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Status
Public on Jan 10, 2014
Title
Agilent-021506 Plasmodium falciparum UP1_01_Of_1
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Plasmodium falciparum
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Expression array of P.falciparum Arrays of this design have barcodes that begin with 16021506 or 2521506. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jun 03, 2013
Last update date
Jan 10, 2014
Contact name
Shaun Reeksting
Phone
0027124202990
Organization name
University of Pretoria
Department
Biochemistry
Lab
Molecular parasitology
Street address
Lunnon Rd.
City
Pretoria
State/province
Gauteng
ZIP/Postal code
0002
Country
South Africa
Samples (46)
GSM1153149 , GSM1153150 , GSM1153151 , GSM1153152 , GSM1153153 , GSM1153154
GSM1153155 ,
GSM1153156 ,
GSM1153157 ,
GSM1153158 ,
GSM1153159 ,
GSM1153160 ,
GSM1153161 ,
GSM1153162 ,
GSM2425330 ,
GSM2425331 ,
GSM2425332 ,
GSM2425333 ,
GSM2425334 ,
GSM2425335 ,
GSM2425336 ,
GSM2425337 ,
GSM2425338 ,
GSM2425339 ,
GSM2425340 ,
GSM2425341 ,
GSM2425342 ,
GSM2425343 ,
GSM2425344 ,
GSM2425345 ,
GSM2425346 ,
GSM2425347 ,
GSM2425348 ,
GSM2425349 ,
GSM2425350 ,
GSM2425351 ,
GSM2425352 ,
GSM2425353 ,
GSM2425354 ,
GSM2425355 ,
GSM2425356 ,
GSM2425357 ,
GSM2425358 ,
GSM2425359 ,
GSM2425360 ,
GSM2425361
Series (2)
GSE47611
4PEHz-treated P.falciparum parasites vs. untreated extracted at timepoints t1 (12 Hours post invasion or HPI), t2 (24 HPI) and t3 (36 HPI)
GSE92289
Global transcriptomic changes of either cell cycle arrested parasites or cell cycle re-entered asexual P. falciparum 3D7 parasites.
Data table header descriptions
ID
Agilent feature number
ORF
SPOT_ID
SEQUENCE
Sequence
Data table
ID
ORF
SPOT_ID
SEQUENCE
PFL1900w
PFL1900w
CTATTTATAAAAGGGAAAGAAACATTATTATTGGAAGGCATGAATGATGGTAAGTTAGAT
PFI0170w
PFI0170w
CATGAATAATAATAGCGGAACAAATATAAACACAAACGCAAATACAAATAATAATATGTG
PF14_0283a
PF14_0283a
TTGTAAATATATCAAATAAAAATATTCCGTGGATGTTAATCGTTCATTTTAAAGGGGAAG
PFI0135cb
PFI0135cb
TTTTTAAAAGAAAATGTTGGTGTAAAAATTACTGGTCCATGTGATGAAGGGTTCGGTTTG
PFB0280w
PFB0280w
ATGATTTTTATGTTGATACAATAAACCAACCCGCAAATACATTATTATTTGAAAAACGCC
PFF0835w
PFF0835w
ACGAAAGTGTAAAAAATGTAGAAACCAGAAGAGAAGATTTAACCAACAAAATTAAAGGTA
PF10_0112
PF10_0112
CAAGGAAAAACAAAACCAGAAAAAAAAAGAAGATGCAATGCTAAATAATGATTACAATGC
PFE0765ws
PFE0765ws
AGAAATTTATTTTCTTAGTGTTATCAATGCATCCGTTAAAACGTTATTTCCTGTTGTTGT
PF07_0036s
PF07_0036s
TTACCCTTTGTTGAGGAGCATGAACATGTAAAAGATAAAAATGATAATGATAAATGTATA
PFB0070w
PFB0070w
GGGAGAAAATTCATCGACACAACCAATAGATAATAAATCACATGAAAATATTACAGAATA
PF07_0130
PF07_0130
TTATGATTCTATGTCTTCTGCTATAAAATCAGTAGGTACAGCAGTTTGTGTTGCTGATTT
PF14_0034s
PF14_0034s
GGTTCTGTATATAAATGGAAAGAGAATTTTTGGTTTGCTTTATGGCATAGTTTTTCTTTT
PFD0905ws
PFD0905ws
TTTTATTAGAACCAAATTGAAAAGTGGAAAAGTCGCTGTCTTGAAAAATCCAAAAATTCT
PF14_0006
PF14_0006
GGAATCCAAGGGTGTTGAAACAATTATTGGAATATTAGAACAATATTACTCTATATATGA
PFD0985wf
PFD0985wf
GTGGTGATTATGATGAGAAGGAAGACGATTTATTAGATGAAAATAAGAATGGATTAAATT
pla_rpl14
pla_rpl14
ATATTTGTACTTTAAATAAATATAAAAATCCTAAATATGGTGATATAGTTATAGGAGTAG
PFL2640cs
PFL2640cs
AGTGTTATGGGATCTGACTAGTTTAATTAAGGCTAAAGTTATAGAAAATTTTGTTACTCC
PF08_0093s
PF08_0093s
GGAGCCTTATCCAAATATATTGCAATCATTTTTACGTATCCATTATATACCATTAAAATG
PFI0820ca
PFI0820ca
CGAATGTTTATACCAATGTTCCACATGGTTATCAACTTAACTACCCTGGTAATTTAGATT
MAL8P1.16s
MAL8P1.16s
CCTTCAGTTGATCTTTTTGGTCATATAGGTGGATTCCTTTGTGGAGCCTTTTTATGTTGT
Total number of rows: 12468 Table truncated, full table size 1006 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL17233_021506_D_GEO_20080918.txt.gz
417.2 Kb
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