENSRNOT00000043841 // Rn.217622 // --- /// ENSRNOT00000043841 // Rn.217622 // --- /// ENSRNOT00000043841 // Rn.217622 // --- --- --- --- --- ENSRNOT00000044213 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000044213 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000044213 // Pfam // IPR017978 // GPCR, family 3, C-terminal /// ENSRNOT00000043841 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000043841 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000043841 // Pfam // IPR017978 // GPCR, family 3, C-terminal /// ENSRNOT00000043841 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000043841 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000043841 // Pfam // IPR017978 // GPCR, family 3, C-terminal /// ENSRNOT00000043841 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000043841 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000043841 // Pfam // IPR017978 // GPCR, family 3, C-terminal /// ENSRNOT00000002766 // Pfam // IPR017978 // GPCR, family 3, C-terminal /// ENSRNOT00000062058 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000062058 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000062058 // Pfam // IPR017978 // GPCR, family 3, C-terminal 3 main NM_001099460
17610374 17610374 chr1 + 1636159 1642167 8 --- ENSRNOT00000062058 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:1636159:1642167:1 gene:ENSRNOG00000033826 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 --- --- --- --- --- --- ENSRNOT00000062058 // Pfam // IPR001828 // Extracellular ligand-binding receptor /// ENSRNOT00000062058 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000062058 // Pfam // IPR017978 // GPCR, family 3, C-terminal 3 main ENSRNOT00000062058
17610381 17610381 chr1 + 1694318 1696878 11 --- GENSCAN00000017581 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:1689106:1699145:1 transcript_biotype:protein_coding // chr1 // 100 // 36 // 4 // 4 // 0 --- --- --- --- --- --- --- 1 main GENSCAN00000017581
17610386 17610386 chr1 + 1757897 1764149 8 --- GENSCAN00000017557 // ENSEMBL // cdna:genscan chromosome:RGSC3.4:1:1757897:1764149:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 --- --- --- --- --- --- --- 3 main GENSCAN00000017557
17610392 17610392 chr1 + 1962595 1962716 16 --- ENSRNOT00000053783 // ENSEMBL // ncrna:snoRNA chromosome:RGSC3.4:1:1962595:1962716:1 gene:ENSRNOG00000035660 gene_biotype:snoRNA transcript_biotype:snoRNA // chr1 // 100 // 100 // 16 // 16 // 0 --- --- --- --- --- --- --- 3 main ENSRNOT00000053783
17610394 17610394 chr1 + 2005661 2008852 13 --- ENSRNOT00000029038 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:2005661:2008852:1 gene:ENSRNOG00000023667 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 13 // 13 // 0 --- --- --- --- --- --- --- 1 main ENSRNOT00000029038
17610400 17610400 chr1 + 2255892 2284328 23 NM_001106217 // Lrp11 // low density lipoprotein receptor-related protein 11 // 1p13 // 292462 /// ENSRNOT00000019181 // Lrp11 // low density lipoprotein receptor-related protein 11 // 1p13 // 292462 NM_001106217 // RefSeq // Rattus norvegicus low density lipoprotein receptor-related protein 11 (Lrp11), mRNA. // chr1 // 100 // 83 // 19 // 19 // 0 /// ENSRNOT00000019181 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:2256218:2282715:1 gene:ENSRNOG00000014303 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 78 // 18 // 18 // 0 --- NM_001106217 // Rn.40930 // adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| small intestine| spleen| metamorphosing embryo| fetus| juvenile| adult /// ENSRNOT00000019181 // Rn.40930 // adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| small intestine| spleen| metamorphosing embryo| fetus| juvenile| adult --- --- --- --- ENSRNOT00000019181 // Pfam // IPR002172 // Low-density lipoprotein (LDL) receptor class A repeat /// ENSRNOT00000019181 // Pfam // IPR011106 // Seven cysteines, N-terminal 1 main NM_001106217
17610410 17610410 chr1 + 2375233 2383106 20 --- ENSRNOT00000020098 // ENSEMBL // cdna:known chromosome:RGSC3.4:1:2375233:2383106:1 gene:ENSRNOG00000014916 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 20 // 20 // 0 --- --- --- --- --- --- ENSRNOT00000020098 // Pfam // IPR017892 // Protein kinase, C-terminal 1 main ENSRNOT00000020098

Total number of rows: 36875

Table truncated, full table size 91701 Kbytes.




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