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Platform GPL18122 Query DataSets for GPL18122
Status Public on Feb 20, 2014
Title [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array (custom CDF)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
Description Alternative CDF's were generated by masking probes which showed non-specific hybridization towards mouse in the human arrays and vice versa. Briefly, using raw intensity signals from cel files, individual probes were filtered if they met the following criteria: the net intensity (PM-MM) of each probe pair from the cross-reactive species was less than 10 and greater than 50% of the corresponding signal from human tumor core. Alternatively, to detect cross-reactive human signal on the mouse microarrays, mouse chips were hybridized with pure human cell line RNA and the corresponding same criteria were applied. The remaining probes were grouped into their original probe sets and those that had at least 4 remaining probes were retained in the new chip definition file (cdf). This resulted in alternative cdf’s containing 26,954 probe sets for the HG-U133 plus2 array and 21,675 probe sets for the Mouse430_2 array.
Submission date Dec 30, 2013
Last update date Mar 29, 2019
Contact name Margaret C Cam
Phone 240-760-7179
Organization name NIH
Street address Bldg 37/3041C
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Samples (16) GSM1299363, GSM1299364, GSM1299365, GSM1299366, GSM1299367, GSM1299368 
Series (1)
GSE53717 Identification of Molecular Pathways Facilitating Glioma Cell Invasion In Situ
Alternative to GPL1261 (official)

Data table header descriptions
GB_ACC GenBank accession

Data table
1415670_at BC024686
1415671_at NM_013477
1415672_at NM_020585
1415673_at NM_133900
1415674_a_at NM_021789
1415675_at BC008256
1415676_a_at NM_011186
1415678_at BC008595
1415679_at NM_025498
1415680_at NM_008569
1415681_at NM_053164
1415682_at NM_023045
1415683_at BC016526
1415684_at AV168389
1415685_at NM_133767
1415686_at AV339290
1415687_a_at BM212050
1415688_at NM_025985
1415689_s_at BC007473
1415690_at NM_053161

Total number of rows: 26944

Table truncated, full table size 560 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL18122_Mouse430_2masked.cdf.gz 4.6 Mb (ftp)(http) CDF

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