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Platform GPL2913 Query DataSets for GPL2913
Status Public on Oct 06, 2005
Title Center for Functional Analysis of Human Genome Human KUGI 24K (liver cancer)
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer The Center for Functional Analysis of Human Genome
Manufacture protocol cDNA microarrays were fabricated in our core facility using a robotic arrayer (PixSYS 5500, Cartesian; Ann Arbor, MI). The 24K microarray contains 24,288 genes from KUGI unigene library (http://21cgenome.kribb.re.kr/html/2004_new/genome_php/cdna/cdna_list.htm). All the clones were verified by sequencing in our facility. The cDNA inserts were amplified by PCR, and after purification, spotted onto silylated glass slides (CSS-100; Telechem, Sunnyvale, CA). Each microarray slide contained control genes to normalize the effect of different fluorescent dyes.
 
 
Submission date Oct 04, 2005
Last update date Oct 06, 2005
Contact name Heun-Sik Lee
E-mail(s) hslee00@kribb.re.kr
Phone 82-42-879-8121
Fax 82-42-879-8119
Organization name Korea Reaearch Institute of Bioscience and Biotechnology
Lab Human genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejeon
ZIP/Postal code 305-333
Country South Korea
 
Samples (42) GSM81024, GSM81025, GSM81026, GSM81027, GSM81028, GSM81029 
Series (2)
GSE3536 Hepatoma cell lines vs. Universal control 3
GSE4003 Microarray analysis of LRRC3B stable cell derived xenograft tumors

Data table header descriptions
ID
KU_ID Korean UniGene CLONE ID
GB_ACC GenBank Accession number
UNIGENE
Gene_Title Gene title
SPOT_ID

Data table
ID KU_ID GB_ACC UNIGENE Gene_Title SPOT_ID
1 KU000005 NM_001101 426930 actin, beta
2 KU000015 BC004319 169476 glyceraldehyde-3-phosphate dehydrogenase
3 Negative Control -- CONTROL
4 Negative Control -- CONTROL
5 Negative Control -- CONTROL
6 All DNA Mix 0.5 -- CONTROL
7 All DNA Mix 2 -- CONTROL
8 All DNA Mix 8 -- CONTROL
9 All DNA Mix 32 -- CONTROL
10 All DNA Mix 128 -- CONTROL
11 All DNA Mix 512 -- CONTROL
12 KU001923 BC009238 75318 tubulin, alpha 1 (testis specific)
13 KU005769 NM_000188 118625 hexokinase 1
14 KU000002 NM_005566 2795 lactate dehydrogenase A
15 KU010642 NM_007208 320961 mitochondrial ribosomal protein L3
16 KU000135 NM_000992 430207 ribosomal protein L29
17 KU000627 M31523 371282 transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)
18 Negative Control -- CONTROL
19 Negative Control -- CONTROL
20 Negative Control -- CONTROL

Total number of rows: 24288

Table truncated, full table size 1651 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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