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Platform GPL18442 Query DataSets for GPL18442
Status Public on Mar 20, 2014
Title Agilent-021323 Zebra Finch AgilentSongbird2 Oligoarray
Technology type in situ oligonucleotide
Distribution commercial
Organism Taeniopygia guttata
Manufacturer Agilent
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Part #: G2514F and AMADID #: 021323
The Agilent songbird array contains over 43K unique transcripts, many of which can be used to distinguish between specific splice variants. The sequences used for generating features (probes) on the array are from sequencing projects performed at the Keck Center of the University of Illinois, at Rockefeller University by Xiao-Chieng Li, and at Duke University. All of these sequences are stored in the songbirdtranscriptome.net website. In addition to these sequences, over 450 features on the array were designed from clones found in genbank.
 
Submission date Mar 19, 2014
Last update date Mar 20, 2014
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (36) GSM1354686, GSM1354687, GSM1354688, GSM1354689, GSM1354690, GSM1354691 
Series (1)
GSE56075 Agilent custom zebra finch microarray

Data table header descriptions
ID Feature Number
SEQUENCE Sequence
ProbeName
CLONE_ID
SPOT_ID
clusterid
subclusterid
estimaid
ncEst
finalRNA
ensid
ensScore
enstype
esnchr
ensname
ensdesc
dukename
dukedescription
chickenname
chickendescription
humanname
humandescription
finalName
finalDesc
finalScore
evidence

Data table
ID SEQUENCE ProbeName CLONE_ID SPOT_ID clusterid subclusterid estimaid ncEst finalRNA ensid ensScore enstype esnchr ensname ensdesc dukename dukedescription chickenname chickendescription humanname humandescription finalName finalDesc finalScore evidence
1 GE_BrightCorner --GE_BrightCorner
2 DarkCorner --DarkCorner
3 DarkCorner --DarkCorner
4 DarkCorner --DarkCorner
5 DarkCorner --DarkCorner
6 DarkCorner --DarkCorner
7 DarkCorner --DarkCorner
8 DarkCorner --DarkCorner
9 DarkCorner --DarkCorner
10 DarkCorner --DarkCorner
11 DarkCorner --DarkCorner
12 AGCTCTTAACTGTACGAGCTCCTGCGGATGAAAGTCTGCTTTTGGGACAGGCCCCGCAGT 0205P0030B17 SB05030B1A09.f1 20722A060BAD472A9A449CF0598A4F8E EA9353354BBF42A6A73BFCFFF795DB64 SB05030B1A09.f1 1 1 null unknown 0061P0018G08 LOR loricrin FOXO3 5 (5)xeno-refseq:FOXO3(x5):1399,FOXO5(x1):1399,LOC100301621(x1):1399,(2):human_blast,finalname
13 CTGTAAGTGACAATAATATTCTCTCTCTCTCTCTCAAGTGGCTCCAAGAATCAGTGTAAC 0202P0024M14 SB02024A2G07.f1 BD6FAF8D48C74C55B2E910732BDF96E8 CAB0739305574278A747394FFD324099 SB02024A2G07.f1 0 0 ENSTGUG00000005056 2690 protein_coding chr19 GBAS Protein NipSnap homolog 2 (NipSnap2)(Glioblastoma-amplified sequence) [Taeniopygia guttata] null unknown 0202P0024M14 GBAS glioblastoma amplified sequence GBAS Protein NipSnap homolog 2 (NipSnap2)(Glioblastoma-amplified sequence) [Taeniopygia guttata] 1 (1):finalname,(1)ensembl:GBAS(chr19):2634
14 AGAGCAACCAAGTTCCCTATTAGAAAAACGATATCCCAATATTAGAGTTATACAATCTGG 0205P0028D09 SB05028B1B05.f1 365416CD5A614043ABD48648E73074EC FBC7579B48E543BBB84296CC25CB9979 SB05028B1B05.f1 0 0 ENSTGUG00000011720 3889 protein_coding chr1A PYROXD1 Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 (EC 1.8.1.-) [Taeniopygia guttata] null unknown 0205P0028D09 PYROXD1 pyridine nucleotide-disulphide oxidoreductase PYROXD1 Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 (EC 1.8.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8WU10] 7 (7)xeno-refseq:PYROXD1(x5):3889,LOC100145712(x1):3889,ZGC:73254(x1):3889,human_blast,finalname,(1)ensembl:PYROXD1(chr1A):3889
15 ACATATGACAGATGTGTGAACATGGCTTCTTCACCAGCGAAGATTGAAGAGATTTCATGG 0202P0019C06 SB02019A2B03.f1 1C2B3E1B0F234BBF9A76DB7EA696B353 F223FA9FF2C549EDA340F7B795768A72 SB02019A2B03.f1 0 0 ENSTGUG00000001417 3131 protein_coding chr13 PTTG1 Securin (Pituitary tumor-transforming gene 1 protein)(hPTTG)(Tumor-transforming protein 1)(Esp1-associated protein) [Taeniopygia guttata] null unknown 0202P0019C06 PTTG1 pituitary tumor-transforming 1 PTTG1 Securin (Pituitary tumor-transforming gene 1 protein)(hPTTG)(Tumor-transforming protein 1)(Esp1-associated protein) [Taeniopygia guttata] 2 (2):human_blast,finalname,(1)ensembl:PTTG1(chr13):3131
16 ATTCAGGAGGGAACTTCAGGAGGGAAGAAAGGGATGGAATACTTAAATGCCACAGTGCAA 0203P0050F15 SB03050B1C08.f1 723F374E61F7447CADFF8CF47613FEA4 7B3E21C16B7F4906875F03F87C534A83 SB03050B1C08.f1 0 1 null unknown 0203P0050F15 TRIP11 Thyroid receptor-interacting protein 11 (TRIP-11)(Golgi-associated microtubule-binding protein 210)(GMAP-210)(Trip230)(Clonal evolution-related gene on chromosome 14) [Source:UniProtKB/Swiss-Prot;Acc:Q15643] 1 (1):finalname
17 CAGGGCCAAATGACAAAATGAAGTGGTGCCTGAGAGTGAATCCAAAGGGATTAGATGATG 0206P0012J11 SB06012B1E06.f1 09286EECE6F6462F974154B683A66902 A651EDE1DC174EAD91A2263E591F20F3 SB06012B1E06.f1 0 0 ENSTGUG00000011840 1668 protein_coding chr7 SPOPL Speckle-type POZ protein-like (HIB homolog 2)(Roadkill homolog 2) [Taeniopygia guttata] null unknown 0206P0012J11 SPOPL speckle-type POZ protein-like SPOP Speckle-type POZ protein (HIB homolog 1)(Roadkill homolog 1) [Source:UniProtKB/Swiss-Prot;Acc:O43791] 8 (8)xeno-refseq:SPOP(x8):1668,SPOPL(x4):1668,GM10696(x1):1668,LOC100135306(x1):1668,MGC154338(x1):1668,MGC81433(x1):1668,RGD1563667(x1):1668,ZGC:153365(x1):1668,CG9924(x1):1668,TDPOZ1(x1):1668,TDPOZ3(x1):1668,ATP4A(x5):1295,LOC733327(x1):1295,(2)ensembl:SPOPL(chr7):1668,ENSTGUG00000014779(chrUn):1295,human_blast,(1):finalname
18 ACCTCGGGACAGTCAATCTCTTTAAAAGACCTTTGCCAAAATCAAAACCAGGTTCTGCAC 0203P0070P07 SB03070B1H04.f1 1B9B7B15A5A442BD8CB9947240719821 FAD6BECE832E4ECFAD3CDB33113EB0F2 SB03070B1H04.f1 0 0 ENSTGUG00000012845 4047 protein_coding chr1 MED17 Mediator of RNA polymerase II transcription subunit 17 (Mediator complex subunit 17)(Cofactor required for Sp1 transcriptional activation subunit 6)(CRSP complex subunit 6)(Transcriptional coactivator CRSP77)(Vitamin D3 receptor-interacting protein comple [Taeniopygia guttata] null unknown 0203P0070P07 MED17 Mediator MED17 Mediator MED17 8 (8)ensembl:MED17(chr1):4047,ENSTGUG00000014124(chrUn):2070,xeno-refseq:MED17(x5):4047,CRSP6(x2):4047,LOC100101325(x1):4047,human_blast,finalname
19 GTGATTCATGTTGGCATTTTATTTATAGGTCTAAAAGCTGTGCAGACAGCATAACTGGAT 0202P0043B09 SB02043B1A05.f1 68B6EA00710C4A2AAB134528986E5B1F A565E1919F6240579BB7B0BA43DE9E8F SB02043B1A05.f1 0 0 null unknown 0202P0043B09 0
20 TGGATGCTTAAAACACAGTTGCTTGGTGAAAGAATTTAAATGGTTGTTCAATGAAGCTCA 0106P0001D01 0106P0001D01 48D6AD60C9604B92B0B1C1813B22894A 10443E1ED92A43A99B892C5105FE710D 0 0 null unknown 0106P0001D01 0

Total number of rows: 44969

Table truncated, full table size 19547 Kbytes.




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