NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL22382 Query DataSets for GPL22382
Status Public on Apr 12, 2017
Title Agilent-034525 Human Keratinocyte Array [Probe Name]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034525 or 2534525.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Aug 29, 2016
Last update date Apr 14, 2017
Contact name Bogi Andersen
Organization name University of California, Irvine
Department Medicine
Lab Andersen
Street address 839 Health Sciences Dr.
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Samples (56) GSM2297526, GSM2297527, GSM2297528, GSM2297529, GSM2297530, GSM2297531 
Series (1)
GSE86193 GRHL3 chromatin binding and the super-enhancer landscape are reorganized in different functional states of epidermal keratinocytes

Data table header descriptions
ID Agilent feature number
NAME NAME
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
ORF Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID Spot identifier

Data table
ID NAME CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID ORF GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE SPOT_ID
(-)3xSLv1 (-)3xSLv1 neg CONTROL
(+)E1A_r60_1 (+)E1A_r60_1 pos CONTROL
(+)E1A_r60_3 (+)E1A_r60_3 pos CONTROL
(+)E1A_r60_a104 (+)E1A_r60_a104 pos CONTROL
(+)E1A_r60_a107 (+)E1A_r60_a107 pos CONTROL
(+)E1A_r60_a135 (+)E1A_r60_a135 pos CONTROL
(+)E1A_r60_a20 (+)E1A_r60_a20 pos CONTROL
(+)E1A_r60_a22 (+)E1A_r60_a22 pos CONTROL
(+)E1A_r60_a97 (+)E1A_r60_a97 pos CONTROL
(+)E1A_r60_n11 (+)E1A_r60_n11 pos CONTROL
(+)E1A_r60_n9 (+)E1A_r60_n9 pos CONTROL
(+)eQC-39 (+)eQC-39 pos CONTROL
(+)eQC-40 (+)eQC-40 pos CONTROL
(+)eQC-41 (+)eQC-41 pos CONTROL
(+)eQC-42 (+)eQC-42 pos CONTROL
A_23_P100092 A_23_P100092 FALSE NM_152455 NM_152455 ZSCAN29 ENST00000396976 ref|NM_152455|ens|ENST00000396976|ens|ENST00000267817|ens|ENST00000396972 chr15:43653388-43653329 Homo sapiens zinc finger and SCAN domain containing 29 (ZSCAN29), mRNA [NM_152455] AGAGAAACCCTATGGGTGTCATGACTGTGGTAAGTGCTTCAGTAAAAGCTCTGCCCTTAA
A_23_P100103 A_23_P100103 FALSE NM_015289 NM_015289 VPS39 ENST00000348544 ref|NM_015289|ens|ENST00000348544|ens|ENST00000318006 chr15:042453027-042452968 Homo sapiens vacuolar protein sorting 39 homolog (S. cerevisiae) (VPS39), mRNA [NM_015289] TGCATTTGCAAGATACCCCAATGGAGTGGTCGTCCATTACTTCTGTTCCAAAGAGGTAAA
A_23_P100127 A_23_P100127 FALSE NM_170589 NM_170589 CASC5 ENST00000260369 ref|NM_170589|ref|NM_144508|ens|ENST00000260369|ens|ENST00000346991 chr15:40917525-40917584 Homo sapiens cancer susceptibility candidate 5 (CASC5), transcript variant 1, mRNA [NM_170589] CGGTCTCTAGCAAAGATTCAGGCATTGGATCTGTTGCAGGTAAACTGAACCTAAGTCCTT
A_23_P100203 A_23_P100203 FALSE NM_001537 NM_001537 HSBP1 ENST00000433866 ref|NM_001537|ens|ENST00000433866|gb|CR626052|gb|CR608180 chr16:83846244-83846303 Homo sapiens heat shock factor binding protein 1 (HSBP1), mRNA [NM_001537] ACAAATTACATGGGGAACATAAAGGAGTGAGATCCTTCTGTGATAAAATGAATTCACCAC
A_23_P10031 A_23_P10031 FALSE NM_000381 NM_000381 MID1 ref|NM_000381|ref|NM_001098624|ref|NM_033289|ref|NM_033290 chrX:10416225-10416166 Homo sapiens midline 1 (Opitz/BBB syndrome) (MID1), transcript variant 1, mRNA [NM_000381] CTTGAAAGATGTAGAAGTCCCTCTATAGTCTAGTATAGTTTACAATAGAGTTGTAAGACC

Total number of rows: 14401

Table truncated, full table size 4354 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL22382_034525_D_GEO_20160824.txt.gz 1.6 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap