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Status
Public on Apr 12, 2017
Title
Agilent-034525 Human Keratinocyte Array [Probe Name]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16034525 or 2534525. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Aug 29, 2016
Last update date
Apr 14, 2017
Contact name
Bogi Andersen
Organization name
University of California, Irvine
Department
Medicine
Lab
Andersen
Street address
839 Health Sciences Dr.
City
Irvine
State/province
CA
ZIP/Postal code
92697
Country
USA
Samples (56)
GSM2297526 , GSM2297527 , GSM2297528 , GSM2297529 , GSM2297530 , GSM2297531
GSM2297532 ,
GSM2297533 ,
GSM2297534 ,
GSM2297535 ,
GSM2297536 ,
GSM2297537 ,
GSM2297538 ,
GSM2297539 ,
GSM2297540 ,
GSM2297541 ,
GSM2297542 ,
GSM2297543 ,
GSM2297544 ,
GSM2297545 ,
GSM2297546 ,
GSM2297547 ,
GSM2297548 ,
GSM2297549 ,
GSM2297550 ,
GSM2297551 ,
GSM2297552 ,
GSM2297553 ,
GSM2297554 ,
GSM2297555 ,
GSM2297556 ,
GSM2297557 ,
GSM2297558 ,
GSM2297559 ,
GSM2297560 ,
GSM2297561 ,
GSM2297562 ,
GSM2297563 ,
GSM2297564 ,
GSM2297565 ,
GSM2297566 ,
GSM2297567 ,
GSM2297568 ,
GSM2297569 ,
GSM2297570 ,
GSM2297571 ,
GSM2297572 ,
GSM2297573 ,
GSM2297574 ,
GSM2297575 ,
GSM2297576 ,
GSM2297577 ,
GSM2297578 ,
GSM2297579 ,
GSM2297580 ,
GSM2297581
Series (1)
GSE86193
GRHL3 chromatin binding and the super-enhancer landscape are reorganized in different functional states of epidermal keratinocytes
Data table header descriptions
ID
Agilent feature number
NAME
NAME
CONTROL_TYPE
Control type
REFSEQ
RefSeqAccession
GB_ACC
GenBankAccession
LOCUSLINK_ID
LocuslinkID
ORF
Gene Symbol
GENE_NAME
Gene Name
UNIGENE_ID
UnigeneID
ENSEMBL_ID
EnsemblID
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
CYTOBAND
Cytoband
DESCRIPTION
Description
GO_ID
GoIDs
SEQUENCE
Sequence
SPOT_ID
Spot identifier
Data table
ID
NAME
CONTROL_TYPE
REFSEQ
GB_ACC
LOCUSLINK_ID
ORF
GENE_NAME
UNIGENE_ID
ENSEMBL_ID
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
GO_ID
SEQUENCE
SPOT_ID
(-)3xSLv1
(-)3xSLv1
neg
CONTROL
(+)E1A_r60_1
(+)E1A_r60_1
pos
CONTROL
(+)E1A_r60_3
(+)E1A_r60_3
pos
CONTROL
(+)E1A_r60_a104
(+)E1A_r60_a104
pos
CONTROL
(+)E1A_r60_a107
(+)E1A_r60_a107
pos
CONTROL
(+)E1A_r60_a135
(+)E1A_r60_a135
pos
CONTROL
(+)E1A_r60_a20
(+)E1A_r60_a20
pos
CONTROL
(+)E1A_r60_a22
(+)E1A_r60_a22
pos
CONTROL
(+)E1A_r60_a97
(+)E1A_r60_a97
pos
CONTROL
(+)E1A_r60_n11
(+)E1A_r60_n11
pos
CONTROL
(+)E1A_r60_n9
(+)E1A_r60_n9
pos
CONTROL
(+)eQC-39
(+)eQC-39
pos
CONTROL
(+)eQC-40
(+)eQC-40
pos
CONTROL
(+)eQC-41
(+)eQC-41
pos
CONTROL
(+)eQC-42
(+)eQC-42
pos
CONTROL
A_23_P100092
A_23_P100092
FALSE
NM_152455
NM_152455
ZSCAN29
ENST00000396976
ref|NM_152455|ens|ENST00000396976|ens|ENST00000267817|ens|ENST00000396972
chr15:43653388-43653329
Homo sapiens zinc finger and SCAN domain containing 29 (ZSCAN29), mRNA [NM_152455]
AGAGAAACCCTATGGGTGTCATGACTGTGGTAAGTGCTTCAGTAAAAGCTCTGCCCTTAA
A_23_P100103
A_23_P100103
FALSE
NM_015289
NM_015289
VPS39
ENST00000348544
ref|NM_015289|ens|ENST00000348544|ens|ENST00000318006
chr15:042453027-042452968
Homo sapiens vacuolar protein sorting 39 homolog (S. cerevisiae) (VPS39), mRNA [NM_015289]
TGCATTTGCAAGATACCCCAATGGAGTGGTCGTCCATTACTTCTGTTCCAAAGAGGTAAA
A_23_P100127
A_23_P100127
FALSE
NM_170589
NM_170589
CASC5
ENST00000260369
ref|NM_170589|ref|NM_144508|ens|ENST00000260369|ens|ENST00000346991
chr15:40917525-40917584
Homo sapiens cancer susceptibility candidate 5 (CASC5), transcript variant 1, mRNA [NM_170589]
CGGTCTCTAGCAAAGATTCAGGCATTGGATCTGTTGCAGGTAAACTGAACCTAAGTCCTT
A_23_P100203
A_23_P100203
FALSE
NM_001537
NM_001537
HSBP1
ENST00000433866
ref|NM_001537|ens|ENST00000433866|gb|CR626052|gb|CR608180
chr16:83846244-83846303
Homo sapiens heat shock factor binding protein 1 (HSBP1), mRNA [NM_001537]
ACAAATTACATGGGGAACATAAAGGAGTGAGATCCTTCTGTGATAAAATGAATTCACCAC
A_23_P10031
A_23_P10031
FALSE
NM_000381
NM_000381
MID1
ref|NM_000381|ref|NM_001098624|ref|NM_033289|ref|NM_033290
chrX:10416225-10416166
Homo sapiens midline 1 (Opitz/BBB syndrome) (MID1), transcript variant 1, mRNA [NM_000381]
CTTGAAAGATGTAGAAGTCCCTCTATAGTCTAGTATAGTTTACAATAGAGTTGTAAGACC
Total number of rows: 14401 Table truncated, full table size 4354 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL22382_034525_D_GEO_20160824.txt.gz
1.6 Mb
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TXT