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Platform GPL22252 Query DataSets for GPL22252
Status Public on Jun 21, 2017
Title Agilent-079141 PPCD1-3_loci G4126A 8X60 array (Feature number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Agilent-079141 PPCD1-3_loci G4126A
Array design is based on genome build hg19/GRCh37.
Arrays of this design have barcodes that begin with 16079141 or 2579141
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Citation(s) 28046031
Submission date Jul 28, 2016
Last update date Jun 21, 2017
Contact name Anthony J. Aldave
E-mail(s) Aldave@jsei.ucla.edu
Organization name Stein Eye Institute, UCLA
Department Ophthalmology
Lab Cornea Genetics Laboratory
Street address 200 Stein Plaza DSERC 3-143
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Relations
Alternative to GPL22253

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
ENSEMBL
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME
RANGE_GB RefSeq accession.version of chromosome (hg19/GRCh37)
RANGE_START Start coordinate of oligonucleotide relative to RANGE_GB
RANGE_END End coordinate of oligonucleotide relative to RANGE_GB
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC ENSEMBL GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CHROMOSOME RANGE_GB RANGE_START RANGE_END DESCRIPTION
1 192 328 HsCGHBrightCorner pos
2 192 326 DarkCorner pos
3 192 324 DarkCorner pos
4 192 322 A_16_P21101575 FALSE chr20:22726759-22726818 chr20 NC_000020.10 22726759 22726818
5 192 320 A_16_P56397462 FALSE chr10:29573912-29573960 chr10 NC_000010.10 29573912 29573960
6 192 318 A_18_P22386521 FALSE chr20:33130312-33130371 chr20 NC_000020.10 33130312 33130371
7 192 316 A_16_P39698926 FALSE NM_001278469 entg|MON2 entg|MON2 homolog (S. cerevisiae) ref|NM_001278469|ref|NM_001278470|ref|NM_001278471|ref|NM_001278472|ref|NM_015026 chr12:62918857-62918916 chr12 NC_000012.11 62918857 62918916 entg|MON2 homolog (S. cerevisiae)
8 192 314 A_16_P18880660 FALSE NM_020848 entg|KIAA1462 entg|KIAA1462 ref|NM_020848 chr10:30308864-30308923 chr10 NC_000010.10 30308864 30308923 entg|KIAA1462
9 192 312 A_16_P03501982 FALSE chr20:23342100-23342144 chr20 NC_000020.10 23342100 23342144
10 192 310 A_16_P58196603 FALSE NM_024893 entg|SYNDIG1 entg|synapse differentiation inducing 1 ref|NM_024893 chr20:24505771-24505830 chr20 NC_000020.10 24505771 24505830 entg|synapse differentiation inducing 1
11 192 308 A_16_P58194243 FALSE NM_001283018 entg|NAPB entg|N-ethylmaleimide-sensitive factor attachment protein, beta ref|NM_001283018|ref|NM_001283020|ref|NM_001283026|ref|NM_022080|ref|NR_104266 chr20:23370026-23370085 chr20 NC_000020.10 23370026 23370085 entg|N-ethylmaleimide-sensitive factor attachment protein, beta
12 192 306 A_18_P13778840 FALSE chr20:30860814-30860873 chr20 NC_000020.10 30860814 30860873
13 192 304 A_16_P56403157 FALSE chr10:33186331-33186390 chr10 NC_000010.10 33186331 33186390
14 192 302 A_16_P56396864 FALSE chr10:29133673-29133730 chr10 NC_000010.10 29133673 29133730
15 192 300 A_16_P02245261 FALSE chr10:33834893-33834952 chr10 NC_000010.10 33834893 33834952
16 192 298 A_16_P03507603 FALSE chr20:31743866-31743925 chr20 NC_000020.10 31743866 31743925
17 192 296 A_16_P18888070 FALSE chr10:33715608-33715667 chr10 NC_000010.10 33715608 33715667
18 192 294 A_16_P56399552 FALSE NM_001143769 entg|ZNF438 entg|zinc finger protein 438 ref|NM_001143769|ref|NM_001143766|ref|NM_001143767|ref|NM_001143768|ref|NM_001143770|ref|NM_001143771|ref|NM_182755|ref|NR_026560 chr10:31205792-31205851 chr10 NC_000010.10 31205792 31205851 entg|zinc finger protein 438
19 192 292 A_16_P58188920 FALSE NM_015585 entg|CFAP61 entg|cilia and flagella associated protein 61 ref|NM_015585|ref|NM_001167816 chr20:20089488-20089547 chr20 NC_000020.10 20089488 20089547 entg|cilia and flagella associated protein 61
20 192 290 A_16_P58188729 FALSE NM_001242581 entg|RIN2 entg|Ras and Rab interactor 2 ref|NM_001242581|ref|NM_018993 chr20:19962004-19962056 chr20 NC_000020.10 19962004 19962056 entg|Ras and Rab interactor 2

Total number of rows: 62976

Table truncated, full table size 10036 Kbytes.




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Supplementary file Size Download File type/resource
GPL22252_PPCD1-3_loci_079141_D_GEO_20151021.txt.gz 1.8 Mb (ftp)(http) TXT

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