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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 14, 2014 |
| Title |
NimbleGen Human Gene Expression 12x135K Array [100718_HG18_opt_expr] |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
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| Description |
Designname: 100718_HG18_opt_expr
Designid: 535523
Build: HG18
FEAT_TYPE: transcript
Probe Length: 60mer
Target Genes: 45,033
Probes per Target: 3
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| Submission date |
Jul 14, 2014 |
| Last update date |
Dec 25, 2017 |
| Contact name |
GEO admin |
| E-mail(s) |
geo@ncbi.nlm.nih.gov
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| Organization name |
NCBI/NLM/NIH
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| Street address |
9000 Rockville Pike
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| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Samples (172)
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GSM1436151, GSM1436152, GSM1436153, GSM1436154, GSM1436155, GSM1436156
GSM1436157, GSM1436158, GSM1436159, GSM1436160, GSM1436161, GSM1436162, GSM1436163, GSM1436164, GSM1436165, GSM1436166, GSM1436167, GSM1436168, GSM1436169, GSM1436170, GSM1436171, GSM1436172, GSM1436173, GSM1436174, GSM1436175, GSM1436176, GSM1436177, GSM1436178, GSM1436179, GSM1436180, GSM1436181, GSM1436182, GSM1436183, GSM1436184, GSM1436185, GSM1436186, GSM1557945, GSM1557946, GSM1557947, GSM1557948, GSM1557949, GSM1557950, GSM1557951, GSM1557952, GSM1557953, GSM1557954, GSM1557955, GSM1557956, GSM1564188, GSM1564189, GSM1611093, GSM1611094, GSM1611095, GSM1611096, GSM1684628, GSM1684629, GSM1705335, GSM1705336, GSM2095884, GSM2095885, GSM2095886, GSM2095887, GSM2095888, GSM2095889, GSM2434440, GSM2434441, GSM2434442, GSM2434443, GSM2434444, GSM2434445, GSM2486657, GSM2486658, GSM2486659, GSM2486660, GSM2486661, GSM2486662, GSM2486663, GSM2486664, GSM2486665, GSM2486666, GSM2486667, GSM2486668, GSM2520058, GSM2520059, GSM2520060, GSM2520061, GSM2520062, GSM2520063, GSM2545127, GSM2545128, GSM2545129, GSM2545130, GSM2545131, GSM2545132, GSM2700741, GSM2700742, GSM2700743, GSM2700744, GSM2700745, GSM2700746, GSM2700747, GSM2700748, GSM2700749, GSM2700750, GSM2700751, GSM2700752, GSM2700753, GSM2700754, GSM2700755, GSM2700756, GSM2700757, GSM2700758, GSM2700759, GSM2700760, GSM2700761, GSM2700762, GSM2700763, GSM2700764, GSM2700765, GSM2700766, GSM2700767, GSM2700768, GSM2700787, GSM2700788, GSM2700789, GSM2700790, GSM2700791, GSM2700792, GSM2700793, GSM2700794, GSM2700795, GSM2700796, GSM2700797, GSM2700798, GSM2700799, GSM2700800, GSM2700801, GSM2700802, GSM2700803, GSM2700804, GSM2700805, GSM2700806, GSM2700807, GSM2700808, GSM2700809, GSM2700810, GSM2700811, GSM2700812, GSM2858315, GSM2858316, GSM2858317, GSM2858318, GSM2858319, GSM2858320, GSM2858321, GSM2858322, GSM2858323, GSM2858324, GSM2858325, GSM2858326, GSM4442367, GSM4442368, GSM4442369, GSM4442370, GSM4442371, GSM4442372, GSM4442373, GSM4442374, GSM4442375, GSM4442376, GSM4442377, GSM4442378
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| Series (16)
|
| GSE59391 |
Deciphering the gene expression response of human immune cells to stimulation with RSV in the context of antibodies |
| GSE63812 |
KDM4A depletion by siRNA in HEK293T cells |
| GSE64093 |
Expression analysis of Human esophagus cancer cell line TE-1 transfected with PCDNA3.1 and PCDNA3.1-Pax2 |
| GSE65915 |
Expression analysis of gene expression changes in Homo sapiens SGC-7901 cells after knock down of MTA2 or overexpression of SNHG5 |
| GSE68863 |
Expression analysis of sk-hep-1(sk) cell and sk-hep-1-sh EZH2(sks) cell |
| GSE69650 |
Expression analysis of Human pancreatic cancer cell line Panc1 pretreated with DMSO and Clofibrate. |
| GSE79486 |
KRAS mutation (G12V) expression by pBABE-Puro vector in NCI-H1703 cells |
| GSE92678 |
Expression analysis of Hsa-miR-145-5p overexpressed laryngeal squamous carcinoma cell line TU177 |
| GSE94865 |
Gene expression changes following knockdown or overexpression of HHEX/PRH |
| GSE95637 |
Expression data from NB4 control shRNA cells and NB4 TRIB3 shRNA cells |
| GSE96854 |
Transcriptomics analysis of Hirschsprung’s disease |
| GSE101212 |
Dynamic gene expression response to altered gravity in human myelomonocytic U937 cells [parabolic] |
| GSE101299 |
Dynamic gene expression response to altered gravity in human myelomonocytic U937 cells [sounding rocket] |
| GSE101309 |
Dynamic gene expression response to altered gravity in human myelomonocytic U937 cells |
| GSE106959 |
Time-course hypoxia incubation (1% O2) of D283-Med medulloblastoma cells |
| GSE147686 |
Gene expression profile of BJAB and CEM cell lines after WNT7A ectopic expression using a lentiviral vector (pLVX) |
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| Data table header descriptions |
| ID |
SEQ_ID from .ndf file |
| GB_ACC |
GenBank Accession number |
| CHROMOSOME |
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| START |
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| STOP |
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| DESCRIPTION |
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| GENE_ID |
Gene ID |
| SPOT_ID |
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| Data table |
| ID |
GB_ACC |
CHROMOSOME |
START |
STOP |
DESCRIPTION |
GENE_ID |
SPOT_ID |
| BC035719 |
BC035719 |
chr19 |
63550035 |
63559403 |
ExemplarFor 'BC035719'; gene_id '1'; transcript_id 'BC035719'; gene_name 'A1BG'; alt 'A1B#ABG#DKFZp686F0970#GAB#HYST2477'; alpha-1-B glycoprotein |
1 |
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| NM_130786 |
NM_130786 |
chr19 |
63548355 |
63556669 |
ExemplarFor 'NM_130786'; gene_id '1'; transcript_id 'NM_130786'; gene_name 'A1BG'; alt 'A1B#ABG#DKFZp686F0970#GAB#HYST2477'; alpha-1-B glycoprotein |
1 |
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| NM_000014 |
NM_000014 |
chr12 |
9111570 |
9159825 |
ExemplarFor 'NM_000014'; gene_id '2'; transcript_id 'NM_000014'; gene_name 'A2M'; alt 'CPAMD5#DKFZp779B086#FWP007#S863-7#alpha 2M'; alpha-2-macroglobulin |
2 |
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| NM_000662 |
NM_000662 |
chr8 |
18111894 |
18125100 |
ExemplarFor 'NM_000662'; gene_id '9'; transcript_id 'NM_000662'; gene_name 'NAT1'; alt 'AAC1'; N-acetyltransferase 1 (arylamine N-acetyltransferase) |
9 |
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| BC015878 |
BC015878 |
chr8 |
18293076 |
18302762 |
ExemplarFor 'BC015878'; gene_id '10'; transcript_id 'BC015878'; gene_name 'NAT2'; alt 'AAC2'; N-acetyltransferase 2 (arylamine N-acetyltransferase) |
10 |
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| NM_000015 |
NM_000015 |
chr8 |
18293034 |
18302962 |
ExemplarFor 'NM_000015'; gene_id '10'; transcript_id 'NM_000015'; gene_name 'NAT2'; alt 'AAC2'; N-acetyltransferase 2 (arylamine N-acetyltransferase) |
10 |
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| NM_001085 |
NM_001085 |
chr14 |
94148466 |
94160143 |
ExemplarFor 'NM_001085'; gene_id '12'; transcript_id 'NM_001085'; gene_name 'SERPINA3'; alt 'AACT#ACT#GIG24#GIG25#MGC88254'; serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 |
12 |
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| NM_001086 |
NM_001086 |
chr3 |
153014550 |
153028966 |
ExemplarFor 'NM_001086'; gene_id '13'; transcript_id 'NM_001086'; gene_name 'AADAC'; alt 'DAC'; arylacetamide deacetylase (esterase) |
13 |
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| AB209790 |
AB209790 |
chr2 |
218837096 |
218843055 |
ExemplarFor 'AB209790'; gene_id '14'; transcript_id 'AB209790'; gene_name 'AAMP'; alt '-'; angio-associated, migratory cell protein |
14 |
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| AK131047 |
AK131047 |
chr2 |
218837094 |
218843110 |
ExemplarFor 'AK131047'; gene_id '14'; transcript_id 'AK131047'; gene_name 'AAMP'; alt '-'; angio-associated, migratory cell protein |
14 |
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| BC014122 |
BC014122 |
chr2 |
218837096 |
218843075 |
ExemplarFor 'BC014122'; gene_id '14'; transcript_id 'BC014122'; gene_name 'AAMP'; alt '-'; angio-associated, migratory cell protein |
14 |
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| BC039866 |
BC039866 |
chr2 |
218837096 |
218843104 |
ExemplarFor 'BC039866'; gene_id '14'; transcript_id 'BC039866'; gene_name 'AAMP'; alt '-'; angio-associated, migratory cell protein |
14 |
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| NM_001087 |
NM_001087 |
chr2 |
218837096 |
218843137 |
ExemplarFor 'NM_001087'; gene_id '14'; transcript_id 'NM_001087'; gene_name 'AAMP'; alt '-'; angio-associated, migratory cell protein |
14 |
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| BC069434 |
BC069434 |
chr17 |
71975281 |
71977751 |
ExemplarFor 'BC069434'; gene_id '15'; transcript_id 'BC069434'; gene_name 'AANAT'; alt 'AA-NAT#SNAT'; arylalkylamine N-acetyltransferase |
15 |
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| BC092430 |
BC092430 |
chr17 |
71961027 |
71977793 |
ExemplarFor 'BC092430'; gene_id '15'; transcript_id 'BC092430'; gene_name 'AANAT'; alt 'AA-NAT#SNAT'; arylalkylamine N-acetyltransferase |
15 |
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| NM_001088 |
NM_001088 |
chr17 |
71975245 |
71977794 |
ExemplarFor 'NM_001088'; gene_id '15'; transcript_id 'NM_001088'; gene_name 'AANAT'; alt 'AA-NAT#SNAT'; arylalkylamine N-acetyltransferase |
15 |
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| NM_001605 |
NM_001605 |
chr16 |
68843797 |
68880913 |
ExemplarFor 'NM_001605'; gene_id '16'; transcript_id 'NM_001605'; gene_name 'AARS'; alt '-'; alanyl-tRNA synthetase |
16 |
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| BC015628 |
BC015628 |
chr16 |
8676023 |
8782876 |
ExemplarFor 'BC015628'; gene_id '18'; transcript_id 'BC015628'; gene_name 'ABAT'; alt 'GABA-AT#GABAT#NPD009'; 4-aminobutyrate aminotransferase |
18 |
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| NM_000663 |
NM_000663 |
chr16 |
8727687 |
8785933 |
ExemplarFor 'NM_000663'; gene_id '18'; transcript_id 'NM_000663'; gene_name 'ABAT'; alt 'GABA-AT#GABAT#NPD009'; 4-aminobutyrate aminotransferase |
18 |
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| AF165281 |
AF165281 |
chr9 |
106583661 |
106691297 |
ExemplarFor 'AF165281'; gene_id '19'; transcript_id 'AF165281'; gene_name 'ABCA1'; alt 'ABC-1#ABC1#CERP#FLJ14958#HDLDT1#TGD'; ATP-binding cassette, sub-family A (ABC1), member 1 |
19 |
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Total number of rows: 45034
Table truncated, full table size 8854 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL18943_100718_HG18_opt_expr.ndf.gz |
8.5 Mb |
(ftp)(http) |
NDF |
| GPL18943_100718_HG18_opt_expr.ngd.gz |
2.7 Mb |
(ftp)(http) |
NGD |
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