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Platform GPL27958 Query DataSets for GPL27958
Status Public on Apr 30, 2020
Title Agilent-074334 Genotypic_EA933_Japanese_medaka_GXP_4x44K_ArrayDesign (Feature number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Oryzias latipes
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Whole genome GXP of Japanese medaka. Data sourced: NCBI NW_004088048

Arrays of this design have barcodes that begin with 16074334 or 2574334.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Dec 30, 2019
Last update date Apr 30, 2020
Contact name Valerie S Langlois
Organization name Intitut national de la recherche scientifique (INRS)
Department Centre Eau Terre Environnement
Street address 490 rue de la Courrone
City Quebec
State/province QC
ZIP/Postal code G1K9A9
Country Canada
 
Samples (31) GSM4238357, GSM4238358, GSM4238359, GSM4238360, GSM4238361, GSM4238362 
Series (1)
GSE142734 Transcriptional responses in newly-hatched Oryzias latipes associated with developmental malformations following diluted bitumen exposure
Relations
Alternative to GPL28114 (Probe name version)

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 GT_Spec_XM_004078903.1_43781 GT_Spec_XM_004078903.1_43781 FALSE XM_004078903.1 unmapped PREDICTED: Oryzias latipes UAP56-interacting factor-like (LOC101168401), mRNA AAACAATTCAAGTGGCGACAGGCCAACACGAAGCGAAAACCATTCAAGAAGAAAGGCCTT
13 266 146 GT_Spec_XM_004068761.1_58881 GT_Spec_XM_004068761.1_58881 FALSE XM_004068761.1 unmapped PREDICTED: Oryzias latipes POC1 centriolar protein homolog A-like (LOC101161307), mRNA AAGCTTAAAGAGTGTTTGGAGAATCAAGTGGAGATTGGGTTGCATCTCCAGAGAGAGGAG
14 266 144 GT_Xhyb_XM_004076370.1_94291 GT_Xhyb_XM_004076370.1_94291 FALSE XM_004076370.1 unmapped PREDICTED: Oryzias latipes glycogen phosphorylase, muscle form-like, transcript variant 1 (LOC101169133), mRNA ACTGCTTTGTTGAGGAACCATAAAAGCCTTGCGGTGATCTTTGTATATTTACTGATGGTG
15 266 142 GT_Spec_XM_004068408.1_77251 GT_Spec_XM_004068408.1_77251 FALSE XM_004068408.1 unmapped PREDICTED: Oryzias latipes zinc finger FYVE domain-containing protein 9-like (LOC101173779), mRNA TGAATGAATGCTTGGAGAATGCTTTTCACACTGAATGCATTTTAATGGACTGCTCAAAAA
16 266 140 GT_Xhyb_XM_004068111.1_36661 GT_Xhyb_XM_004068111.1_36661 FALSE XM_004068111.1 unmapped PREDICTED: Oryzias latipes elongation factor 1-delta-like, transcript variant 1 (LOC101158844), mRNA GACGGTTTAATAAAACATTCTTGCACTGAAGCTGCTCTTGTTTGACCTTCTCTCTTTTTG
17 266 138 GT_Spec_XM_004075541.1_4821 GT_Spec_XM_004075541.1_4821 FALSE XM_004075541.1 unmapped PREDICTED: Oryzias latipes stAR-related lipid transfer protein 13-like (LOC101155622), mRNA AGCAGCTCTGACAACACTGAACTTCTTTATAAGAAGGCTGTTGATCTGGGACAGACTACC
18 266 136 GT_Spec_XM_004083115.1_71911 GT_Spec_XM_004083115.1_71911 FALSE XM_004083115.1 unmapped PREDICTED: Oryzias latipes transmembrane protein 178B-like (LOC101163374), mRNA CAACCATTACCAAGATCTACCTGCCCCAAGTCCCGGCAAGAGAACGGCACTGTCTGCTAA
19 266 134 GT_Spec_XM_004081390.1_97271 GT_Spec_XM_004081390.1_97271 FALSE XM_004081390.1 unmapped PREDICTED: Oryzias latipes mannosyl-oligosaccharide 1,2-alpha-mannosidase IB-like (LOC101162719), mRNA GTAGAAACAAAGAAAATCTTCCACCACCACATGGACGCAGAGGAACTTTCTGCATCTTGA
20 266 132 GT_Spec_XM_004074483.1_109211 GT_Spec_XM_004074483.1_109211 FALSE XM_004074483.1 unmapped PREDICTED: Oryzias latipes N-lysine methyltransferase SETD8-A-like (LOC101169793), mRNA CAAATGGCAAAGGCTTTTTAGGGAAATCTGCCACAAAGTTCAGTTTTTGAAGGTCACCAC

Total number of rows: 45220

Table truncated, full table size 10674 Kbytes.




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