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Status
Public on Dec 04, 2014
Title
[MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [custom CDF: MoEx10stv1_Mm_ENST ver. 15]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
Affymetrix
Manufacture protocol
Affymetrix
Description
This is identical to GPL6096 but a custom cdf environment was used to extract data. Microarray analysis was performed using PGF file derived from the CDF file obtained from the University of Michigan CustomCDF probe-to-probeset mappings (Custom CDF, ENST, version 15). The PGF file, the Affymetrix CLF file describing the probe layout on the microarray, and the annotation file describing each probeset are linked below as supplementary files.
Submission date
Nov 18, 2013
Last update date
Dec 04, 2014
Contact name
Stephen Ramsey
Organization name
Oregon State University
Department
Biomedical Sciences
Street address
Dryden Hall 208A
City
Corvallis
State/province
OR
ZIP/Postal code
97331
Country
USA
Samples (32)
GSM1267698 , GSM1267699 , GSM1267700 , GSM1267701 , GSM1267702 , GSM1267703
GSM1267704 ,
GSM1267705 ,
GSM1267706 ,
GSM1267707 ,
GSM1267708 ,
GSM1267709 ,
GSM1267710 ,
GSM1267711 ,
GSM1267712 ,
GSM1267713 ,
GSM1267714 ,
GSM1267715 ,
GSM1267716 ,
GSM1267717 ,
GSM1267718 ,
GSM1267719 ,
GSM1267720 ,
GSM1267721 ,
GSM1267722 ,
GSM1267723 ,
GSM1422225 ,
GSM1422226 ,
GSM1422227 ,
GSM1422228 ,
GSM1422229 ,
GSM1422230 Series (2)
GSE52482 Transcriptome profiling of plaque macrophages during atherosclerosis regression
GSE58913 Transcriptome profiling of responses of mouse peritoneal macrophages to oxLDL
Relations Alternative to
GPL6096 (official)
Data table header descriptions ID probe set ID
SPOT_ID Ensembl transcript ID
Description
Data table ID SPOT_ID Description ENSMUST00000000001_at
ENSMUST00000000001 cdna:known chromosome:NCBIM37:3:107910198:107949064:-1 gene:ENSMUSG00000000001 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000003_at
ENSMUST00000000003 cdna:known chromosome:NCBIM37:X:75083240:75098962:-1 gene:ENSMUSG00000000003 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000010_at
ENSMUST00000000010 cdna:known chromosome:NCBIM37:11:96132771:96137909:1 gene:ENSMUSG00000020875 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000028_at
ENSMUST00000000028 cdna:known chromosome:NCBIM37:16:18780540:18812065:-1 gene:ENSMUSG00000000028 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000033_at
ENSMUST00000000033 cdna:known chromosome:NCBIM37:7:149836673:149843401:-1 gene:ENSMUSG00000048583 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000049_at
ENSMUST00000000049 cdna:known chromosome:NCBIM37:11:108256607:108275710:1 gene:ENSMUSG00000000049 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000058_at
ENSMUST00000000058 cdna:known chromosome:NCBIM37:6:17231185:17239115:1 gene:ENSMUSG00000000058 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000080_at
ENSMUST00000000080 cdna:known chromosome:NCBIM37:13:5860735:5869639:1 gene:ENSMUSG00000000078 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000087_at
ENSMUST00000000087 cdna:known chromosome:NCBIM37:4:120077912:120202789:1 gene:ENSMUSG00000000085 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000090_at
ENSMUST00000000090 cdna:known chromosome:NCBIM37:9:57369039:57380231:1 gene:ENSMUSG00000000088 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000094_at
ENSMUST00000000094 cdna:known chromosome:NCBIM37:2:156490614:156590099:1 gene:ENSMUSG00000061689 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000095_at
ENSMUST00000000095 cdna:known chromosome:NCBIM37:11:85646053:85655450:1 gene:ENSMUSG00000000093 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000096_at
ENSMUST00000000096 cdna:known chromosome:NCBIM37:11:85703565:85729599:1 gene:ENSMUSG00000000094 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000102_at
ENSMUST00000000102 cdna:known chromosome:NCBIM37:6:120735896:120744000:1 gene:ENSMUSG00000004902 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000109_at
ENSMUST00000000109 cdna:known chromosome:NCBIM37:15:91958619:92172384:1 gene:ENSMUSG00000055022 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000122_at
ENSMUST00000000122 cdna:known chromosome:NCBIM37:11:95430132:95449049:-1 gene:ENSMUSG00000000120 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000127_at
ENSMUST00000000127 cdna:known chromosome:NCBIM37:11:103635464:103679271:1 gene:ENSMUSG00000000125 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000128_at
ENSMUST00000000128 cdna:known chromosome:NCBIM37:11:59120430:59147054:1 gene:ENSMUSG00000000126 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000129_at
ENSMUST00000000129 cdna:known chromosome:NCBIM37:17:64245367:64488843:1 gene:ENSMUSG00000000127 gene_biotype:protein_coding transcript_biotype:protein_coding
ENSMUST00000000137_at
ENSMUST00000000137 cdna:known chromosome:NCBIM37:11:19962307:20012916:-1 gene:ENSMUSG00000020152 gene_biotype:protein_coding transcript_biotype:protein_coding
81690 14553 Kbytes .Supplementary file Size Download File type/resource GPL17946_MoEx10stv1_Mm_ENST.pgf.gz
48.7 Mb
(ftp) (http) PGF
GPL17946_MoEx10stv1_Mm_ENST_desc.txt.gz
1.6 Mb
(ftp) (http) TXT
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