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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 12, 2017 |
| Title |
Illumina HiSeq 4000 (Bos taurus) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Bos taurus |
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| Submission date |
Apr 12, 2017 |
| Last update date |
Apr 12, 2017 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1384)
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GSM2575741, GSM2575742, GSM2575743, GSM2575744, GSM2575745, GSM2575746
GSM2575747, GSM2575748, GSM2575749, GSM2575750, GSM2575751, GSM2575752, GSM2575753, GSM2575754, GSM2575755, GSM2575756, GSM2575757, GSM2631854, GSM2631855, GSM2631856, GSM2631857, GSM2631858, GSM2631859, GSM2640582, GSM2640583, GSM2640584, GSM2640585, GSM2640586, GSM2640587, GSM2640588, GSM2640589, GSM2855421, GSM2855422, GSM2855423, GSM2855424, GSM2855425, GSM2855426, GSM2855427, GSM2855428, GSM2855429, GSM2863414, GSM2863415, GSM2863416, GSM2863417, GSM2863418, GSM2863419, GSM2863420, GSM2863421, GSM2863422, GSM2863423, GSM2863424, GSM2863425, GSM2863426, GSM2863427, GSM2863428, GSM2863429, GSM2863430, GSM2863431, GSM2863432, GSM2863433, GSM2863434, GSM2863435, GSM2976783, GSM2976784, GSM2976785, GSM2976786, GSM2976787, GSM2976788, GSM3024335, GSM3024336, GSM3024337, GSM3024338, GSM3024339, GSM3024340, GSM3024341, GSM3024342, GSM3024343, GSM3076165, GSM3076166, GSM3076167, GSM3076168, GSM3076169, GSM3076170, GSM3076171, GSM3101727, GSM3101728, GSM3101729, GSM3101730, GSM3101731, GSM3101732, GSM3101733, GSM3101734, GSM3101735, GSM3101736, GSM3101737, GSM3101738, GSM3101739, GSM3101740, GSM3101741, GSM3101742, GSM3101743, GSM3101744, GSM3101745, GSM3101746, GSM3101747, GSM3101748, GSM3101749, GSM3101750, GSM3101751, GSM3101752, GSM3101753, GSM3103327, GSM3103328, GSM3103329, GSM3103330, GSM3103331, GSM3103332, GSM3103333, GSM3103334, GSM3103335, GSM3103336, GSM3103337, GSM3103338, GSM3103339, GSM3103340, GSM3103341, GSM3103342, GSM3103343, GSM3103344, GSM3103345, GSM3103346, GSM3103347, GSM3103348, GSM3103349, GSM3103350, GSM3103351, GSM3103352, GSM3103353, GSM3145531, GSM3145532, GSM3145533, GSM3145534, GSM3145535, GSM3145536, GSM3145537, GSM3145538, GSM3145539, GSM3259584, GSM3259585, GSM3259586, GSM3259587, GSM3259588, GSM3259589, GSM3259590, GSM3259591, GSM3259592, GSM3259593, GSM3259594, GSM3259595, GSM3259596, GSM3259597, GSM3259598, GSM3259599, GSM3259600, GSM3259601, GSM3259602, GSM3259603, GSM3259604, GSM3259605, GSM3261608, GSM3261609, GSM3261610, GSM3261611, GSM3261612, GSM3261613, GSM3261614, GSM3261615, GSM3261616, GSM3261617, GSM3261618, GSM3261619, GSM3261620, GSM3261621, GSM3261622, GSM3261623, GSM3261624, GSM3261625, GSM3261626, GSM3261627, GSM3261628, GSM3261629, GSM3261630, GSM3261631, GSM3261632, GSM3261633, GSM3261634, GSM3261635, GSM3261636, GSM3261637, GSM3261638, GSM3261639, GSM3261640, GSM3261641, GSM3261642, GSM3261643, GSM3261644, GSM3261645, GSM3261646, GSM3261647, GSM3261648, GSM3261649, GSM3261650, GSM3261651, GSM3261652, GSM3261653, GSM3261654, GSM3261655, GSM3261656, GSM3261657, GSM3261658, GSM3261659, GSM3261660, GSM3261661, GSM3261662, GSM3261663, GSM3261664, GSM3261665, GSM3261666, GSM3261667, GSM3261668, GSM3261669, GSM3261670, GSM3261671, GSM3261672, GSM3261673, GSM3261674, GSM3261675, GSM3261676, GSM3261677, GSM3261678, GSM3261679, GSM3261680, GSM3261681, GSM3261682, GSM3261683, GSM3261684, GSM3261685, GSM3261686, GSM3261687, GSM3261688, GSM3261689, GSM3261690, GSM3261691, GSM3261692, GSM3261693, GSM3261694, GSM3261695, GSM3261696, GSM3261697, GSM3261698, GSM3261699, GSM3261700, GSM3261701, GSM3261702, GSM3261703, GSM3261704, GSM3261705, GSM3261706, GSM3261707, GSM3261708, GSM3261709, GSM3261710, GSM3261711, GSM3261712, GSM3261713, GSM3261714, GSM3261715, GSM3261716, GSM3261717, GSM3261718, GSM3261719, GSM3261720, GSM3261721, GSM3261722, GSM3261723, GSM3261724, GSM3261725, GSM3261726, GSM3261727, GSM3261728, GSM3261729, GSM3261730, GSM3261731, GSM3261732, GSM3261733, GSM3261734, GSM3261735, GSM3261736, GSM3261737, GSM3261738, GSM3261739, GSM3261740, GSM3261741, GSM3261742, GSM3261743, GSM3261744, GSM3261745, GSM3261746, GSM3261747, GSM3261748, GSM3261749, GSM3261750, GSM3261751, GSM3261752, GSM3261753, GSM3261754, GSM3261755, GSM3261756, GSM3261757, GSM3261758, GSM3261759, GSM3261760, GSM3261761, GSM3261762, GSM3261763, GSM3261764, GSM3261765, GSM3261766, GSM3261767, GSM3261768, GSM3261769, GSM3261770, GSM3261771, GSM3261772, GSM3261773, GSM3261774, GSM3261775, GSM3261776, GSM3261777, GSM3261778, GSM3261779, GSM3261780, GSM3261781, GSM3261782, GSM3261783, GSM3261784, GSM3261785, GSM3261786, GSM3261787, GSM3261788, GSM3261789, GSM3261790, GSM3261791, GSM3261792, GSM3261793, GSM3261794, GSM3261795, GSM3261796, GSM3374736, GSM3374737, GSM3374738, GSM3374739, GSM3374740, GSM3374741, GSM3374742, GSM3374743, GSM3374744, GSM3374745, GSM3374746, GSM3374747, GSM3374748, GSM3374749, GSM3374750, GSM3428156, GSM3428157, GSM3428158, GSM3428159, GSM3428160, GSM3428161, GSM3428162, GSM3428163, GSM3428164, GSM3466349, GSM3466350, GSM3466351, GSM3475607, GSM3475608, GSM3475609, GSM3475610, GSM3475611, GSM3475612, GSM3488844, GSM3488845, GSM3488846, GSM3488847, GSM3488848, GSM3488849, GSM3520495, GSM3520496, GSM3520497, GSM3520498, GSM3520499, GSM3520500, GSM3520501, GSM3520502, GSM3520503, GSM3639234, GSM3639235, GSM3639236, GSM3639237, GSM3639238, GSM3639239, GSM3721750, GSM3721751, GSM3721754, GSM3721755, GSM3721756, GSM3721757, GSM3721758, GSM3721759, GSM3721762, GSM3721763, GSM3721764, GSM3721765, GSM3762845, GSM3762846, GSM3762847, GSM3762848, GSM3762849, GSM3762850, GSM3762851, GSM3762852, GSM3762853, GSM3762854, GSM3762855, GSM3822222, GSM3822223, GSM3822224, GSM3822225, GSM3822226, GSM3822227, GSM3865015, GSM3865016, GSM3865017, GSM3865018, GSM3865019, GSM3865020, GSM3905886, GSM3905887, GSM3905888, GSM3905889, GSM3905890, GSM3913256, GSM3913257, GSM3928108, GSM3928109, GSM3928110, GSM3928111, GSM3928112, GSM3928113, GSM3963103, GSM3963104, GSM3963105, GSM3963106, GSM3963107, GSM3963108, GSM3963109, GSM3963110, GSM3963111, GSM3963112, GSM3963113, GSM3963114, GSM3963115, GSM3963116, GSM3963117, GSM3963118, GSM3963119, GSM4007042, GSM4007043, GSM4007044, GSM4007045, GSM4007046, GSM4007047, GSM4007048, GSM4007049, GSM4007050, GSM4056600, GSM4056601, GSM4056602, GSM4056603, GSM4056604, GSM4056605, GSM4056606, GSM4056607, GSM4056608, GSM4056609, GSM4056610, GSM4056611, GSM4056612, GSM4056613...
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| Series (88)
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| GSE97706 |
miR-126-5p by direct targeting of JNK-interacting protein-2 (JIP-2) plays a key role in Theileria-infected macrophage virulence |
| GSE99072 |
KMT1A (SUV39H1) prevents somatic cell nuclear transfer (SCNT) mediated reprogramming |
| GSE99294 |
Expression profiling reveals differential expressed genes between bovine IVF and SCNT embryos |
| GSE106843 |
Transcriptomic analysis of the early phase of BoMac cell stimulation with a viral and a bacterial pathogen associated molecular patterns. |
| GSE107268 |
RNA-seq of backfat tissue in beef cattle |
| GSE110039 |
Efficient derivation of stable primed pluripotent embryonic stem cells from bovine blastocysts [ChIP-seq] |
| GSE110040 |
Efficient derivation of stable primed pluripotent embryonic stem cells from bovine blastocysts |
| GSE111162 |
miRNA-Seq analysis of the early phase of BoMac cell stimulation with a viral and a bacterial pathogen associated molecular patterns |
| GSE112674 |
Development of in vitro enteroids derived from bovine small intestinal crypts |
| GSE113264 |
Genome wide transcriptome analysis provides bases on colonic mucosal immune system development in neonatal calves affected by colostrum feeding strategies in neonatal calves |
| GSE113331 |
Delayed colostrum feeding influences ileum transcriptome profile in neonatal calves |
| GSE114596 |
KDM6A improves the efficiency of nuclear transfer reprogramming in bovine |
| GSE116731 |
Initial host response to mycobacterial infection is orchestrated through H3K4 methylation-mediated RNA polymerase II binding at key immune function genes [ChIP-seq] |
| GSE116732 |
Initial host response to mycobacterial infection is orchestrated through H3K4 methylation-mediated RNA polymerase II binding at key immune function genes [RNA-seq] |
| GSE116734 |
Initial host response to mycobacterial infection is orchestrated through H3K4 methylation-mediated RNA polymerase II binding at key immune function genes. |
| GSE116775 |
Beef cattle multi-tissue transcriptome |
| GSE119445 |
In utero heat stress alters the offspring epigenome [methylation] |
| GSE121227 |
Expression profiling reveals differential expressed genes between bovine IVF and SCNT embryos |
| GSE122418 |
Transcriptome of undifferentiated bovine trophoblast cells |
| GSE122599 |
Dynamics of mitochondrial DNA methylation in oocytes, embryos and granulosa cells |
| GSE122933 |
Analysis of long non-coding RNA and mRNA expression in bovine macrophages brings up novel aspects of Mycobacterium avium subspecies paratuberculosis infections |
| GSE124100 |
Identification of somatic memory genes during bovine nuclear reprogramming by transcriptome sequencing |
| GSE127808 |
New Insights from Transcriptome Profiling of Bovine Vaginal Epithelial Cell Response to Isolated Lactobacillus |
| GSE129760 |
Establishment of bovine expanded potential stem cells |
| GSE131057 |
Cow mammary glande miRNomes |
| GSE131849 |
Divergences of sperm DNA methylomes between monozygotic twin seed bulls reveal fertility-related genes (RNA-Seq) |
| GSE131851 |
Divergences of sperm DNA methylomes between monozygotic twin seed bulls reveal fertility-related genes |
| GSE132452 |
Detection and Integrated Analysis of LncRNA and mRNA Relevant to Plateau Adaptation of Yak |
| GSE133333 |
Genome-wide Analysis of mRNAs and lncRNAs in Mycoplasma Bovis infected and non-infected bovine mammray gland tissues. |
| GSE133613 |
Alterations of mRNAs in MDBK cells expressing BPV-13 E5 |
| GSE133614 |
Alterations of miRNAs and mRNAs in MDBK cells expressing BPV-13 E5 |
| GSE133827 |
Transcriptome Analysis of a Bovine Mammary Epithelial Cell Model with Different Milk Fat Synthesis Capacity |
| GSE134670 |
Characterization of Holstein and Normande whole milk miRNomes highlights breed specificities |
| GSE135377 |
Novel roles for GZMA and RASGRP1 in suppressing dissemination of both Theileria annulata-transformed macrophages and human B-lymphoma cells |
| GSE136722 |
Distinct Transcriptomic Profile of Monocyte-Derived Macrophages in Response to Escherichia Coli: When Genetics Rules |
| GSE138011 |
Challenging bovine foot skin fibroblasts with digital dermatitis treponemes: effects on global gene expression |
| GSE139306 |
RNA-Seq analyses reveal that endothelial activation and fibrosis are induced early and progressively by Besnoitia besnoiti host cell invasion and proliferation |
| GSE146762 |
Cow mammary gland miRNomes before and after food restriction |
| GSE147176 |
Transcriptomic profiling of bovine ovarian cortical tissue cultured with FSH |
| GSE149194 |
Feeding a Saccharomyces cerevisiae fermentation product improves udder health and immune response to a Streptococcus uberis mastitis challenge in mid-lactating dairy |
| GSE153956 |
Molecular mechanisms in lung tissue of yak provide insights into high-altitude adaptation by transcriptome-wide analysis [RNA-seq] |
| GSE153962 |
Molecular mechanisms in lung tissue of yak provide insights into high-altitude adaptation by transcriptome-wide analysis [miRNA-seq] |
| GSE153963 |
Molecular mechanisms in lung tissue of yak provide insights into high-altitude adaptation by transcriptome-wide analysis |
| GSE158117 |
Single-cell RNA-Seq reveals novel myofibroblast charactering epithelial features in the mammary gland of dairy cows |
| GSE158416 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (CTCF ChIP-Seq) |
| GSE158418 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27ac ChIP-Seq) |
| GSE158419 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27me3 ChIP-Seq) |
| GSE158427 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me1 ChIP-Seq) |
| GSE158429 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me3 ChIP-Seq) |
| GSE158430 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility |
| GSE159268 |
Differential expression of genes associated with innate immunity and oncogenesis is linked to susceptibility to tropical theileriosis |
| GSE161050 |
Transcriptome profiling of m6A mRNA modification in inflammation of bovine mammary epithelial cells infected by Staphylococcus aureus and Escherichia coli |
| GSE162156 |
Whole blood transcriptome analysis of feedlot cattle with and without bovine respiratory disease |
| GSE162952 |
Single-cell RNA-sequencing of bovine fetal gonads using 10x Genomics |
| GSE163222 |
Heat stress and immune response phenotype affect DNA methylation in blood mononuclear cells from Holstein dairy cows |
| GSE165476 |
Exposure to non-esterified fatty acids results in short- and long-term changes in the ovarian environment and granulosa cells |
| GSE166473 |
Single-cell RNA analyses of cattle ruminal epithelial cells |
| GSE169593 |
PGE2 supplementation of oocyte culture media improves the developmental and cryotolerance performance of bovine blastocysts derived from a serum-free in vitro production system, mirroring the inner cell mass transcriptome |
| GSE169624 |
Transcriptome of bovine induced pluripotent cells (iPSCs) |
| GSE169638 |
Impact of negative energy balance on transcriptomic profiles of three endometrial cell types isolated by laser capture microdissection in postpartum dairy cows |
| GSE169674 |
Transcriptome of in vitro fertilized 7-day-old bovine blastocysts |
| GSE171104 |
Molecular characterization of bovine embryonic stem cells derived from IVF, cloned, and parthenogenetic embryos |
| GSE175615 |
Conservation and divergence of DNA methylation patterns and functions in vertebrates |
| GSE180279 |
The uterine secretory cycle: recurring physiology of endometrial outputs that setup the uterine luminal microenvironment |
| GSE181252 |
Transcriptome of bovine trophoblast stem cells (TSC) - in self-renewal and differentiation |
| GSE181659 |
Establishment of a bovine rumen epithelial cell line |
| GSE182151 |
Effects of body condition loss in lactating dairy cows on serum lipid profiles and the oocyte transcriptome |
| GSE182932 |
Progesterone differentially affects the transcriptomic profiles of cow endometrial cell types |
| GSE184128 |
scRNA-seq analysis of cultured bovine satellite cells |
| GSE186481 |
Differential gene expression induced by Leukemia inhibitory factor in bovine aortic endothelial cells (BAE) vs choroidal endothelial (BCE) cells |
| GSE189689 |
Transcriptome sequencing of fat-1 transgenic bovine fetal fibroblasts and wild-type |
| GSE190293 |
Genome-wide DNA-methylation analysis of fat-1 transgenic bovine fetal fibroblasts and wild-type |
| GSE192545 |
RNASeq PROFILES RELATED TO ENDOMETRIAL HEALTH |
| GSE193595 |
lncRNA expression profile of bovine monocyte derived macrophages infected with Mycobacterium avium subsp. Paratuberculosis |
| GSE197116 |
Effects of excessive FSH dose on granulosa cell, cumulus cell and oocyte transcriptomes in small ovarian reserve heifers |
| GSE197146 |
5 tissues from cattle RNA-seq analysis |
| GSE200603 |
Differences in the epigenetic modification of somatic cloned cattle from different types of donors still exist after reprogramming and differentiation |
| GSE206156 |
The evolutionarily conserved gene Arrdc5 is required for male fertility in mice |
| GSE207759 |
Milk microRNA variations in different milk compartments during feed restrictions of different intensities in dairy cows |
| GSE216377 |
Glis1 and oxaloacetate in nucleus pulposus stromal cell somatic reprogramming and survival |
| GSE217317 |
Applying multi-omics data to study the genetic background of bovine respiratory disease infection in feedlot crossbred cattle |
| GSE217369 |
Transcriptomic changes underlying glucocorticoid-induced suppression of milk production by dairy cows |
| GSE225913 |
Prediction of subclinical endometritis in postpartum dairy cows from circulating cell-free miRNA profiles |
| GSE227249 |
Pre-weaning heat stress alters liver DNA methylation in dairy calves [Bisulfite-Seq] |
| GSE227325 |
Pre-weaning heat stress alters liver DNA methylation in dairy calves |
| GSE227599 |
The uterine secretory cycle: shifts to the recurring physiology of endometrial outputs in the presence of a preimplantation embryo |
| GSE248362 |
circAMN1/miR-205_R-1/SLC39A8 axis regulates ferroptosis in endometrial epithelial cells and regulates the occurrence of retained placenta in cows |
| GSE261131 |
RNA‐sequencing reveals genes linked with oocyte developmental potential in bovine cumulus cells |
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| Supplementary data files not provided |
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