GEO help: Mouse over screen elements for information.
Status
Public on Dec 09, 2005
Title
GRASP salmonid array, 16k v. 1.0, March 2004
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organisms
Oncorhynchus mykiss ; Salmo salar Manufacturer
Genomic Research on Atlantic Salmon Project
Manufacture protocol
details on the manufacture and testing of the 16k v. 1.0 array may be found in:http://web.uvic.ca/cbr/grasp/
Description
16k salmonid cDNA microarray from GRASP
Submission date
Sep 27, 2005
Last update date
Dec 09, 2005
Contact name
Krista Nichols
E-mail(s)
kmnichol@purdue.edu Phone
765-496-6848
Organization name
Purdue University
Department
Biological Sciences
Street address
915 W State Street
City
West Lafayette
State/province
IN
ZIP/Postal code
47992
Country
USA
Samples (48)
GSM76936 , GSM77073 , GSM77074 , GSM77075 , GSM77076 , GSM77077
GSM77078 ,
GSM77079 ,
GSM77080 ,
GSM77081 ,
GSM107846 ,
GSM108051 ,
GSM108052 ,
GSM108054 ,
GSM108055 ,
GSM108180 ,
GSM108181 ,
GSM108182 ,
GSM108183 ,
GSM113893 ,
GSM114858 ,
GSM114859 ,
GSM114860 ,
GSM114861 ,
GSM114862 ,
GSM114863 ,
GSM114864 ,
GSM114865 ,
GSM114866 ,
GSM114867 ,
GSM114868 ,
GSM159448 ,
GSM159450 ,
GSM159452 ,
GSM159453 ,
GSM159455 ,
GSM159457 ,
GSM159458 ,
GSM159460 ,
GSM159462 ,
GSM206171 ,
GSM206220 ,
GSM206221 ,
GSM206222 ,
GSM206223 ,
GSM206224 ,
GSM206225 ,
GSM206226 Series (6)
GSE3522 Gene Expression Profiling Following DNA Vaccination of Rainbow Trout against Infectious Hematopoietic Necrosis Virus
GSE4787 Microarray gene expression analysis in atrophying rainbow trout muscle: An unique non-mammalian muscle degradation model
GSE4790 The effects of chronic immune stimulation on muscle growth in rainbow trout
GSE5091 Cell line stimulated with recombinant cytokines interleukin-1b and interferon gamma.
GSE6924 Salmonid host response to Hematopoietic Necrosis virus: cellular receptors, viral control and novel pathways of defence
GSE8631 Discovery of genes associated with whirling disease infection and resistance in rainbow trout using expression profiling
Data table header descriptions ID GRASP_metarow Imagene metarow designation from GRASP gene ID file
GRASP_metacolumn Imagene metacolumn designation from GRASP gene ID file
GRASP_row Imagene row designation from GRASP gene ID file
GRASP_column Imagene column designation from GRASP gene ID file
FEATEX_ROW Feature Extracter row designation
FEATEX_COL Feature Extracter column designation
GB_ACC GenBank Accession No.
ORGANISM BLAST_HIT_GRASP significant BLAST hits from GRASP annotation at release (March 2004; 16k v. 1.0)
SPOT_ID SEQUENCE
Data table ID GRASP_metarow GRASP_metacolumn GRASP_row GRASP_column FEATEX_ROW FEATEX_COL GB_ACC ORGANISM BLAST_HIT_GRASP SPOT_ID SEQUENCE 1
1
1
1
1
1
1
U17997 U17997 GFP
2
1
1
1
2
1
2
Blank Well
3
1
1
1
3
1
3
Blank Well
4
1
1
1
4
1
4
Blank Well
5
1
1
1
5
1
5
Blank Well
6
1
1
1
6
1
6
Blank Well
7
1
1
1
7
1
7
Blank Well
8
1
1
1
8
1
8
Blank Well
9
1
1
1
9
1
9
Blank Well
10
1
1
1
10
1
10
CA054869 ssal
ATATATTTATTCCCTTGGCAAGTCATTTTTAACTGTTGGGCACATTTTTTACTTGTTTGTGTGTGTGTGGTCTCCCACAGTATAAATGGTAAAAAGTCTATAAAAAAATGACTTCAAATGTCAAACGACATCTTCCAAGTGCTAATAGAGTACCTTCAACTGAGGGCCAATGCAGTCAAAAACGTGAATTACCTGTGTTTTAAATTTCCACACTATGAGGTTGGAATAATACTGTGAAATTATGATAATGTCCTTTACGTATAAGAGCAGTTTGAAAAGACCGTCTGAAATTTCAGCCTTTTTATGTAGGATGGAGTTTTGGGCTTCCATGGTGACATCACCATGTGGTAAATTAGTTAATAGACCAATAAGAAAGAGTTCCGAACCTCTCTGCCAATAACAGTTCATTTTCTGTTTTTGCCTAAAGCACTCTCAGACAGTCCTAGCAAATGTCTTGATTAAGAAATTGCTCTTTGATAAAAAAAGCTATTTGTTTCCTTTTCACTATTTTAATTGAAGTACCTTACTCTGTTTTCATTGTTACTCATAAATGATTTGATATTTAGATAAAAATGGCTGCATTGGTCCTTTAAATATCCTTCACAAACAGTGTCACACAAGAGACATATAGGCACAAACACAGAGTGCATCAAGGCATAAACACAGACCATGTAATACTCCCCTCCTGGTGTTGTGCAATTTGGACTGTGTTGTTAGTCTCTCTGATGACAGTGGTTGAACCATTTCGTTGCCCTATAC
11
1
1
1
11
1
11
CB490276 omyk
[P] [BAA89698] (AB030070) cyclin B2 [Oryzias latipes]
CTTGGCCCGAACAGACTGCTGGGTCTCAAGGCGCTGCAGATATCCATAGATATCCTTTATATATTCAGAGCACAGTTGTGGCAGGTCTGAATCCCCTTCATCAATGTCTTCTACAGCAAGCAGAGCTTCTGAGAACGCCTGGCACAATTCCTCTTCCTTCATGGACACGTTAGCATACACTTCAGGCTGAGGAACTTTAGGCCAAACAGCTGCGGGCTGGTCTTGTTGGTTCATAGATTGTTTGGTTGAGGCCTTGGCAGGAACGGTCTTCTTGAACGGCACCGCTTTGCAAGCATTGGGAAAGTTGGACAGCTCTCCAAGCACAGCCCTTCCTGCTCCAGCTACGTTTGCTTTTCCCATTAGTGTTGGGTTGTCTGCGTTCCTTAACGCAGAACCAACTTCTAATGACATCGTC
12
1
1
1
12
1
12
CA769480 ssal
[P] [NP_003783] endothelial differentiation-related factor 1 isoform alpha; multiprotein bridging factor 1 [Homo sapiens]
GCTACAGCAGTAGGACACGTCCATATCGTAGTGACACAATATGCAAAGTGTGAAAAGGCTGCAATCAAGCACGTTCAAAATGGATAAAAATAACATTTTCAGAAACAATTTTTATGTTAAGGTAGAGTCGATGCACATGGCCACGGTAAAATTCACCTTGTCTGTTTCAACCATCCCCCCAAAAAGTTAAAGAAAAAATGTCATTTCAGAGCACTTTTGGTTAGCAAGTTTTGCAATGATTCAATCGTTCATTCATTGATTATAAGAAGTAATTTGTGATGATTTGTCAGTATATGCAGCTTGCAATGTGGTGGATCACCAGGTCCTGTAGCAGGACACAGGTGGAGATCAGCCCAGGTAGAGGAGGGTGATAGGGGAGAGAGGGGGGTTTGGAGAGTTAAGGGAGGCAGGGTCATAGCGGGAGTTGAAAGGTGGGGATAGAGATGGGGGACATGGGGAAGGGGGGGCTGATTTCGAGGCTTTGTCCTCATTTCTTCTTGGGTTTTGCTTCCAGAGGCAGTCCAATATCTTTCCCACGCAGCTTCAAACCGATTGCTCTCTCAATTTTGCCCATGACCTGATTGTTGGGAATTGCTTTTCCACACTCATAGTCTGCGATGACCTG
13
1
1
1
13
1
13
CA063502 ssal
AAGTAGGCAAGTGAATGGTCGAGGACAGGCAAAAGGTCAAAACCAGTTCAGAGTCCAGGAGGCACAGAGTGGCAGGCAGGCTTGAGGTCAAGGCAGGCAGAATGGTCAGGCAGGCGGGTACAGAGTCCAGAATAGGCAAGGGTCAAAACCGGGAGGATTAGAAAAAGGAGAATAGCAAAGGCAGGAGTACGGGAAAAAACGCTGGTTGACGTGGAACATACAACACGAACTGGCACAGAGAGACAGGAAACACAGGGATAAATACACTGGGGAAAACAAGCGACACCTGGAGGGGGTGGAGACAATAACAAGATCAGGTGAAACAGATCAGGGTGTGACACTGTATACAAATGTATTTTTAAAATATTTATTAGATCCCAGAACAGCAGTCTTGACATTGTAATTTGTGCTTACCTATGGCTAACCTTGTGGTTTGATCCCCGACCAAGTCATACCAAAGGCTTTAAAAATGAGACCTGATGCGTCTCTACTTGGCTCTCAGCATCAAGGAGATGCGCTAGACTTGTGTCCTGTCTAGAGGGTGTACTTGTAAATCATGCTGCTTTTCGCTACAGAAGCAGGAGATAGGCTCCTGCTTCTATGAGCCTTTCTGGCTTGTACAAGGTTACTTACTATGGCTTATTACAAACCTTCCATATACATACACTGTTATGTAAGAGCTGGCATAAACTGATTGATCTTCATGATCCCAAGTCTTAAAACAGTATTTTATGTTT
14
1
1
1
14
1
14
CB512130 ssal
CAAATACTATTTGTTTTCAAGGACAATTTTATGATTGAATAATATAATCTACGAGTTGAGTTGCAATGTAGTTTACTGGGTGTCATAACATCAATAAAAATAGTAATATTGTCCAAAGTTGCTCAACATTCTCCACTTATGATGACCCTCGAATCACACTCAAATATAGCCAAATACGTGTTATGAATAAAATACATTTAGCGTAACCTTCTTTGATCACAAGAAACACAGAATGGTGACAACCACTCAGTTCTAAAATACATGATTTTATGCCTTGCCTTTTTTGTTACAGACCAACTTAATATGCTAATGATAACAAGTGACTCAGAGCACGTGAGAAACATATTATACTGTATTAGTCCACTACATCAGGTCAAATTGGAATTATGAAGGGTAATAATGTCAAACTCCCAACACTGAACGGCAAAGACAGAAATGAAACATTACAATAACAATGTATTTGAAAAAAATCCTAACAGAAAAACAATAGTAAGATAAATGAAGGTGTGATATTCTACACATCATACAATACATATAGCCATTGAAAATTGTTTTGGCTGAAGTTGTAGAAAAGTAGATTACAAAAAAAAAAACCTTCCTTGAAAAAAATGTATAATTCCTCTTCCAAGTAAGAATACACACAATAGTAAATAAATGTAAATGGCTTGTTGGCCATCTGCCCAAACCTGAAGTCATACAGTTTGGTGGCATGACTA
15
1
1
1
15
1
15
CA044918 ssal
GAAAACCTCAGCATTCACTGTGGTGAGAAGATCACTATGGACCATGAGTTGATTTTCAATAAGATTGTGAGGAGCAATCGGGGGGGTTGGTGTTGTGAGAATAACCTCCTCTTTGCTTGGGTGCTAAAAGAGATGGGTTATAATCCAGTAACACTGGGTTCAAGAGTCTACAACAACACCATCAACCAGTTCGGCCCAAAAGACTCTCACCTCATCAACAAGGTAGTTATTGATGGGACTGCTTACATTGCAGATGTGAGCTTTGGGGCATCCTCCCAAATATGGTACCCTCTTGAGCTCGTCTCCGGGAAGGACCAGCCACAATCCCCTGGTGTCTTCCGTCTCATACAAGATGGAGACCTGTGGACCCTGGAGAAGACTGGTCGAAAGCCTCTGGTTCTCAATGAGGCCTTTACCAACTCACCTCTAGTAGACAAGAGCCCAACCAAGAAGATCTACGGCTTCACCCTGGTTCCCCGTGGGGTTGATAATTTCCTAGAGACTTCCCACTGCCTTCAGACAGATCCAAAGTCTCTATTCACCAACAAGTCCATCTGCTCACTGCAGACTGCTACAGGATTCAGAGCTCTAATTGGCTGGACCTTCAGTGAGGTCACCTACAACAACCAGGAGGGTTTTGATGTTTTGGATATGAAAGACATATCTGATGATGATGTTGATAAAGTGCTGAAGGAAATGTTTAATGTG
16
1
1
1
16
1
16
CB512117 ssal
ACTTTATTCAGGATGGAAAAAAAGTAGATTAAGTCAGTTAAGTAGCACTGCTCGGACTTCCAAAAAGCAACACCAGACATGTACTGTACATACAATCCAAGGAGCAGCCTTGTGTGGATGAAAACCGTTCACTGTGCTTCCTGTTTCTGGCACACATGAGAGACGAGACCATCTAAACAAAAGAAAGTGCCAAGGGGGGAAGAACATGGAATCACATTGGTACAAATAAGCCATGTAGTGAAGTTAAGGACTTTTCAAATGTACAGAAATTATTAATTAATTTAGAAAACAAATTACCTATGGTATTGATTATGGTTACAACTTGAACAAGGTCATTCTAGTCTAGTGTGATTTCAGAATGCTTGGATGAGCCATGGTTTAATTGAGTCCAATTAACCCACAATCTTGCTATCCAATGAGCCAGTGGCTCCCACTTCTCAGACTGGCTTACATGCCACATAATACAGCACCCCCAGGGTGGGTAAACAAAGGTTACATGGGGTTGGACTCACTGGAGTATAAGCGTGATCAGATGGGTTCATTAGATTAAAGATTACCATTGCCTTTGGCAGCATTCCCAAACCCAAGTCTAAAAGTACCCCTCATGATAACTGGACACCAATCCATCTCTGTTCATTTCCCTACAAACTGCAAAACAAAGGTGATGTCCAATAAGTGGTTAACATTCACCTTANAACAGACTCAGCATATGACGTTGCCACGAACAGAAAATATGCAACGCAAGATTACACTCCTCAAATGTANGCACATGTGCTCTTCATGCTGCTACAACATGATCACTGCTGGACAAA
17
1
1
1
17
1
17
CB505689 ssal
TTTTTAAGAGTCAACAAACTTTTATTGAAATAAATACAAAAGCAACAAATGAGAACGTGAGAAACTCAAAAGCAACAAATATCTGCAACATTTCTCATCTTTTTACATATGGTCTATTGTAGAAAAAAAACAATAGATTTCTCATTTGTGACAATAAAAATTATAGAACAAAATAGAAACACTATTCACATTTAACGGTTGTCAAAAACTACAAAACAAGCAAAGTGACCAAACCTAAAATTGGTATTAGAATGTCAAAGTTTGGTCTCAGAATCATCAATAGTGAAGTACACTCCATTTACTTTTTAAATAACAAATTATATATTAAAGCATGGGTTTTAAAGGAATGTGACAGTTCATTGACCAAGACTGTCTGAGTGTGGATCACAGGGCCAGATAATACACCATCTAGATTAATCCCATAAACCCCCCCCCCATTGGCACCATCCCAATAAACAAACAAGAGCAGAATACCTTTAACAATTATTTTTTTTAACACAATAACAGAATTGTACAATCTTATGCTTTAAAAAAACATGACCACATCACATTAGCTGATTTTAAATAAATTGACAGATCATTCCTAGAATTATAATTTCAGAGTACGCAACCAATCAATTCATATTTAGAGTCACTGCTAGAGCAGCTCAAGACATTGGCAGCAATTGACAATTAGTGTCTGTCAAATGGACGTACATACATTTGAAAAGTACTTAGAACATTTCATATATAAATATTGATTGTATAGTATTTGTCACATATAATTATCC
18
1
1
1
18
1
18
CA050278 ssal
[P] [NP_112632] lysophospholipase II [Rattus norvegicus]
GGTTTCCTTTATTTAATTGGGTTTTTATAACGTCAGATAATTGAATCAGCACAAGTACGGGCACCCAGGAATGACGGGGCACCCATGGGTAGCTGTGGCGCGACCACAACCCCACCAGCGGCCGTGAACCTGTTGGGAACAGCATACACAGCAGCATGGCACCAGAGTCACTCCAGACGGCACCAGACCCTCGGGGCCTGAGGACCAGAACCACAGGCTGCTGAACCTGCCATCTCCTCAGCCTGGGTCAGACTCGGACACTGGGTGGCATCTAGGAACAGGAGGAGCCCCCCTGCTCACTTACTGCTTCACTCACTGACACACACAGCAATGGAGGGAAACAGGAGTGGAGGTTCAGAGAAAGAAAGAGGGGATAATGGTGGGTTGGGTAAGATAAAAGAATCCCAGGGGTTGTACTGTGTTTATCAGTGATTCTCCCTCAAAGCGAAGACTTGTTTGCACACTTCAGTGTGTTCAAAACTGTGTGTTTATAAAAAGGTGTGTCCAGTATGATGTGCGTTGGATTTTTATGGAATGAGGCATGTATTATGATTATGATGTTATGTGAAAGTAAGTGTTACTGTGTTTGTGTGTGTGTGTGGAGGGGGCGGTGCTCATGGCTGTTTCCTGTGAGAGAATAGCAGGTCAGAGGTGAGAGGTCAGCGTCTA
19
1
1
1
19
1
19
U17997 U17997 GFP
20
1
2
1
1
1
20
U17997 U17997 GFP
17328 11266 Kbytes .Supplementary data files not provided
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