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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 31, 2018 |
| Title |
Illumina NovaSeq 6000 (Zea mays) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Zea mays |
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| Submission date |
Jul 31, 2018 |
| Last update date |
Jul 31, 2018 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (4090)
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GSM3316209, GSM3316211, GSM3316212, GSM3316213, GSM3316214, GSM3316215
GSM3316219, GSM3316220, GSM3316221, GSM3720001, GSM3720002, GSM3720003, GSM3720004, GSM3720005, GSM3720006, GSM3720007, GSM3720008, GSM3720009, GSM4089081, GSM4089082, GSM4089083, GSM4089084, GSM4089085, GSM4089086, GSM4089087, GSM4089088, GSM4089089, GSM4089090, GSM4089091, GSM4089092, GSM4089093, GSM4089094, GSM4089095, GSM4089096, GSM4089097, GSM4089098, GSM4089099, GSM4089100, GSM4089101, GSM4089102, GSM4089103, GSM4089104, GSM4089105, GSM4089106, GSM4089107, GSM4089108, GSM4089109, GSM4089110, GSM4089111, GSM4089112, GSM4089113, GSM4110694, GSM4125325, GSM4125326, GSM4125327, GSM4125328, GSM4125329, GSM4125330, GSM4125331, GSM4125332, GSM4125333, GSM4125334, GSM4403922, GSM4403923, GSM4403924, GSM4403925, GSM4403926, GSM4403927, GSM4403928, GSM4403929, GSM4403930, GSM4403931, GSM4403932, GSM4403933, GSM4491861, GSM4491862, GSM4491863, GSM4491864, GSM4491865, GSM4491866, GSM4491867, GSM4491868, GSM4491869, GSM4491870, GSM4491871, GSM4491872, GSM4491873, GSM4491874, GSM4491875, GSM4491876, GSM4491877, GSM4491878, GSM4491879, GSM4491880, GSM4491881, GSM4491882, GSM4491883, GSM4505153, GSM4505154, GSM4505155, GSM4505156, GSM4505157, GSM4505158, GSM4555065, GSM4555066, GSM4555067, GSM4555068, GSM4555069, GSM4555070, GSM4555071, GSM4555072, GSM4555073, GSM4555074, GSM4555075, GSM4555076, GSM4696881, GSM4696882, GSM4696883, GSM4696884, GSM4696885, GSM4696886, GSM4696887, GSM4696888, GSM4696889, GSM4696890, GSM4720601, GSM4720602, GSM4720603, GSM4720604, GSM4720605, GSM4720606, GSM4720607, GSM4720608, GSM4720609, GSM4720610, GSM4720611, GSM4720612, GSM4720613, GSM4720614, GSM4720615, GSM4720616, GSM4720617, GSM4720618, GSM4749685, GSM4749686, GSM4749687, GSM4749688, GSM4749689, GSM4749690, GSM4749691, GSM4749692, GSM4749693, GSM4749694, GSM4749695, GSM4749696, GSM4749697, GSM4749698, GSM4749699, GSM4749700, GSM4749701, GSM4749702, GSM4749703, GSM4749704, GSM4749705, GSM4749706, GSM4749707, GSM4749708, GSM4749709, GSM4749710, GSM4749711, GSM4749712, GSM4749713, GSM4749714, GSM4749715, GSM4749716, GSM4749717, GSM4749718, GSM4749719, GSM4749720, GSM4749721, GSM4756686, GSM4756687, GSM4756688, GSM4756689, GSM4756691, GSM4797953, GSM4797954, GSM4797955, GSM4797956, GSM4797957, GSM4797958, GSM4797959, GSM4811139, GSM4811140, GSM4811141, GSM4811142, GSM4811143, GSM4811144, GSM4811145, GSM4811146, GSM4811147, GSM4811148, GSM4811149, GSM4811150, GSM4811151, GSM4811152, GSM4811153, GSM4811154, GSM4811155, GSM4811156, GSM4811157, GSM4811158, GSM4811159, GSM4811160, GSM4811161, GSM4811162, GSM4811163, GSM4811164, GSM4811165, GSM4811166, GSM4811167, GSM4811168, GSM4811169, GSM4811170, GSM4811171, GSM4811172, GSM4811173, GSM4811174, GSM4811175, GSM4811176, GSM4811177, GSM4811178, GSM4811179, GSM4811180, GSM4811181, GSM4811182, GSM4811183, GSM4811184, GSM4811185, GSM4811186, GSM4811187, GSM4811188, GSM4811189, GSM4811190, GSM4811191, GSM4811192, GSM4811193, GSM4811194, GSM4811195, GSM4811196, GSM4811197, GSM4811198, GSM4811199, GSM4811200, GSM4811201, GSM4811202, GSM4811203, GSM4811204, GSM4811205, GSM4811206, GSM4811207, GSM4811208, GSM4811209, GSM4811210, GSM4811211, GSM4811212, GSM4811213, GSM4811214, GSM4811215, GSM4811216, GSM4811217, GSM4811218, GSM4811219, GSM4811220, GSM4811221, GSM4811222, GSM4811223, GSM4811224, GSM4811225, GSM4811226, GSM4811227, GSM4811228, GSM4811229, GSM4811230, GSM4811231, GSM4811232, GSM4811233, GSM4811234, GSM4811235, GSM4811236, GSM4811237, GSM4811238, GSM4811239, GSM4811240, GSM4811241, GSM4811242, GSM4811243, GSM4811244, GSM4811245, GSM4811246, GSM4811247, GSM4811248, GSM4811249, GSM4811250, GSM4811251, GSM4811252, GSM4811253, GSM4811254, GSM4811255, GSM4811256, GSM4811257, GSM4811258, GSM4811259, GSM4811260, GSM4811261, GSM4811262, GSM4811263, GSM4811264, GSM4811265, GSM4811266, GSM4811267, GSM4811268, GSM4811269, GSM4811270, GSM4811271, GSM4811272, GSM4811273, GSM4811274, GSM4811275, GSM4811276, GSM4811277, GSM4811278, GSM4811279, GSM4811280, GSM4811281, GSM4811282, GSM4886812, GSM4951194, GSM4951195, GSM4951196, GSM4951197, GSM4951198, GSM4951199, GSM4951200, GSM4951201, GSM4951202, GSM4951203, GSM4951204, GSM4951205, GSM5210571, GSM5210572, GSM5210573, GSM5210574, GSM5210575, GSM5210576, GSM5266693, GSM5266694, GSM5266695, GSM5266696, GSM5266697, GSM5266698, GSM5266699, GSM5266700, GSM5266701, GSM5266702, GSM5266703, GSM5266704, GSM5266705, GSM5266706, GSM5266707, GSM5266708, GSM5266709, GSM5266710, GSM5266711, GSM5266712, GSM5266713, GSM5266714, GSM5266715, GSM5266716, GSM5266717, GSM5266718, GSM5266719, GSM5266720, GSM5266721, GSM5266722, GSM5266723, GSM5266724, GSM5266725, GSM5266726, GSM5266727, GSM5266728, GSM5266729, GSM5266730, GSM5266731, GSM5266732, GSM5266733, GSM5266734, GSM5266735, GSM5266736, GSM5266737, GSM5266738, GSM5266739, GSM5266740, GSM5266741, GSM5266742, GSM5266743, GSM5266744, GSM5266745, GSM5266746, GSM5266747, GSM5266748, GSM5266749, GSM5266750, GSM5266751, GSM5266752, GSM5266753, GSM5266754, GSM5266755, GSM5266756, GSM5266757, GSM5266758, GSM5266759, GSM5266760, GSM5266761, GSM5266762, GSM5266763, GSM5266764, GSM5266765, GSM5266766, GSM5266767, GSM5266768, GSM5266769, GSM5266770, GSM5266771, GSM5266772, GSM5266773, GSM5266774, GSM5266775, GSM5266776, GSM5266777, GSM5266778, GSM5266779, GSM5266780, GSM5266781, GSM5266782, GSM5266783, GSM5266784, GSM5266785, GSM5266786, GSM5266787, GSM5266788, GSM5266789, GSM5266790, GSM5266791, GSM5266792, GSM5266793, GSM5266794, GSM5266795, GSM5266796, GSM5285315, GSM5285316, GSM5285317, GSM5285318, GSM5285319, GSM5285320, GSM5285321, GSM5285322, GSM5285323, GSM5285324, GSM5285325, GSM5285326, GSM5285327, GSM5285328, GSM5285329, GSM5285330, GSM5285331, GSM5285332, GSM5285333, GSM5285334, GSM5285335, GSM5285336, GSM5285337, GSM5285338, GSM5285339, GSM5285340, GSM5285341, GSM5285342, GSM5285343, GSM5285344, GSM5285345, GSM5285346, GSM5285347, GSM5285348, GSM5285349, GSM5285350, GSM5285351, GSM5285352, GSM5285353, GSM5285354, GSM5285355...
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| Series (79)
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| GSE117964 |
High expressed genes enriched with H3K27me3 in maize genome [ChIP-seq] |
| GSE117992 |
High expressed genes enriched with H3K27me3 in maize genome |
| GSE129680 |
needle1 (ndl1) encodes a mitochondria localized ATPase required for thermotolerant maize growth [field] |
| GSE129684 |
needle1 (ndl1) encodes a mitochondria localized ATPase required for thermotolerant maize growth |
| GSE137826 |
Identify gene networks in maize and beneficial fungus Trichoderma virens that result in induced systemic resistance (ISR) |
| GSE138526 |
High-Throughput Single cell RNA sequencing of Mesophyll cells from Maize |
| GSE138961 |
Heat-killed Fusarium-elicited W22-stem time_course |
| GSE141324 |
Next generation sequencing facilitates quantitative analysis of maize 35 mitochondrial genes in dek53-ref and wild-type (WT) kernels |
| GSE146666 |
RNA-seq for two maize inbred lines |
| GSE149186 |
Genomic imbalance determines positive and negative modulation of gene expression in diploid maize |
| GSE149577 |
THE FUSED LEAVES1-ADHERENT1 REGULATORY MODULE IS REQUIRED FOR MAIZE CUTICLE DEVELOPMENT AND ORGAN SEPARATION |
| GSE155178 |
A cis-regulatory atlas of maize single cells |
| GSE156026 |
Comparative transcriptome analysis reveals conserved defense responses in maize and sorghum to Setosphaeria turcica |
| GSE156986 |
Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize |
| GSE157149 |
Characterization of distinct types of open chromatin and their impacts on gene transcription in maize [MH-seq] |
| GSE157150 |
Characterization of distinct types of open chromatin and their impacts on gene transcription in maize [MNase-seq] |
| GSE157151 |
Characterization of distinct types of open chromatin and their impacts on gene transcription in maize [ChIP-seq] |
| GSE157152 |
Characterization of distinct types of open chromatin and their impacts on gene transcription in maize |
| GSE158330 |
Structural Variation at the Maize wuschel1 Locus Alters Stem Cell Organization in Inflorescences |
| GSE158816 |
A time-resolved transcriptome atlas of maize grain development |
| GSE160944 |
Leveraging histone modifications to improve genome annotation |
| GSE162411 |
Strigolactones and auxin cooperate to regulate lateral root development in response to nitrate |
| GSE165787 |
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes |
| GSE168538 |
N4-acetyldeoxycytosine DNA modification marks euchromatin regions in Arabidopsis thaliana. |
| GSE169600 |
Boron homeostasis functions in meristem maintenance in maize by regulating knotted1, cell cycle, and hormone signaling pathways |
| GSE172302 |
Ground tissue circuitry regulates organ complexity in monocot roots |
| GSE173087 |
Ground tissue circuitry regulates organ complexity in monocot roots [root meristem scRNA-seq] |
| GSE174059 |
Investigation of Gene Network of NKD1, NKD2 and OPAQUE-2 Associated with Maize Endosperm Development |
| GSE175505 |
Allele-specific RNA-seq of single pollen precursors |
| GSE175916 |
Determining the sporophyte-to-gametophyte transition in maize |
| GSE179629 |
Direct and indirect transcriptional effects of abiotic stress in Zea mays plants defective in RNA-directed DNA methylation |
| GSE183230 |
RNA-seq of two maize inbred lines B73 and Mo17 |
| GSE183422 |
Beyond the protoplast: isolating and analyzing fixed cells for plant single-cell research |
| GSE188462 |
Transcriptome of anthers from both the ZmCCT-active and non-transgenic control plants. |
| GSE188784 |
ZmCOI2a and ZmCOI2b redundantly regulate anther dehiscence and gametophytic male fertility in maize |
| GSE197144 |
Simple and Accurate Transcriptional Start Site Identification Using Smar2C2 |
| GSE199300 |
The transcriptomic responses of maize stalks infected with Fusarium graminearum PH-1 and Δcfem1 |
| GSE199303 |
Maize stalks infected with Fusarium graminearum PH-1 and Δcfem1 |
| GSE199932 |
A multi-omics integrative network map of maize. |
| GSE200450 |
Systematic optimization of Cas12a base editors in wheat and maize using the ITER platform |
| GSE200905 |
Laser-capture microdissection and RNA sequencing of aleurone and starchy endosperm of maize R1 genotypes |
| GSE201119 |
Transcriptomic responses to phosphate limitation in maize lines with different breeding history |
| GSE201640 |
Decoding the gene regulatory network of endosperm differentiation in maize [scRNA-seq] |
| GSE201671 |
Decoding the gene regulatory network of endosperm differentiation in maize [RNA-seq] |
| GSE201700 |
Decoding the gene regulatory network of endosperm differentiation in maize [DAP-seq] |
| GSE201701 |
Decoding the gene regulatory network of endosperm differentiation in maize |
| GSE206951 |
The Northern Corn Leaf Blight Resistance Gene, Ht1, Encodes an NLR Immune Receptor |
| GSE206952 |
The NLRomes of Zea mays NAM founder lines and Zea Luxurians Display Presence Absence Variation, Integrated Domain Diversity and Mobility |
| GSE213949 |
Low red to far-red light environments alter nitrogen assimilation in corn (Zea mays) |
| GSE214166 |
DAP-seq Analysis of Transcription Factors Associated with Maize Endosperm Development |
| GSE214415 |
Effect of NKD1, NKD2 and O2 on Chromatin Accessible Regions |
| GSE217926 |
The RHW1-ZCN4 regulatory pathway confers natural variation of husk leaf width in maize |
| GSE219091 |
The establishment of the anther somatic niche with single cell sequencing |
| GSE220124 |
Transcriptome of ZmPMP3g overexpressing maize inbred line Ye478, and wild type Ye478 under control, moderate drought, exogenous abscisic acid, or treatment combinations |
| GSE220176 |
ChIP-seq of maize transcription factor LOB30 |
| GSE220941 |
Combination of transcriptomic, proteomic and degradomic profiling reveals common and distinct patterns of pathogen-induced cell death in maize |
| GSE222151 |
The initiation and maintenance of CHH methylation and its effects on gene expression are unique in maize (WBGS) |
| GSE222152 |
The initiation and maintenance of CHH methylation and its effects on gene expression are unique in maize (RNA-Seq) |
| GSE222153 |
The initiation and maintenance of CHH methylation and its effects on gene expression are unique in maize (small RNA-Seq) |
| GSE222155 |
The initiation and maintenance of CHH methylation and its effects on gene expression are unique in maize |
| GSE223821 |
Integrative analysis of transcriptome, microRNA-seq and metabolome reveals an essential role of exogenous melatonin in enhancing salt stress tolerance during seed germination in maize [RNA-seq] |
| GSE223824 |
Integrative analysis of transcriptome, microRNA-seq and metabolome reveals an essential role of exogenous melatonin in enhancing salt stress tolerance during seed germination in maize |
| GSE224891 |
MSH7 confers quantitative variation in pollen fertility and boosts grain yield in maize |
| GSE225118 |
A pan-grass transcriptome reveals patterns of cellular divergence in crops |
| GSE225415 |
ZmRPN1 confers quantitative variation in pollen number and boosts hybrid seed production in maize |
| GSE225929 |
A transcriptional activator effector of Ustilago maydis regulates hyperplasia in maize during pathogen-induced tumor formation |
| GSE227472 |
ZmNRT1.1B (ZmNPF6.6) determines nitrogen use efficiency via regulation of nitrate transport and assimilation in maize |
| GSE229942 |
Decoding the gene regulatory network of endosperm differentiation in maize [MP3RNA-seq] |
| GSE229946 |
Decoding the gene regulatory network of endosperm differentiation in maize [DAP-seq] |
| GSE232004 |
Natural polymorphisms in ZMET2 encoding a DNA methyltransferase modulate the number of husk layers in maize |
| GSE233927 |
Comparative analysis of nascent transcription among plant species |
| GSE234067 |
The fungal pathogen Ustilago maydis targets the maize corepressor RELK2 to modulate host transcription for tumorigenesis |
| GSE235654 |
responses of maize to the arbuscular fungus rhizophagus irregularis mitigate n deficiency stress-Physiological and molecular responses of maize to the arbuscular mycorrhizla fungus 5AMF) Rhizophagus irregularis mitigate nitrogen deficiency stress. |
| GSE240077 |
Next Generation Sequencing Facilitates Quantitative Analysis of B73 and zmuvr8-1 mutant in low white with or without UVB treat Transcriptomes |
| GSE240962 |
Role of ZmCCT in drought tolerance of maize by transcriptome and DAP-seq experiments |
| GSE252638 |
Assessing chromatin accessibility in maize using ATAC-seq |
| GSE254852 |
Heat-Resistant Inbred Lines Coordinate the Heat Response Genes Expression Remarkably in Maize |
| GSE255222 |
Profiling trancriptome changes that affect vein specification in maize (Zea mays) tml (TOO MANY LATERALS) mutants |
| GSE259213 |
Loss-of-function mutation of Plastid Terminal Oxidase (ZmPTOX) cause zebra leaf and white kernel by affecting plastid development in maize |
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| Supplementary data files not provided |
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