NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL20879 Query DataSets for GPL20879
Status Public on Jun 30, 2016
Title Agilent-073748 PPCD1 CNV 17.3-34.0 (Probe Name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site (http://www.agilent.com/).
 
Description Array design is based on genome build hg19/GRCh37.

G4126A
 
Submission date Sep 01, 2015
Last update date Apr 27, 2016
Contact name Anthony J. Aldave
E-mail(s) Aldave@jsei.ucla.edu
Organization name Stein Eye Institute, UCLA
Department Ophthalmology
Lab Cornea Genetics Laboratory
Street address 200 Stein Plaza DSERC 3-143
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Samples (8) GSM1866510, GSM1866511, GSM1866512, GSM1866513, GSM1866514, GSM1866515 
Series (1)
GSE72617 Identification of Potentially Pathogenic Variants in the Posterior Polymorphous Corneal Dystrophy 1 Locus
Relations
Alternative to GPL20878

Data table header descriptions
ID
CONTROL_TYPE Control type
GB_ACC RefSeq accession
ENSEMBL Ensembl identifier
GENE_SYMBOL Gene symbol
GENE_NAME Gene name
ACCESSION_STRING Accession string
CHROMOSOMAL_LOCATION Chromosomal location
RANGE_GB RefSeq accession.version of chromosome (hg19/GRCh37)
RANGE_START Start coordinate of oligonucleotide relative to RANGE_GB
RANGE_END End coordinate of oligonucleotide relative to RANGE_GB
DESCRIPTION Description
SPOT_ID Spot identifier

Data table
ID CONTROL_TYPE GB_ACC ENSEMBL GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION RANGE_GB RANGE_START RANGE_END DESCRIPTION SPOT_ID
A_14_P100015 FALSE NM_014012 entg|REM1 entg|RAS (RAD and GEM)-like GTP-binding 1 ref|NM_014012 chr20:30072443-30072500 NC_000020.10 30072443 30072500 entg|RAS (RAD and GEM)-like GTP-binding 1 A_14_P100015
A_14_P100018 FALSE NM_003908 entg|EIF2S2 entg|eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa ref|NM_003908 chr20:32695583-32695642 NC_000020.10 32695583 32695642 entg|eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa A_14_P100018
A_14_P100316 FALSE NM_001184977 entg|UQCC entg|ubiquinol-cytochrome c reductase complex chaperone ref|NM_001184977|ref|NM_018244|ref|NM_199487 chr20:33997531-33997590 NC_000020.10 33997531 33997590 entg|ubiquinol-cytochrome c reductase complex chaperone A_14_P100316
A_14_P100331 FALSE NM_001100875 entg|MARCH10 entg|membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase ref|NM_001100875|ref|NM_152598 chr17:60789441-60789500 NC_000017.10 60789441 60789500 entg|membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase A_14_P100331
A_14_P100351 FALSE NM_001719 entg|BMP7 entg|bone morphogenetic protein 7 ref|NM_001719 chr20:55825852-55825911 NC_000020.10 55825852 55825911 entg|bone morphogenetic protein 7 A_14_P100351
A_14_P100465 FALSE NM_001077397 entg|IRF2BP2 entg|interferon regulatory factor 2 binding protein 2 ref|NM_001077397|ref|NM_182972 chr1:234742617-234742676 NC_000001.10 234742617 234742676 entg|interferon regulatory factor 2 binding protein 2 A_14_P100465
A_14_P100543 FALSE NM_015254 entg|KIF13B entg|kinesin family member 13B ref|NM_015254 chr8:29091592-29091651 NC_000008.10 29091592 29091651 entg|kinesin family member 13B A_14_P100543
A_14_P100728 FALSE NM_015655 entg|ZNF337 entg|zinc finger protein 337 ref|NM_015655 chr20:25663616-25663675 NC_000020.10 25663616 25663675 entg|zinc finger protein 337 A_14_P100728
A_14_P100809 FALSE NM_000361 entg|THBD ref|NM_000361 chr20:23027580-23027639 NC_000020.10 23027580 23027639 A_14_P100809
A_14_P100894 FALSE NM_003842 entg|TNFRSF10B entg|tumor necrosis factor receptor superfamily, member 10b ref|NM_003842|ref|NM_147187|ref|NR_027140 chr8:22898467-22898526 NC_000008.10 22898467 22898526 entg|tumor necrosis factor receptor superfamily, member 10b A_14_P100894
A_14_P101141 FALSE NM_006690 entg|MMP24 entg|matrix metallopeptidase 24 (membrane-inserted) ref|NM_006690 chr20:33834617-33834672 NC_000020.10 33834617 33834672 entg|matrix metallopeptidase 24 (membrane-inserted) A_14_P101141
A_14_P101149 FALSE NM_080675 entg|SUN5 entg|Sad1 and UNC84 domain containing 5 ref|NM_080675 chr20:31585444-31585500 NC_000020.10 31585444 31585500 entg|Sad1 and UNC84 domain containing 5 A_14_P101149
A_14_P101160 FALSE NR_034158 entg|NUP210P1 entg|nucleoporin 210kDa pseudogene 1 ref|NR_034158 chr3:126390655-126390714 NC_000003.11 126390655 126390714 entg|nucleoporin 210kDa pseudogene 1 A_14_P101160
A_14_P101263 FALSE chrX:134590529-134590588 NC_000023.10 134590529 134590588 A_14_P101263
A_14_P101299 FALSE chr20:33422878-33422937 NC_000020.10 33422878 33422937 A_14_P101299
A_14_P101526 FALSE NM_001007792 entg|NTRK1 entg|neurotrophic tyrosine kinase, receptor, type 1 ref|NM_001007792|ref|NM_001012331|ref|NM_002529 chr1:156847074-156847133 NC_000001.10 156847074 156847133 entg|neurotrophic tyrosine kinase, receptor, type 1 A_14_P101526
A_14_P101535 FALSE NM_001145025 entg|EDEM2 entg|ER degradation enhancer, mannosidase alpha-like 2 ref|NM_001145025|ref|NM_018217|ref|NR_026728 chr20:33703405-33703452 NC_000020.10 33703405 33703452 entg|ER degradation enhancer, mannosidase alpha-like 2 A_14_P101535
A_14_P101688 FALSE NM_080830 entg|CST11 ref|NM_080830|ref|NM_130794 chr20:23432498-23432542 NC_000020.10 23432498 23432542 A_14_P101688
A_14_P101718 FALSE NM_001198786 entg|POU2F1 entg|POU class 2 homeobox 1 ref|NM_001198786|ref|NM_002697|ref|NR_037163|ref|NM_001198783 chr1:167385239-167385298 NC_000001.10 167385239 167385298 entg|POU class 2 homeobox 1 A_14_P101718
A_14_P101724 FALSE NM_032339 entg|MIEN1 entg|migration and invasion enhancer 1 ref|NM_032339 chr17:37885447-37885501 NC_000017.10 37885447 37885501 entg|migration and invasion enhancer 1 A_14_P101724

Total number of rows: 57806

Table truncated, full table size 9153 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap