NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL20878 Query DataSets for GPL20878
Status Public on Dec 22, 2016
Title Agilent-073748 PPCD1 CNV 17.3-34.0 (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site (http://www.agilent.com/).
 
Description Array design is based on genome build hg19/GRCh37.
G4126A
Arrays of this design have barcodes that begin with 16073748 or 2573748.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Contributor(s) Le DJ, Frausto RF, Chung D, Aldave AJ
Citation(s) 27355326
Submission date Sep 01, 2015
Last update date Dec 22, 2016
Contact name Anthony J. Aldave
E-mail(s) Aldave@jsei.ucla.edu
Organization name Stein Eye Institute, UCLA
Department Ophthalmology
Lab Cornea Genetics Laboratory
Street address 200 Stein Plaza DSERC 3-143
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Relations
Alternative to GPL20879

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC RefSeq accession
ENSEMBL Ensembl identifier
GENE_SYMBOL Gene symbol
GENE_NAME Gene name
ACCESSION_STRING Accession string
CHROMOSOMAL_LOCATION Chromosomal location
RANGE_GB RefSeq accession.version of chromosome (hg19/GRCh37)
RANGE_START Start coordinate of oligonucleotide relative to RANGE_GB
RANGE_END End coordinate of oligonucleotide relative to RANGE_GB
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC ENSEMBL GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION RANGE_GB RANGE_START RANGE_END DESCRIPTION
1 192 328 HsCGHBrightCorner pos
2 192 326 DarkCorner pos
3 192 324 DarkCorner pos
4 192 322 A_16_P41281653 FALSE NM_001011546 entg|DSTN entg|destrin (actin depolymerizing factor) ref|NM_001011546|ref|NM_006870 chr20:17567187-17567246 NC_000020.10 17567187 17567246 entg|destrin (actin depolymerizing factor)
5 192 320 A_16_P03500966 FALSE ENST00000441568 ens|ENST00000441568 chr20:22659960-22660016 NC_000020.10 22659960 22660016
6 192 318 A_18_P13769359 FALSE chr20:23022283-23022327 NC_000020.10 23022283 23022327
7 192 316 A_18_P22362247 FALSE NM_001163022 entg|PLK1S1 entg|polo-like kinase 1 substrate 1 ref|NM_001163022|ref|NM_001163023|ref|NM_001276389|ref|NM_018474 chr20:21225884-21225934 NC_000020.10 21225884 21225934 entg|polo-like kinase 1 substrate 1
8 192 314 A_16_P03505992 FALSE NM_001008409 entg|TTLL9 entg|tubulin tyrosine ligase-like family, member 9 ref|NM_001008409 chr20:30501941-30502000 NC_000020.10 30501941 30502000 entg|tubulin tyrosine ligase-like family, member 9
9 192 312 A_16_P03500444 FALSE chr20:22355626-22355685 NC_000020.10 22355626 22355685
10 192 310 A_16_P34668206 FALSE NM_014426 entg|SNX5 ref|NM_014426|ref|NM_001282454|ref|NM_152227 chr20:17923880-17923939 NC_000020.10 17923880 17923939
11 192 308 A_18_P13764246 FALSE chr20:21800944-21801003 NC_000020.10 21800944 21801003
12 192 306 A_18_P22366390 FALSE chr20:22746032-22746085 NC_000020.10 22746032 22746085
13 192 304 A_16_P58187156 FALSE chr20:19115509-19115568 NC_000020.10 19115509 19115568
14 192 302 A_16_P58204490 FALSE ENST00000489384 ens|ENST00000489384 chr20:32671650-32671705 NC_000020.10 32671650 32671705
15 192 300 A_16_P21098135 FALSE NM_012255 entg|XRN2 entg|5'-3' exoribonuclease 2 ref|NM_012255 chr20:21311320-21311379 NC_000020.10 21311320 21311379 entg|5'-3' exoribonuclease 2
16 192 298 A_16_P03504483 FALSE NM_015600 entg|ABHD12 entg|abhydrolase domain containing 12 ref|NM_015600|ref|NM_001042472 chr20:25282885-25282940 NC_000020.10 25282885 25282940 entg|abhydrolase domain containing 12
17 192 296 A_16_P58197710 FALSE chr20:25112925-25112984 NC_000020.10 25112925 25112984
18 192 294 A_16_P34677418 FALSE NM_024893 entg|SYNDIG1 entg|synapse differentiation inducing 1 ref|NM_024893 chr20:24646459-24646518 NC_000020.10 24646459 24646518 entg|synapse differentiation inducing 1
19 192 292 A_16_P58197048 FALSE chr20:24768301-24768356 NC_000020.10 24768301 24768356
20 192 290 A_16_P21106630 FALSE chr20:24861020-24861073 NC_000020.10 24861020 24861073

Total number of rows: 62976

Table truncated, full table size 9818 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap