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Platform GPL22782 Query DataSets for GPL22782
Status Public on Dec 13, 2016
Title Agilent-074512 CBCmouselncRNAmRNA180k
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16074512 or 2574512.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Dec 12, 2016
Last update date Dec 13, 2016
Contact name Ming Cui
E-mail(s) cuiming0403@bjmu.edu.cn
Organization name Chinese Academy of Medical Sciences and Peking Union Medical College
Department Institute of Radiation Medicine,
Street address 238 Baidi Road
City Tianjin
ZIP/Postal code 300192
Country China
 
Samples (144) GSM2424429, GSM2424430, GSM2424431, GSM2424432, GSM2424433, GSM2424434 
Series (17)
GSE92249 Gene expression profile of small intestine tissue from C57BL/6 mice with or without faecal microbiota transplantation
GSE94790 Comparison of lncRNA and mRNA expression profile among the livers of C57BL/6J control mice, high fat diet (HFD) mice and metformin treated mice
GSE94844 Microarray profiling of non-coding RNAs and mRNA expression among the livers of C57BL/6J control mice, high fat diet (HFD) mice and metformin treated mice

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE SEQUENCE
GE_BrightCorner GE_BrightCorner pos
DarkCorner DarkCorner pos
A_55_P1983066 A_55_P1983066 FALSE CTGGGTGCTGACGGACTCACAGCTCAAGGCGATGATGAAGTACGCCGAGTCGCTGAGTGA
A_52_P483409 A_52_P483409 FALSE ATGGACAATTATTTTTCCCTCGTTTTTACTCAAACTAGTATGGCAACTGAGAGTTTCATG
A_55_P2360251 A_55_P2360251 FALSE AGTTCTAACATTTTGTAACACAAATTACCCGTGGGCAGTCACTTAAAATATTGTACCTGG
ri|A830098F13|PX00157A05|1311 ri|A830098F13|PX00157A05|1311 FALSE CCACTTTTTATTGCTGACCCAGGTGCACATTTGTTGGTTTGCAGAATCAGACACTCAGGA
NONMMUT066929 NONMMUT066929 FALSE CTCCTGATAAGATTTTTCTATAATGTTGGAAGCCAAAGTGAAAGGAGACATTGTTAGCTA
ri|B230219D21|PX00070A04|3714 ri|B230219D21|PX00070A04|3714 FALSE GTAGGGGGAGTATCCACACTGAACATCCACTGAAGACTAGTATCTTCTATTTTTCTAGGT
A_55_P2088272 A_55_P2088272 FALSE CTGTTGTCCTCATCACACAAGTATTTGTGACTGTTGAAGGAATTCTCTTGTCAATATTAT
A_55_P2003891 A_55_P2003891 FALSE ATTGGCAGCAGCCAGGGACTTGCTATTGATGAATTTTACATTAAATAGTCCTGTTGCCTT
A_51_P193686 A_51_P193686 FALSE TCAATTAAGATACACGGGGGAGAAAAAAGGTTTTACCCTGTAATACTAATATGTACGTCA
A_55_P2154124 A_55_P2154124 FALSE ACCATGACAACCGGTGACATTGCATACAGTTTAATATTGTGATGGGGTATCTAAGTAGGC
A_52_P558368 A_52_P558368 FALSE GGCCTTGACTCTATGCAACACCCCACATTCGCGTAACGAGTGCACTTTAGGGACCTCAAG
A_51_P171697 A_51_P171697 FALSE TCTGTTTGATTGAGTTTAGGTTCCGTCTGGGGAGGGGTCTAATGTTCTGATGGAGTCATT
A_55_P2278093 A_55_P2278093 FALSE CTGCAAAAATCAGAGACCCCTTTATCCTTAGAGGGATACTTTAGATGTCTATAAGTTTTT
NONMMUT003574 NONMMUT003574 FALSE CACGTATGGATCTGTTCTGGTGGAAGAGTGATCACTATTAAATGAAAGCTTTAATTTCCA
A_52_P585907 A_52_P585907 FALSE CTTCGGGGACTTTATCATCAACGGGCCAGATACTGCCTATGGCATGATGGATTTCACCTA
A_55_P2177736 A_55_P2177736 FALSE TTAAGCTTATGGTGGTCAGTGATTTGCTGTGTTATAGGGGTGATTAGTAATCTTTTGTGA
A_51_P419685 A_51_P419685 FALSE TACTTGTGGTTGTGTTCAAGATGACTGGTGCTTACCAGTTTGGAGCCAGAAACAGAGCAA
ri|A130084B18|PX00692K09|2132 ri|A130084B18|PX00692K09|2132 FALSE AAACTCTTCCAACTGATGTTGAATGACACCACACTAAAATTTGAAACTGCTTAAGAAACC

Total number of rows: 97904

Table truncated, full table size 9933 Kbytes.




Download family Format
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MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL22782_074512_D_GEO_20150409.txt.gz 6.2 Mb (ftp)(http) TXT

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