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Status
Public on Jan 01, 2016
Title
Agilent-049615 Enchytraeus crypticus V2.0 44k
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Enchytraeus crypticus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
This array still contains the original Enchytraeus crypticus transcriptome assembly but duplicates and non working singleton probes have been removed
Submission date
Jun 10, 2015
Last update date
May 20, 2016
Contact name
Susana Isabel Lopes Gomes
E-mail(s)
susana.gomes@ua.pt Organization name
CESAM & University of Aveiro
Department
Biology
Street address
Campus Universitário de Santiago, Departement of Biology, University of Aveiro
City
Aveiro
ZIP/Postal code
3810-193
Country
Portugal
Samples (285)
GSM1708112 , GSM1708113 , GSM1708114 , GSM1708115 , GSM1708116 , GSM1708117
GSM1708118 ,
GSM1708119 ,
GSM1708120 ,
GSM1708121 ,
GSM1708122 ,
GSM1708123 ,
GSM1708124 ,
GSM1708125 ,
GSM1708126 ,
GSM1708127 ,
GSM1708128 ,
GSM1708129 ,
GSM1708130 ,
GSM1708131 ,
GSM1708132 ,
GSM1708133 ,
GSM1708134 ,
GSM1708135 ,
GSM1708136 ,
GSM1708137 ,
GSM1708138 ,
GSM1708139 ,
GSM1708140 ,
GSM1708141 ,
GSM1708142 ,
GSM1708143 ,
GSM1708144 ,
GSM1708145 ,
GSM1708146 ,
GSM1708147 ,
GSM1708148 ,
GSM1708149 ,
GSM1708150 ,
GSM1708151 ,
GSM1708152 ,
GSM1708153 ,
GSM1708154 ,
GSM1708155 ,
GSM1708156 ,
GSM1708157 ,
GSM1708158 ,
GSM1708159 ,
GSM1708160 ,
GSM1708161 ,
GSM1708162 ,
GSM1708163 ,
GSM1708164 ,
GSM1708165 ,
GSM1708166 ,
GSM1708167 ,
GSM1708168 ,
GSM1708169 ,
GSM1708170 ,
GSM1708171 ,
GSM1708840 ,
GSM1708841 ,
GSM1708842 ,
GSM1708843 ,
GSM1708844 ,
GSM1708845 ,
GSM1708846 ,
GSM1708847 ,
GSM1708848 ,
GSM1708849 ,
GSM1708850 ,
GSM1708851 ,
GSM1708852 ,
GSM1708853 ,
GSM1708854 ,
GSM1708855 ,
GSM1708856 ,
GSM1708857 ,
GSM1708858 ,
GSM1708859 ,
GSM1708860 ,
GSM1708861 ,
GSM1708862 ,
GSM1708863 ,
GSM1708864 ,
GSM1708865 ,
GSM1708866 ,
GSM1708867 ,
GSM1708868 ,
GSM1708869 ,
GSM1708870 ,
GSM1708871 ,
GSM1708872 ,
GSM1708873 ,
GSM1708874 ,
GSM1708875 ,
GSM1708876 ,
GSM1708877 ,
GSM1708878 ,
GSM1708879 ,
GSM1708880 ,
GSM1708881 ,
GSM1708882 ,
GSM1708883 ,
GSM1708884 ,
GSM1708885 ,
GSM1708886 ,
GSM1708887 ,
GSM1708888 ,
GSM1708889 ,
GSM1708890 ,
GSM1708891 ,
GSM1708892 ,
GSM1708893 ,
GSM1708894 ,
GSM1708895 ,
GSM1708896 ,
GSM1708897 ,
GSM1708898 ,
GSM1708899 ,
GSM1708900 ,
GSM1708901 ,
GSM1708902 ,
GSM1708903 ,
GSM1708904 ,
GSM1708905 ,
GSM1708906 ,
GSM1708907 ,
GSM1708908 ,
GSM1708909 ,
GSM1708910 ,
GSM1708911 ,
GSM1708912 ,
GSM1708913 ,
GSM1708914 ,
GSM1708915 ,
GSM1708916 ,
GSM1708917 ,
GSM1708918 ,
GSM1708919 ,
GSM1708920 ,
GSM1708921 ,
GSM1708922 ,
GSM1708923 ,
GSM1708924 ,
GSM1708925 ,
GSM1708926 ,
GSM1708927 ,
GSM1708928 ,
GSM1708929 ,
GSM1708930 ,
GSM1708931 ,
GSM1708932 ,
GSM2171361 ,
GSM2171362 ,
GSM2171363 ,
GSM2171364 ,
GSM2171365 ,
GSM2171366 ,
GSM2171367 ,
GSM2171368 ,
GSM2171369 ,
GSM2171370 ,
GSM2171371 ,
GSM2171372 ,
GSM2171373 ,
GSM2171374 ,
GSM2171375 ,
GSM2171376 ,
GSM2171377 ,
GSM2171378 ,
GSM2171379 ,
GSM2171380 ,
GSM2171381 ,
GSM2171382 ,
GSM2171383 ,
GSM2171384 ,
GSM2171385 ,
GSM2171386 ,
GSM2171387 ,
GSM2171388 ,
GSM2171389 ,
GSM2171390 ,
GSM2171391 ,
GSM2171392 ,
GSM2171393 ,
GSM2171394 ,
GSM2171395 ,
GSM2171396 ,
GSM2171397 ,
GSM2171398 ,
GSM2171399 ,
GSM2171400 ,
GSM2171401 ,
GSM2171402 ,
GSM2171403 ,
GSM2171404 ,
GSM2171405 ,
GSM2171406 ,
GSM2171407 ,
GSM2171408 ,
GSM2171437 ,
GSM2171438 ,
GSM2171439 ,
GSM2171440 ,
GSM2171441 ,
GSM2171442 ,
GSM2171443 ,
GSM2171444 ,
GSM2171445 ,
GSM2171446 ,
GSM2171447 ,
GSM2171448 ,
GSM2171449 ,
GSM2171450 ,
GSM2171451 ,
GSM2171452 ,
GSM2171453 ,
GSM2171454 ,
GSM2171455 ,
GSM2171456 ,
GSM2171457 ,
GSM2171458 ,
GSM2171459 ,
GSM2171460 ,
GSM2171461 ,
GSM2171462 ,
GSM2171463 ,
GSM2890589 ,
GSM2890590 ,
GSM2890591 ,
GSM2890592 ,
GSM2890593 ,
GSM2890594 ,
GSM2890595 ,
GSM2890596 ,
GSM2890597 ,
GSM5356435 ,
GSM5356436 ,
GSM5356437 ,
GSM5356438 ,
GSM5356439 ,
GSM5356440 ,
GSM5356441 ,
GSM5356442 ,
GSM5356443 ,
GSM5356444 ,
GSM5356445 ,
GSM5356446 ,
GSM5356447 ,
GSM5356448 ,
GSM5356449 ,
GSM5356450 ,
GSM5356451 ,
GSM5356452 ,
GSM5356453 ,
GSM5356454 ,
GSM5356455 ,
GSM5356456 ,
GSM5356457 ,
GSM5356458 ,
GSM5356459 ,
GSM5356460 ,
GSM5356461 ,
GSM5356462 ,
GSM5356463 ,
GSM5356464 ,
GSM5356465 ,
GSM5356466 ,
GSM5356467 ,
GSM5356468 ,
GSM5356469 ,
GSM5356470 ,
GSM5356471 ,
GSM5356472 ,
GSM5356473 ,
GSM5356474 ,
GSM5356475 ,
GSM5356476 ,
GSM5356477 ,
GSM5356478 ,
GSM5356479 ,
GSM5356480 ,
GSM5356481 ,
GSM5356482 Series (8)
GSE69746 High-throughput transcriptomics reveals uniquely affected pathways: AgNPs, PVP-coated AgNPs and Ag NM300K case studies
GSE69792 Exposure to different copper forms – nanoparticles, nanowires, salt and field aged: gene expression profiling in Enchytraeus crypticus
GSE69793 Exposure to different nickel nanoparticles and nickel salt: gene expression profile in Enchytraeus crypticus
GSE69794 Exposure to UV radiation: gene expression profile in Enchytraeus crypticus
GSE81694 TiO2 nanoparticles' library toxicity (UV and non-UV exposure) – High-throughput in vivo transcriptomics reveals mechanisms
GSE81699 Mechanisms of (photo)toxicity of TiO2 nanomaterials (NM103, NM104, NM105): using high-throughput gene expression in Enchytraeus crypticus
GSE108133 High-throughput gene expression in soil invertebrate embryos – mechanisms of Cd toxicity in Enchytraeus crypticus
GSE176125 High-throughput transcriptomics reveals mechanisms of nanopesticides – nanoformulation vs conventional pesticides and active ingredient – a case study with Enchytraeus crypticus
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
ME CONTROL_TYPE Control type
ACCESSION_STRING Accession String
DESCRIPTION Description
SEQUENCE Sequence
TSA Accession GI GI number
SPOT_ID Spot identifier
Data table ID COL ROW ME CONTROL_TYPE ACCESSION_STRING DESCRIPTION SEQUENCE TSA Accession GI SPOT_ID 1
266
170
GE_BrightCorner
pos
CONTROL
2
266
168
DarkCorner
pos
CONTROL
3
266
166
DarkCorner
pos
CONTROL
4
266
164
DarkCorner
pos
CONTROL
5
266
162
DarkCorner
pos
CONTROL
6
266
160
DarkCorner
pos
CONTROL
7
266
158
DarkCorner
pos
CONTROL
8
266
156
DarkCorner
pos
CONTROL
9
266
154
DarkCorner
pos
CONTROL
10
266
152
DarkCorner
pos
CONTROL
11
266
150
DarkCorner
pos
CONTROL
12
266
148
CUST_4390_PI427420766_b
FALSE
contig24985
GCGGTTTATTCAAGCGAAGCAAACTTTACGGTGGAGTTATTCTATTGGAAATAGAAAAAA
GALF01022598.1
571002074 13
266
146
CUST_6526_PI427420766_b
FALSE
contig23304
ATTCAAACGTTCCCATCTGCCACTGTAATTGCTAATTGTATCTGACTAAAAGCTTTCATA
GALF01020918.1
571003754 14
266
144
CUST_28263_PI427420766_b
FALSE
GYUW2K401CXR5S
"hypothetical_protein_CAPTEDRAFT_58944,_partial"
ACTGTTTTTGTCTAGTTATCCAGATGACCGCCTTGTTGCTAGTATAGATTCAACAGTTAT
"hypothetical_protein_CAPTEDRAFT_58944,_partial"
15
266
142
CUST_55081_PI427420766_b
FALSE
GYUW2K402IP3TN
family_25_glycosyl_transferase
TCATCAAAGCGTCTGTCAGTTCATCAAGACGTCTGTCAGTTCATCAAAGCGTCTATCAGT
family_25_glycosyl_transferase
16
266
140
CUST_21334_PI427420766_b
FALSE
contig10031
centromere_protein_l
GTGATGAGATTAACTCTGATAATAACCTACAGTAGGGTGCAATCCATTCTGGCATAAATG
GALF01007656.1
571017016 17
266
138
CUST_11122_PI427420766_b
FALSE
contig19226
hypothetical_protein_CGI_10023277
CTTGAAAATGATTCTTTTAAACATTTCAGCGGTTATGCTAGATTCGATCTGCTAGTAGGT
GALF01016844.1
571007828 18
266
136
CUST_23702_PI427420766_b
FALSE
contig02974
cre-unc-89_protein
TTTTTATCATATCGATGACAGAAGTGGGAACGTTCTCGATGCGTCCAGCTGGTACGTGTT
GALF01001816.1
571022856 19
266
134
CUST_50024_PI427420766_b
FALSE
GYUW2K401AYIAD
glutathione_synthetase
CAGTAACTTATTTCCGTGCAGGCTATGGCCCTGAAGATTACCCTACAGAAAAAGAATGGG
glutathione_synthetase
20
266
132
CUST_35702_PI427420766_b
FALSE
GYUW2K402I44SI
CATTGACCTGCCAGTAGGCAGTGAACTAAGAGAGAGAAAGAGATTAATGATTTAAAGATA
NO INFORMATION
45220 7100 Kbytes .Supplementary data files not provided
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