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Status
Public on Sep 10, 2014
Title
Affymetrix GeneChip Human Genome U133 Array Set HG-U133 Plus2 based on a custom CDF (GeneAnnot version 2.2.0)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
Affymetrix HG-U133 Plus2 microarrays analysed with custom chip definition files based on the GeneAnnot database. For further information, see Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA, Bicciato S.: Novel definition files for human GeneChips based on GeneAnnot. BMC Bioinformatics. 2007 Nov 15;8(1):446 We used Version 2.2.0 of custom CDF files and R packages based on GeneAnnot version 2.0 and GeneCards version 3.04, available online at http://www.xlab.unimo.it/GA_CDF/
Submission date
Sep 09, 2014
Last update date
Sep 10, 2014
Contact name
Silvio Bicciato
E-mail(s)
silvio.bicciato@unipd.it Phone
+39-049-827-6108
Organization name
University of Padova
Department
Molecular Medicine
Street address
via U. Bassi 59/b
City
Padova
ZIP/Postal code
35131
Country
Italy
Samples (6)
GSM1501178 , GSM1501179 , GSM1501180 , GSM1501181 , GSM1501182 , GSM1501183 Series (2)
GSE61266 Genome-wide Definition of Promoter and Enhancer Usage During Neural Induction of Human Embryonic Stem Cells [gene expression profile]
GSE61267 Genome-wide Definition of Promoter and Enhancer Usage During Neural Induction of Human Embryonic Stem Cells
Data table header descriptions ID GeneCards_ID GeneCards IDs (www.genecards.org)
ORF Gene symbol
Entrez_ID Entrez gene IDs
Gene_Description Gene description
SPOT_ID
Data table ID GeneCards_ID ORF Entrez_ID Gene_Description SPOT_ID GC00M8Q0018_at
GC00M8Q0018
ENSG00000215632 GC00M8V0035_at
GC00M8V0035
ENSG00000215719 GC00M9T0048_at
GC00M9T0048
LOC389834 389834
ankyrin repeat domain 57 pseudogene
GC00P8V0064_at
GC00P8V0064
ENSG00000212857 GC00P9C0024_at
GC00P9C0024
GC00P9C0024
GC00U902522_at
GC00U902522
NPSA 266811
novel prostate-specific antigen
GC00U902726_at
GC00U902726
D21S2088E 266917
D21S2088E
GC00U902727_at
GC00U902727
D21S2090E 266918
D21S2090E
GC00U913730_at
GC00U913730
LOC389831 389831
hypothetical gene supported by AL713796
GC00U921857_at
GC00U921857
LOC652147 652147
similar to U5 snRNP-specific protein, 200 kDa
GC00U922231_at
GC00U922231
GC00U922231
GC00U922298_at
GC00U922298
LOC100093698 100093698
unknown transcript
GC00U922307_at
GC00U922307
LOC100125871 100125871
hypothetical protein LOC100125871
GC00U922831_at
GC00U922831
LOC100216546 100216546
hypothetical LOC100216546
GC00U990668_at
GC00U990668
HR44 27251
Hr44 antigen
GC00U990809_at
GC00U990809
KIAA0485 57235
hypothetical LOC57235
GC00U990813_at
GC00U990813
KIAA0509 57242
hypothetical LOC57242
GC00U991001_at
GC00U991001
MGC12488 84786
hypothetical protein MGC12488
GC00U991290_at
GC00U991290
GC00U991290
GC01M000227_at
GC01M000227
ENSG00000228463
19204 1407 Kbytes .Supplementary file Size Download File type/resource GPL19171_gahgu133plus2_2.2.0.cdf.gz
8.9 Mb
(ftp) (http) CDF
GPL19171_gahgu133plus2_2.2.0.cdf.txt.gz
3.3 Mb
(ftp) (http) TXT
