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Status
Public on Sep 24, 2005
Title
Agilent-013162 Whole Rat Genome Microarray G4131A (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Rattus norvegicus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4131A
Description
Submission date
Sep 23, 2005
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (416)
GSM132073 , GSM132074 , GSM132075 , GSM132076 , GSM132077 , GSM132078
GSM132079 ,
GSM132080 ,
GSM132081 ,
GSM132082 ,
GSM132083 ,
GSM132084 ,
GSM132085 ,
GSM132086 ,
GSM132087 ,
GSM132088 ,
GSM132089 ,
GSM132090 ,
GSM132091 ,
GSM132092 ,
GSM132093 ,
GSM132094 ,
GSM132095 ,
GSM132096 ,
GSM132097 ,
GSM132098 ,
GSM132099 ,
GSM132100 ,
GSM132101 ,
GSM132102 ,
GSM132103 ,
GSM132104 ,
GSM132105 ,
GSM132106 ,
GSM132107 ,
GSM132108 ,
GSM138232 ,
GSM138233 ,
GSM138234 ,
GSM138235 ,
GSM138236 ,
GSM138237 ,
GSM138238 ,
GSM138239 ,
GSM138240 ,
GSM138251 ,
GSM138252 ,
GSM138253 ,
GSM138254 ,
GSM138255 ,
GSM138256 ,
GSM138257 ,
GSM138258 ,
GSM138259 ,
GSM138260 ,
GSM138261 ,
GSM138262 ,
GSM138263 ,
GSM138264 ,
GSM143172 ,
GSM143311 ,
GSM143312 ,
GSM143313 ,
GSM143314 ,
GSM143315 ,
GSM143316 ,
GSM143317 ,
GSM143318 ,
GSM143319 ,
GSM143320 ,
GSM143321 ,
GSM143322 ,
GSM143323 ,
GSM159376 ,
GSM159377 ,
GSM159378 ,
GSM159381 ,
GSM159383 ,
GSM159384 ,
GSM159385 ,
GSM159386 ,
GSM159387 ,
GSM159388 ,
GSM159389 ,
GSM159390 ,
GSM160703 ,
GSM160704 ,
GSM160729 ,
GSM160732 ,
GSM160733 ,
GSM160737 ,
GSM178493 ,
GSM178494 ,
GSM178495 ,
GSM178496 ,
GSM178497 ,
GSM178535 ,
GSM178537 ,
GSM178538 ,
GSM178540 ,
GSM178541 ,
GSM180913 ,
GSM180914 ,
GSM180915 ,
GSM180916 ,
GSM180917 ,
GSM180918 ,
GSM181578 ,
GSM181579 ,
GSM181580 ,
GSM181581 ,
GSM181582 ,
GSM181583 ,
GSM181584 ,
GSM181585 ,
GSM181586 ,
GSM181587 ,
GSM181588 ,
GSM189806 ,
GSM189807 ,
GSM189808 ,
GSM189809 ,
GSM189810 ,
GSM189811 ,
GSM189812 ,
GSM189813 ,
GSM189814 ,
GSM189815 ,
GSM189816 ,
GSM189817 ,
GSM189818 ,
GSM189819 ,
GSM212995 ,
GSM212996 ,
GSM212997 ,
GSM212998 ,
GSM212999 ,
GSM213000 ,
GSM213001 ,
GSM213002 ,
GSM213003 ,
GSM213004 ,
GSM213005 ,
GSM213006 ,
GSM213007 ,
GSM213008 ,
GSM213009 ,
GSM213010 ,
GSM213011 ,
GSM213012 ,
GSM213013 ,
GSM213014 ,
GSM213015 ,
GSM213016 ,
GSM267779 ,
GSM267780 ,
GSM267781 ,
GSM267782 ,
GSM267783 ,
GSM267784 ,
GSM270904 ,
GSM270905 ,
GSM270906 ,
GSM270907 ,
GSM270908 ,
GSM270909 ,
GSM270910 ,
GSM270911 ,
GSM270912 ,
GSM270913 ,
GSM270914 ,
GSM270915 ,
GSM270916 ,
GSM270917 ,
GSM270918 ,
GSM270919 ,
GSM270920 ,
GSM270921 ,
GSM270922 ,
GSM270923 ,
GSM270924 ,
GSM270925 ,
GSM270926 ,
GSM270927 ,
GSM270928 ,
GSM270929 ,
GSM270930 ,
GSM270931 ,
GSM270932 ,
GSM270933 ,
GSM270934 ,
GSM270935 ,
GSM270936 ,
GSM270937 ,
GSM270938 ,
GSM270939 ,
GSM270940 ,
GSM270941 ,
GSM270942 ,
GSM270943 ,
GSM270944 ,
GSM270945 ,
GSM270946 ,
GSM270947 ,
GSM270948 ,
GSM270949 ,
GSM270950 ,
GSM270951 ,
GSM270952 ,
GSM270953 ,
GSM270954 ,
GSM270955 ,
GSM270956 ,
GSM270957 ,
GSM270958 ,
GSM270959 ,
GSM270960 ,
GSM270961 ,
GSM270962 ,
GSM270963 ,
GSM270964 ,
GSM270965 ,
GSM270966 ,
GSM270967 ,
GSM270968 ,
GSM270969 ,
GSM270970 ,
GSM270971 ,
GSM270972 ,
GSM270973 ,
GSM270974 ,
GSM270975 ,
GSM284782 ,
GSM284783 ,
GSM288936 ,
GSM288942 ,
GSM288949 ,
GSM288958 ,
GSM288981 ,
GSM288982 ,
GSM288983 ,
GSM288984 ,
GSM333961 ,
GSM333963 ,
GSM333964 ,
GSM333966 ,
GSM410708 ,
GSM410709 ,
GSM410710 ,
GSM410711 ,
GSM410712 ,
GSM410713 ,
GSM456332 ,
GSM456333 ,
GSM456334 ,
GSM456335 ,
GSM456336 ,
GSM463348 ,
GSM463990 ,
GSM463991 ,
GSM463992 ,
GSM463993 ,
GSM463994 ,
GSM464091 ,
GSM464092 ,
GSM464197 ,
GSM464198 ,
GSM464199 ,
GSM464200 ,
GSM479747 ,
GSM479804 ,
GSM479806 ,
GSM479807 ,
GSM479808 ,
GSM479823 ,
GSM479824 ,
GSM479825 ,
GSM479836 ,
GSM479837 ,
GSM479838 ,
GSM479863 ,
GSM479864 ,
GSM479865 ,
GSM479866 ,
GSM515650 ,
GSM515651 ,
GSM515652 ,
GSM515653 ,
GSM515654 ,
GSM515655 ,
GSM515656 ,
GSM515657 ,
GSM515658 ,
GSM515659 ,
GSM515660 ,
GSM515661 ,
GSM602208 ,
GSM602209 ,
GSM602210 ,
GSM602211 ,
GSM602212 ,
GSM602213 ,
GSM602214 ,
GSM602215 ,
GSM602216 ,
GSM602217 ,
GSM602218 ,
GSM602219 ,
GSM602220 ,
GSM602221 ,
GSM602222 ,
GSM602223 ,
GSM602224 ,
GSM602225 ,
GSM602226 ,
GSM602227 ,
GSM602228 ,
GSM602229 ,
GSM602230 ,
GSM602231 ,
GSM602232 ,
GSM602233 ,
GSM602234 ,
GSM602235 ,
GSM602236 ,
GSM602237 ,
GSM602238 ,
GSM602239 ,
GSM602240 ,
GSM602241 ,
GSM602242 ,
GSM602243 ,
GSM602244 ,
GSM602245 ,
GSM602246 ,
GSM602247 ,
GSM647168 ,
GSM647169 ,
GSM647170 ,
GSM647171 ,
GSM647172 ,
GSM647173 ,
GSM720771 ,
GSM720772 ,
GSM720773 ,
GSM720774 ,
GSM720775 ,
GSM720776 ,
GSM720777 ,
GSM720778 ,
GSM720779 ,
GSM720780 ,
GSM720781 ,
GSM720782 ,
GSM720783 ,
GSM720784 ,
GSM720785 ,
GSM720786 ,
GSM720787 ,
GSM720788 ,
GSM720789 ,
GSM720790 ,
GSM720791 ,
GSM720792 ,
GSM720793 ,
GSM720794 ,
GSM720795 ,
GSM720796 ,
GSM720797 ,
GSM720798 ,
GSM852749 ,
GSM852750 ,
GSM852751 ,
GSM852752 ,
GSM852753 ,
GSM852754 ,
GSM852755 ,
GSM852756 ,
GSM852757 ,
GSM852758 ,
GSM852759 ,
GSM852760 ,
GSM852761 ,
GSM852762 ,
GSM852763 ,
GSM852764 ,
GSM852765 ,
GSM852766 ,
GSM852767 ,
GSM852768 ,
GSM852769 ,
GSM852770 ,
GSM852771 ,
GSM852772 ,
GSM852773 ,
GSM852774 ,
GSM852775 ,
GSM852776 ,
GSM852777 ,
GSM1124019 ,
GSM1124020 ,
GSM1124021 ,
GSM1124022 ,
GSM1124023 ,
GSM1124024 ,
GSM1124025 ,
GSM1124026 ,
GSM1124027 ,
GSM1124028 ,
GSM1124029 ,
GSM1124030 ,
GSM1124031 ,
GSM1124032 ,
GSM1124033 ,
GSM1124034 ,
GSM1124035 Series (28)
GSE5350 MicroArray Quality Control (MAQC) Project
GSE5943 Colonic gene expression upon dietary treatment
GSE6204 Rat gastric ECL cell transcriptomes: Change of gene expression during 24 hrs fasting
GSE6917 Effects of Phenylethyl Isothiocyanate on N-Nitrosomethylbenzylamine-induced Cytotoxicity in Rat Esophagus
GSE7397 Adult cardiomyocytes treated with fractalkine (CX3CL1)
GSE7472 Colonic gene expression upon Salmonella infection and dietary treatment
GSE7496 Transcription profiling of rat colonic mucosa at different time points following Salmonella infection
GSE7826 Gene expression affected by TNFa and SB203580
GSE8587 Gene expression changes in cecum mucosa upon dietary treatment
GSE10623 Effects of Black Raspberry diet on N-Nitrosomethylbenzylamine-altered gene expression in Rat Esophagus
GSE10720 Expression Profiling of Severed Rat Medial Collateral Ligament Following Injury
GSE11267 Positive emotion-specific changes in gene expression profile in hypothalamus of the tickled rats
GSE11468 Molecular Profiling of Small and Large Retinal Ganglion Cells
GSE13220 Transcriptomics of Rat Striata 16 h after Gamma Knife Surgery: Distinct Bilateral Effects in the Un-irradiated Striatum
GSE16359 Rat hindlimb arteries: Shunt versus Control
GSE18266 Leukocyte accumulation in graft blood vessels during self-limiting acute rejection of rat kidneys Immunobiology
GSE18687 Ventral striatal responses to reduced food intake in healthy animals and rats bearing small tumors
GSE18688 Hypothalamic responses to reduced food intake in healthy animals and rats bearing small tumors
GSE18733 Ventral striatal and hypothalamic responses to reduced food intake in healthy animals and rats bearing small tumors
GSE19313 Comparative gene expression analysis of the rat gastrointestinal tract epithelia
GSE20528 Gene expression in response to axotomy in organotypical slices co-cultures
GSE24440 Sprouting transcriptome in cortical neurons: young
GSE24441 Sprouting transcriptome in cortical neurons: aged
GSE24442 Sprouting transcriptome in cortical neurons
GSE26354 Positive emotion-specific changes in gene expression profile in brain and peripheral tissues of the tickled rats
GSE29095 Transcriptional Profiles Induced by the Aryl Hydrocarbon Receptor Agonists 2,3,7,8-Tetrachlorodibenzo-p-dioxin, 2,3,7,8-Tetrachlorodibenzofuran and 2,3,4,7,8-Pentachlorodibenzofuran in Primary Rat Hepatocytes
GSE34651 Mechanisms of Pancreatic Acinar Cell Neoplasia Associated with Gene Expression Changes caused by Dietary Exposure of Rats to Ammonium perfluorooctanoate, Wyeth 14,643 or Diethylhexyl phthalate
GSE46126 Transcriptome characterization of venous endothelium during the formation of neointimal hyperplasia and stenosis in a rat arteriovenous fistula model for kidney dialysis
Relations Alternative to
GPL7289
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE 1
103
430
BrightCorner
BrightCorner
pos
2
103
428
NegativeControl
NegativeControl
neg
3
103
426
NM_001014131
A_43_P20320
FALSE
NM_001014131
NM_001014131 360867 RGD1309708
similar to RIKEN cDNA 4930455F23
Rn.40586
ENSRNOT00000003844
TC569446
ref|NM_001014131|gb|CB545656|gb|BC078972|ens|ENSRNOT00000003844
chr13:80058433-80058492
rn|13q22
Rattus norvegicus similar to RIKEN cDNA 4930455F23 (RGD1309708), mRNA [NM_001014131]
AGGGAGCGGAAACTGAAGTTCAAAGACAAATTAGTTGATCTGGAAGTCCCACCTTTAGAA
4
103
424
BF287586
A_44_P681613
FALSE
BF287586 Rn.25415
TC544729
gb|BF287586|tc|TC544729
chr7:116411935-116411994
rn|7q34
BF287586 EST452177 Rat Gene Index, normalized rat, Rattus norvegicus cDNA Rattus norvegicus cDNA clone RGIGH95 5' sequence, mRNA sequence [BF287586]
GAATACCAAGAGCGTGGTCTTGAGAACACGGTGGTTAATGAACTTGTCTCTCTGATGGAT
5
103
422
XM_231287
A_44_P1057903
FALSE
XM_231287
XM_231287 311968 Mll5
myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)
ENSRNOT00000014652
TC517863
ref|XM_231287|ref|XM_001059647|ref|XM_001059700|ens|ENSRNOT00000014652
chr4:7042929-7042870
rn|4q11
PREDICTED: Rattus norvegicus myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila) (Mll5), mRNA [XM_231287]
ACAGATTCCAATTCACAGAGCACAGGTGCCACCAACATTTCAAAACAATTACCACGGTTC
6
103
420
AW143071
A_44_P493665
FALSE
AW143071 Rn.163666
TC535939
gb|AW143071|tc|TC535939
chr10:14509691-14509632
rn|10q12
AW143071 EST293366 Normalized rat ovary, Bento Soares Rattus sp. cDNA clone RGIBC71 5' end, mRNA sequence [AW143071]
AGGTCCTCATGAAGTTGGAATCCGCATCCAGCCTTCGTAAGCCCAGCAAGGTGAAAGACT
7
103
418
Pro25G
Pro25G
pos
8
103
416
TC551035
A_44_P755377
FALSE
TC551035
tc|TC551035
chr11:83455588-83455529
rn|11q23
GAATTATTCAGTTGCTTTTAAAGCATTAAATCTTGGCCTTTGTTTAGGGAGAGATAGAGC
9
103
414
XM_215581
A_43_P16082
FALSE
XM_215581
XM_215581 295091 LOC295091
putative pheromone receptor V2R2B
Rn.107047
ENSRNOT00000031015
NP066837
ref|XM_215581|ref|XM_001064105|gb|AF053990|ens|ENSRNOT00000031015
chr2:153940215-153940156
rn|2q31
PREDICTED: Rattus norvegicus putative pheromone receptor V2R2B (LOC295091), mRNA [XM_215581]
GO:0016503(pheromone receptor activity)
TCTTTGAATGCAATGAAGGTTCTATAGAGTTTCTTTGCTCTATATTTGCCTTTGATGTCC
10
103
412
BF557076
A_44_P622113
FALSE
BF557076 Rn.175183
TC518665
gb|BF557076|tc|TC518665
chr10:39016865-39016924
rn|10q22
UI-R-E1-gn-b-05-0-UI.r1 UI-R-E1 Rattus norvegicus cDNA clone UI-R-E1-gn-b-05-0-UI 5', mRNA sequence [BF557076]
TGTTTTGTGGTAGAATCACCATGTAAGTTACGGTCTAAACCCGTACTTTTGATGTTGATG
11
103
410
E1A_r60_a20
E1A_r60_a20
pos
12
103
408
NM_001004077
A_42_P568930
FALSE
NM_001004077
NM_001004077 289481 Gk-rs2
glucokinase activity, related sequence 2
Rn.108510
ENSRNOT00000044244
ref|NM_001004077|gb|XM_223215|gb|BC079449|ens|ENSRNOT00000044244
chr14:13548908-13548967
rn|14p22
Rattus norvegicus glucokinase activity, related sequence 2 (Gk-rs2), mRNA [NM_001004077]
GO:0004370(glycerol kinase activity)|GO:0005524(ATP binding)|GO:0005737(cytoplasm)|GO:0005741(mitochondrial outer membrane)|GO:0005975(carbohydrate metabolism)|GO:0006071(glycerol metabolism)|GO:0016740(transferase activity)
TGCTGTTATTCGCTGGCTAAGAGACAATTTCGAACTTATAACGTCCTCGGGGGAAGTTGA
13
103
406
NA
NA
ignore
14
103
404
Pro25G
Pro25G
pos
15
103
402
AI059089
A_44_P643501
FALSE
AI059089 Rn.21035
gb|AI059089
chr3:118287795-118287736
rn|3q36
UI-R-C1-lr-b-04-0-UI.s1 UI-R-C1 Rattus norvegicus cDNA clone UI-R-C1-lr-b-04-0-UI 3', mRNA sequence [AI059089]
TTAGATAGCTTGTACAGCCATGAGTAGAGTCCATGCGTACTGATGTATTAGATAGCTCGT
16
103
400
BQ201045
A_44_P447066
FALSE
BQ201045 Rn.106944
gb|BQ201045|gb|BI276252
chr20:45470575-45470516
rn|20q12
BQ201045 UI-R-EB1-clp-b-21-0-UI.s1 UI-R-EB1 Rattus norvegicus cDNA clone UI-R-EB1-clp-b-21-0-UI 3', mRNA sequence [BQ201045]
ACCTCCAGCTTCATGCCTTCGGTCTCCAGTTCCCTCATAGCAGGCTCAATCTCGTTTAGT
17
103
398
NM_053565
A_44_P548126
FALSE
NM_053565
NM_053565 89829 Socs3
suppressor of cytokine signaling 3
Rn.127801
ENSRNOT00000003940
TC570026
ref|NM_053565|gb|AF075383|ens|ENSRNOT00000003940|tc|TC570026
chr10:107973266-107973207
rn|10q32.3
Rattus norvegicus suppressor of cytokine signaling 3 (Socs3), mRNA [NM_053565]
GO:0001558(regulation of cell growth)|GO:0001932(regulation of protein amino acid phosphorylation)|GO:0004860(protein kinase inhibitor activity)|GO:0005515(protein binding)|GO:0006916(anti-apoptosis)|GO:0007165(signal transduction)|GO:0007243(protein kinase cascade)|GO:0007259(JAK-STAT cascade)|GO:0009968(negative regulation of signal transduction)|GO:0046627(negative regulation of insulin receptor signaling pathway)
CAACGTGGCTACCCTCCAGCATCTTTGTCGGAAGACTGTCAACGGTCACCTGGACTCCTA
18
103
396
NM_001004218
A_42_P547027
FALSE
NM_001004218
NM_001004218 292485 Fuca2
fucosidase, alpha-L- 2, plasma
Rn.47769
ENSRNOT00000020946
TC570892
ref|NM_001004218|gb|XM_214788|gb|BC078933|ens|ENSRNOT00000020946
chr1:8297165-8297224
rn|1p13
Rattus norvegicus fucosidase, alpha-L- 2, plasma (Fuca2), mRNA [NM_001004218]
GO:0004560(alpha-L-fucosidase activity)|GO:0005737(cytoplasm)|GO:0005975(carbohydrate metabolism)|GO:0006027(glycosaminoglycan catabolism)|GO:0016798(hydrolase activity, acting on glycosyl bonds)
CTGGCTGAAAGTCAACGGGGAAGCTATTTATGAAACACATACTTGGAGGTCTCAGAACGA
19
103
394
NM_021696
A_44_P104985
FALSE
NM_021696
NM_021696 60325 Serpinb2
serine (or cysteine) proteinase inhibitor, clade B, member 2
Rn.42912
ENSRNOT00000003409
TC573249
ref|NM_021696|gb|X64563|ens|ENSRNOT00000003409|tc|TC573249
chr13:13615345-13615404
rn|13p13
Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade B, member 2 (Serpinb2), mRNA [NM_021696]
GO:0006916(anti-apoptosis)|GO:0008243(plasminogen activator activity)|GO:0042060(wound healing)
GTCTGAGAGCAATGACCTTTTTCTTTCTGAAGTGTTCCATCAAGCCACAGTAGATGTGAA
20
103
392
BE098844
A_44_P552160
FALSE
BE098844 Rn.161296
gb|BE098844|gb|AI638994
chr11:86737007-86737066
rn|11q23
BE098844 UI-R-BJ1-ate-e-06-0-UI.s1 UI-R-BJ1 Rattus norvegicus cDNA clone UI-R-BJ1-ate-e-06-0-UI 3', mRNA sequence [BE098844]
AATGATTATATGACAAAGACACTTACTATGTATTTGAGTCTTCATATTTCAAAATACACA
44290 17227 Kbytes .Supplementary file Size Download File type/resource GPL2877_old_annotations.txt.gz
5.3 Mb
(ftp) (http) TXT
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