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Status
Public on Nov 24, 2014
Title
Agilent-023740 209_DrerioAgilentCatalogV2_PlusELinneyContent
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Danio rerio Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Redacted content from the Agilent V2 catalog array in order to make room for Elwood's neural and RA content. Custom design for Lindsey.
Submission date
May 23, 2014
Last update date
Nov 24, 2014
Contact name
Nishad Jayasundara
E-mail(s)
jnishad@gmail.com Phone
5107783140
Organization name
Duke University
Department
Nicholas School of the Environment
Lab
Di Giulio Laboratory
Street address
A346, Research Drive, LSRC
City
Durham
State/province
NC
ZIP/Postal code
27708
Country
USA
Samples (109)
GSM1398281 , GSM1398282 , GSM1398283 , GSM1398284 , GSM1398285 , GSM1398286
GSM1398287 ,
GSM1398288 ,
GSM1398289 ,
GSM1398290 ,
GSM1398291 ,
GSM1398292 ,
GSM1398293 ,
GSM1398294 ,
GSM1398295 ,
GSM1398296 ,
GSM1398297 ,
GSM1398298 ,
GSM1398299 ,
GSM1398300 ,
GSM1398301 ,
GSM1398302 ,
GSM1398303 ,
GSM1398304 ,
GSM1398305 ,
GSM1398306 ,
GSM1398307 ,
GSM1398308 ,
GSM1398309 ,
GSM1398310 ,
GSM1398311 ,
GSM1398312 ,
GSM1398313 ,
GSM1398314 ,
GSM1398315 ,
GSM1398316 ,
GSM1398317 ,
GSM1398318 ,
GSM1398319 ,
GSM1398320 ,
GSM1398321 ,
GSM1398322 ,
GSM1398323 ,
GSM1398324 ,
GSM1398325 ,
GSM1398326 ,
GSM1398327 ,
GSM1398328 ,
GSM1398329 ,
GSM1398330 ,
GSM1398331 ,
GSM1398332 ,
GSM1398333 ,
GSM1398334 ,
GSM1398335 ,
GSM1398336 ,
GSM1398337 ,
GSM1398338 ,
GSM1398339 ,
GSM1398340 ,
GSM1398341 ,
GSM1398342 ,
GSM1398343 ,
GSM1398344 ,
GSM1398345 ,
GSM1398346 ,
GSM1398347 ,
GSM1398348 ,
GSM1398349 ,
GSM1398350 ,
GSM1398351 ,
GSM1398352 ,
GSM1398353 ,
GSM1398354 ,
GSM1398355 ,
GSM1398356 ,
GSM1398357 ,
GSM1398358 ,
GSM1398359 ,
GSM1398360 ,
GSM1398361 ,
GSM1398362 ,
GSM1398363 ,
GSM1398364 ,
GSM1398365 ,
GSM1398366 ,
GSM1398367 ,
GSM1398368 ,
GSM1398369 ,
GSM1398370 ,
GSM1398371 ,
GSM1398372 ,
GSM1398373 ,
GSM1398374 ,
GSM1398375 ,
GSM1398376 ,
GSM1398377 ,
GSM1398378 ,
GSM1398379 ,
GSM1398380 ,
GSM1398381 ,
GSM1398382 ,
GSM1398383 ,
GSM1398384 ,
GSM1398385 ,
GSM1398386 ,
GSM1398387 ,
GSM1398388 ,
GSM1398389 Series (1)
GSE57946 Role of AHR in cardiac developmental toxicity of PAHs
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID Spot identifier
Data table ID COL ROW NAME CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE SPOT_ID 1
266
170
GE_BrightCorner
pos
CONTROL
2
266
168
DarkCorner
pos
CONTROL
3
266
166
DarkCorner
pos
CONTROL
4
266
164
DarkCorner
pos
CONTROL
5
266
162
DarkCorner
pos
CONTROL
6
266
160
DarkCorner
pos
CONTROL
7
266
158
DarkCorner
pos
CONTROL
8
266
156
DarkCorner
pos
CONTROL
9
266
154
DarkCorner
pos
CONTROL
10
266
152
DarkCorner
pos
CONTROL
11
266
150
DarkCorner
pos
CONTROL
12
266
148
A_15_P234031
FALSE
ug|EH564897|ug|EH564897|tc|TC348459
unmapped
"FDR202-P00022-DEPE-R_A14 FDR202 Danio rerio cDNA clone FDR202-P00022-BR_A14 3', mRNA sequence [EH564897]"
AACATCTCCACAATCTGATATCCGCATGTATTTCAGTTGAGCCATTAAATAAAGACAACA
13
266
146
A_15_P165641
FALSE
XM_001345074
XM_001345074 ENSDART00000058514
ens|ENSDART00000058514|ens|ENSDART00000058514|ref|XM_001345074
unmapped
"PREDICTED: Danio rerio hypothetical protein LOC100006328 (LOC100006328), mRNA [XM_001345074]"
GGAAAAGCCATGTTCAACTTAGACTCTTTCCCTGCATGGGCCAACCAAACAGTAATATGA
14
266
144
A_15_P104477
FALSE
NM_200117
NM_200117 hist2h2l
ref|NM_200117|ref|NM_200117|gb|BC059463|ug|EH439792|tc|TC352432
unmapped
"Danio rerio histone 2, H2, like (hist2h2l), mRNA [NM_200117]"
GTCAAACTGCTGGAGGAAATCACTGTGGCTTTGGTTTTTATTGATTCTTGTTGACAAAAA
15
266
142
A_15_P112415
FALSE
NM_207061
NM_207061 tollip
ENSDART00000016630
ref|NM_207061|ref|NM_207061|ens|ENSDART00000016630|gb|BC066544|gb|BC046009
unmapped
"Danio rerio toll interacting protein (tollip), mRNA [NM_207061]"
TCCTCCGGGAGCAGTAAACCATATCTGTATTGTAGTGTTCCCACGTCTTAAAGATGTTTG
16
266
140
A_15_P403405
FALSE
LOC565165
ug|XM_701243|ug|XM_701243
unmapped
"PREDICTED: Danio rerio hypothetical LOC565165 (LOC565165), mRNA [XM_701243]"
AAGAACCGTTTCATTAGTACACCTTCGGGGACATGAAAGATGCACAATTTGATAAATATT
17
266
138
A_15_P296321
FALSE
ug|BI865462|ug|BI865462
unmapped
"ft23a09.x1 Zebrafish neuronal Danio rerio cDNA clone IMAGE:5082160 3', mRNA sequence [BI865462]"
CACATTTATATGCGTTATAAGTTCTCTGACTGATGCCATGCAAGTCTTAATTAGGGAAAT
18
266
136
A_15_P191236
FALSE
ENSDART00000074401
ens|ENSDART00000074401|ens|ENSDART00000074401|ug|DT069499|tc|TC336715
unmapped
"AGENCOURT_56110452 NIH_ZGC_10 Danio rerio cDNA clone IMAGE:8000714 5', mRNA sequence [DT069499]"
ACTCAAGGGAATATTGGAATGCAGCCATCAGACACTAAGCAGGTGAAGCTGACAGTTTTT
19
266
134
A_15_P177656
FALSE
gb|BC124199|gb|BC124199|tc|TC342458
unmapped
Danio rerio cDNA clone IMAGE:5913751. [BC124199]
GCCTTTAGGTTTCAAGCTTTATTTGTACGTTCTCTGTTGCATCCCAGTAATTCTGTTTGT
20
266
132
A_15_P139841
FALSE
NM_001020740
NM_001020740 zgc:110167
ref|NM_001020740|ref|NM_001020740|gb|BC095192
unmapped
"Danio rerio zgc:110167 (zgc:110167), mRNA [NM_001020740]"
ACAGTAACTCTGTGTTGCTTGCTCTGTCAGATACCCAATAAACTCAGAAATGGCAAAAAA
45220 11401 Kbytes .Supplementary data files not provided
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