 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Nov 21, 2017 |
| Title |
Agilent-031125 Desulfitobacterium hafniense oligonucleotide microarray 8x60k |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Desulfitobacterium hafniense |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
Array was designed by using Agilent eArray software. Custom gene expression arrays were generated by Agilent Technologies in 8X60K format. See manufacturer's web site at http://www.agilent.com/.
|
| |
|
| Description |
A custom-designed based on the complete genome sequences of D. hafniense DCB-2 and Y51 (NCBI Genbank accession numbers NC_007907 and NC_011830, respectively). The array contains 21905 distinct 45 to-60 oligonucleotides designed with PICKY (Chou et al., 2004; Chou et al., 2009), including two or three probes per target transcript, as well as sense and antisense probes targeting intergenic regions that were larger than 60 oligonucleotides. In total, 11652 probes targeting genes and intergenic regions shared by both genomes. Probes were printed in duplicate on the Agilent 8 x 60 K custom gene expression microarray platform, containing in addition 1319 Agilent control probes.
|
| |
|
| Submission date |
Nov 20, 2017 |
| Last update date |
Nov 21, 2017 |
| Contact name |
Ye Tian |
| E-mail(s) |
ye.tian@wur.nl
|
| Phone |
+31317480046
|
| Organization name |
Wageningen University
|
| Department |
AFSG
|
| Lab |
The Laboratory of Microbiology
|
| Street address |
Stippeneng 4
|
| City |
Wageningen |
| ZIP/Postal code |
6708 WE |
| Country |
Netherlands |
| |
|
| Samples (14)
|
GSM2861693, GSM2861694, GSM2861695, GSM2861696, GSM2861697, GSM2861698
|
| Series (2) |
| GSE107146 |
Metabolic flexibility of a prospective bioremediator: Desulfitobacterium hafniense Y51 challenged in chemostats |
| GSE115548 |
Dual bioaugmentation with Desulfitobacterium hafniense Y51 and redox-trained fermenting communities for decontamination of PCE polluted river sediment: a microcosm study |
|
| Supplementary file |
Size |
Download |
File type/resource |
| GPL24288_annotation_table.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
|
|
|
|
 |
Less...
More...