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Platform GPL2872 Query DataSets for GPL2872
Status Public on Sep 24, 2005
Title Agilent-012694 Whole Mouse Genome G4122A (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4122A
 
Description
Designed to truly represent all known genes in the mouse genome and their resulting transcripts, Agilent's Whole Mouse Genome Oligo microarray is comprised of 41,534 60-mer oligonucleotide probes representing over 41,000 mouse genes and transcripts. Content for this microarray was generated from leading public databases, including RefSeq, RIKEN, NIA, Ensembl, RIKEN, UCSC Goldenpath, and Unigene.

Arrays of this design have barcodes that begin with 16012694 or 2512694.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7042.
 
Submission date Sep 23, 2005
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (957) GSM94015, GSM94016, GSM94017, GSM94018, GSM95643, GSM95644 
Series (84)
GSE4114 Gene expression changes resulting from cdc25a over-expression
GSE4180 CCAT regulated gene expression
GSE4801 Comparative profiling of Tcl1 gene disruptants and Tcl1 stable transformants.
Relations
Alternative to GPL7042

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
1 103 430 BrightCorner BrightCorner pos
2 103 428 NegativeControl NegativeControl neg
3 103 426 NM_007886 A_52_P136751 FALSE NM_007886 NM_007886 13528 Dtnb dystrobrevin, beta Mm.286202 ENSMUST00000101637 NP048989 ref|NM_007886|gb|BC030924|gb|AK043436|ens|ENSMUST00000101637 chr12:3605325-3605384 mm|12qA1.1 Mus musculus dystrobrevin, beta (Dtnb), mRNA [NM_007886] GO:0005509(calcium ion binding)|GO:0005515(protein binding)|GO:0008270(zinc ion binding)|GO:0045202(synapse)|GO:0046872(metal ion binding) GTGTACCCTCCAGAGAACCCCCACATCCTGTTTTTCCTGAGCAACCAGAGAAACCACTTG
4 103 424 AK083162 A_52_P1156465 FALSE AK083162 Mm.65393 TC1484498 gb|AK083162|riken|C630020O05|tc|TC1484498|nap|NAP077247-1 chr18:71023214-71023273 mm|18qE2 Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630020O05 product:unclassifiable, full insert sequence [AK083162] TTCAAATGATAATAGAGTTCAAGATAAATATTTGCACTATTTCCATAGTGAATGCTATGA
5 103 422 NM_178884 A_52_P661982 FALSE NM_178884 NM_178884 98733 AW822216 expressed sequence AW822216 Mm.236454 ENSMUST00000027412 NP804797 ref|NM_178884|ens|ENSMUST00000027412|ens|ENSMUST00000077880|gb|AK048144 chr1:75716817-75716758 mm|1qC4 Mus musculus expressed sequence AW822216 (AW822216), mRNA [NM_178884] GO:0005515(protein binding)|GO:0007155(cell adhesion)|GO:0016020(membrane) GTTTTCTAGTCCCTCAGAAGTCCAAATGGACTCTGCTTTTTACTTCAAAGATGGCTTTGC
6 103 420 AK035412 A_52_P779137 FALSE AK035412 383462 LOC383462 similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) Mm.329817 gb|AK035412|gb|BB112280|riken|9530034N13 chr19:33758045-33758104 mm|19qC1 Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530034N13 product:unclassifiable, full insert sequence. [AK035412] CACTTGTACTATAGAAATCTAGAGTCCTTCCATAGATAACCATGTCAATTTGTAGTCACA
7 103 418 Pro25G Pro25G pos
8 103 416 NM_009260 A_51_P428086 FALSE NM_009260 NM_009260 20742 Spnb2 spectrin beta 2 Mm.123110 ENSMUST00000002017 NP379522 ref|NM_009260|gb|AF017112|gb|AK161119|ens|ENSMUST00000002017 chr11:30059763-30059704 mm|11qA3.3 Mus musculus spectrin beta 2 (Spnb2), transcript variant 2, mRNA [NM_009260] GO:0003779(actin binding)|GO:0005515(protein binding)|GO:0005516(calmodulin binding)|GO:0005634(nucleus)|GO:0005856(cytoskeleton)|GO:0005886(plasma membrane)|GO:0007182(common-partner SMAD protein phosphorylation)|GO:0007184(SMAD protein nuclear translocation)|GO:0016020(membrane)|GO:0051016(barbed-end actin filament capping) CCTAATCTCTATGAACATATCTATCTACCTGTAACCGTAGATAGGTATCTAGATAGATAC
9 103 414 AK084857 A_52_P271894 FALSE AK084857 100383 Bsdc1 BSD domain containing 1 Mm.17918 TC1539649 gb|AK084857|riken|D430003C02|tc|TC1539649|nap|NAP018529-001 chr4:128914551-128914610 mm|4qD2.2 Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430003C02 product:unclassifiable, full insert sequence [AK084857] GACTCACGGTGATGCTTCTAGACTTTTCTTTAGTCATAGAGGCCTTTAAAAATCTGTCAG
10 103 412 NM_025692 A_51_P403693 FALSE NM_025692 NM_025692 66663 Ube1dc1 ubiquitin-activating enzyme E1-domain containing 1 Mm.224935 ENSMUST00000035166 NP477184 ref|NM_025692|ens|ENSMUST00000035166|gb|AK017787|gb|AK151823 chr9:103763721-103763662 mm|9qF1 Mus musculus ubiquitin-activating enzyme E1-domain containing 1 (Ube1dc1), mRNA [NM_025692] GO:0003824(catalytic activity)|GO:0006512(ubiquitin cycle) TATTTTCTCTGCTTATGCTAGTCCCTTGGAATTGAACAATCGGAACTAATAAAACTTAGC
11 103 410 E1A_r60_a20 E1A_r60_a20 pos
12 103 408 A_52_P812372 A_52_P812372 FALSE chr1:083588093-083588034 mm|1qC5 AATAGCCAAGAACAAGAAAGAAGGCACACAAGACCATTTCTATATGCAACTACTATTAAC
13 103 406 AK043329 A_51_P148587 FALSE AK043329 Mm.328086 NP578460 gb|AK043329|riken|A730085K21|tc|NP578460 chrX:95511054-95511113 mm|XqC3 Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730085K21 product:hypothetical protein, full insert sequence. [AK043329] AAATATCCTTGATTTCTATGATCTCTGTACATTTTGTAACGCAAAAACCGTAATTTAAGA
14 103 404 Pro25G Pro25G pos
15 103 402 NM_026312 A_52_P272936 FALSE NM_026312 NM_026312 67683 2610029G23Rik RIKEN cDNA 2610029G23 gene Mm.273405 ENSMUST00000033577 NP812456 ref|NM_026312|gb|AK030507|ens|ENSMUST00000033577|riken|5330423D04 chrX:100411973-100412032 mm|XqD Mus musculus RIKEN cDNA 2610029G23 gene (2610029G23Rik), mRNA [NM_026312] CACTTTCAATGCTTTTATTGGAAAATTCTTAAGAGTATTTCAAACATTTATTAAAACTTT
16 103 400 NM_133241 A_51_P405496 FALSE NM_133241 NM_133241 170790 Mlc1 megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) Mm.32780 ENSMUST00000042594 NP435191 ref|NM_133241|gb|AF449425|gb|AK030396|ens|ENSMUST00000042594 chr15:89038353-89038294 mm|15qE3 Mus musculus megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) (Mlc1), mRNA [NM_133241] GO:0000299(integral to membrane of membrane fraction)|GO:0005216(ion channel activity)|GO:0006810(transport)|GO:0006811(ion transport)|GO:0016020(membrane)|GO:0016021(integral to membrane) CTTGCACTTCTAATTTTAGAGGGATGTTTTGTTTTTAACTGACTCATATAAGTGGGGTCT
17 103 398 NM_025920 A_51_P345110 FALSE NM_025920 NM_025920 67026 Thap4 THAP domain containing 4 Mm.272356 ENSMUST00000027500 NP922090 ref|NM_025920|gb|BC066042|gb|BC063758|ens|ENSMUST00000027500 chr1:93613445-93613386 mm|1qD Mus musculus THAP domain containing 4 (Thap4), mRNA [NM_025920] TGAATTCTGAAGGCAAACTTGAACAGACGGTCTCTATGGCAACCACTACACAGCCAATGA
18 103 396 AK084043 A_51_P244234 FALSE AK084043 NP570856 gb|AK084043|gb|AK148788|riken|7120446K24|riken|D130079A10 chr1:25490903-25490844 mm|1qA5 Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130079A10 product:hypothetical protein, full insert sequence. [AK084043] GTACTCACCATATTTAGCAAGGTCTTTTTCAGACTCTGTATTCTTTCCATTTTCTGTCAG
19 103 394 NM_021611 A_52_P205710 FALSE NM_021611 NM_021611 59310 Mylc2pl myosin light chain 2, precursor lymphocyte-specific Mm.5178 ENSMUST00000005611 NP376903 ref|NM_021611|gb|X65981|gb|AK006422|ens|ENSMUST00000005611 chr5:135669264-135672013 mm|5qG2 Mus musculus myosin light chain 2, precursor lymphocyte-specific (Mylc2pl), mRNA [NM_021611] GO:0005509(calcium ion binding) AAGGAAAAGGCTTTGTCAAGGCTGACTTCATTAAGGAAAAGCTTATGACGCAGGCTGACC
20 103 392 NM_026065 A_51_P410892 FALSE NM_026065 NM_026065 67270 D10Ertd322e DNA segment, Chr 10, ERATO Doi 322, expressed Mm.30008 ENSMUST00000075829 NP586506 ref|NM_026065|ens|ENSMUST00000075829|gb|AK013693|gb|AK002530 chr10:95051234-95041907 mm|10qC2 Mus musculus DNA segment, Chr 10, ERATO Doi 322, expressed (D10Ertd322e), mRNA [NM_026065] GO:0005739(mitochondrion)|GO:0030529(ribonucleoprotein complex) GACAGTATCACAATCGTCGTAAGAAACTGAATCCTCCCAGAGACAGATGACGACTCATGA

Total number of rows: 44290

Table truncated, full table size 21368 Kbytes.






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Supplementary file Size Download File type/resource
GPL2872_old_annotations.txt.gz 6.2 Mb (ftp)(http) TXT

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