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Platform GPL17233 Query DataSets for GPL17233
Status Public on Jan 10, 2014
Title Agilent-021506 Plasmodium falciparum UP1_01_Of_1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Plasmodium falciparum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Expression array of P.falciparum
Arrays of this design have barcodes that begin with 16021506 or 2521506.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jun 03, 2013
Last update date Jan 10, 2014
Contact name Shaun Reeksting
Phone 0027124202990
Organization name University of Pretoria
Department Biochemistry
Lab Molecular parasitology
Street address Lunnon Rd.
City Pretoria
State/province Gauteng
ZIP/Postal code 0002
Country South Africa
 
Samples (46) GSM1153149, GSM1153150, GSM1153151, GSM1153152, GSM1153153, GSM1153154 
Series (2)
GSE47611 4PEHz-treated P.falciparum parasites vs. untreated extracted at timepoints t1 (12 Hours post invasion or HPI), t2 (24 HPI) and t3 (36 HPI)
GSE92289 Global transcriptomic changes of either cell cycle arrested parasites or cell cycle re-entered asexual P. falciparum 3D7 parasites.

Data table header descriptions
ID Agilent feature number
ORF
SPOT_ID
SEQUENCE Sequence

Data table
ID ORF SPOT_ID SEQUENCE
PFL1900w PFL1900w CTATTTATAAAAGGGAAAGAAACATTATTATTGGAAGGCATGAATGATGGTAAGTTAGAT
PFI0170w PFI0170w CATGAATAATAATAGCGGAACAAATATAAACACAAACGCAAATACAAATAATAATATGTG
PF14_0283a PF14_0283a TTGTAAATATATCAAATAAAAATATTCCGTGGATGTTAATCGTTCATTTTAAAGGGGAAG
PFI0135cb PFI0135cb TTTTTAAAAGAAAATGTTGGTGTAAAAATTACTGGTCCATGTGATGAAGGGTTCGGTTTG
PFB0280w PFB0280w ATGATTTTTATGTTGATACAATAAACCAACCCGCAAATACATTATTATTTGAAAAACGCC
PFF0835w PFF0835w ACGAAAGTGTAAAAAATGTAGAAACCAGAAGAGAAGATTTAACCAACAAAATTAAAGGTA
PF10_0112 PF10_0112 CAAGGAAAAACAAAACCAGAAAAAAAAAGAAGATGCAATGCTAAATAATGATTACAATGC
PFE0765ws PFE0765ws AGAAATTTATTTTCTTAGTGTTATCAATGCATCCGTTAAAACGTTATTTCCTGTTGTTGT
PF07_0036s PF07_0036s TTACCCTTTGTTGAGGAGCATGAACATGTAAAAGATAAAAATGATAATGATAAATGTATA
PFB0070w PFB0070w GGGAGAAAATTCATCGACACAACCAATAGATAATAAATCACATGAAAATATTACAGAATA
PF07_0130 PF07_0130 TTATGATTCTATGTCTTCTGCTATAAAATCAGTAGGTACAGCAGTTTGTGTTGCTGATTT
PF14_0034s PF14_0034s GGTTCTGTATATAAATGGAAAGAGAATTTTTGGTTTGCTTTATGGCATAGTTTTTCTTTT
PFD0905ws PFD0905ws TTTTATTAGAACCAAATTGAAAAGTGGAAAAGTCGCTGTCTTGAAAAATCCAAAAATTCT
PF14_0006 PF14_0006 GGAATCCAAGGGTGTTGAAACAATTATTGGAATATTAGAACAATATTACTCTATATATGA
PFD0985wf PFD0985wf GTGGTGATTATGATGAGAAGGAAGACGATTTATTAGATGAAAATAAGAATGGATTAAATT
pla_rpl14 pla_rpl14 ATATTTGTACTTTAAATAAATATAAAAATCCTAAATATGGTGATATAGTTATAGGAGTAG
PFL2640cs PFL2640cs AGTGTTATGGGATCTGACTAGTTTAATTAAGGCTAAAGTTATAGAAAATTTTGTTACTCC
PF08_0093s PF08_0093s GGAGCCTTATCCAAATATATTGCAATCATTTTTACGTATCCATTATATACCATTAAAATG
PFI0820ca PFI0820ca CGAATGTTTATACCAATGTTCCACATGGTTATCAACTTAACTACCCTGGTAATTTAGATT
MAL8P1.16s MAL8P1.16s CCTTCAGTTGATCTTTTTGGTCATATAGGTGGATTCCTTTGTGGAGCCTTTTTATGTTGT

Total number of rows: 12468

Table truncated, full table size 1006 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL17233_021506_D_GEO_20080918.txt.gz 417.2 Kb (ftp)(http) TXT

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