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| Status |
Public on Oct 15, 2021 |
| Title |
Agilent-086360 Shbio Human (4*180K) array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
See manufacturer's web site (www.agilent.com).
|
| |
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| |
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| Submission date |
Oct 14, 2021 |
| Last update date |
Oct 24, 2021 |
| Contact name |
Zifan Yue |
| E-mail(s) |
y459016247@126.com
|
| Phone |
15821673019
|
| Organization name |
Shanghai Changzheng Hospital
|
| Department |
Ophthalmology
|
| Street address |
No. 415 Fengyang Road, Hangpu District
|
| City |
Shanghai |
| ZIP/Postal code |
200001 |
| Country |
China |
| |
|
| Samples (30)
|
GSM5627753, GSM5627754, GSM5627755, GSM5627756, GSM5627757, GSM5627758
GSM5718285, GSM5718286, GSM5718287, GSM5718288, GSM5718289, GSM5718290, GSM5718291, GSM5718292, GSM5718293, GSM5718294, GSM5718295, GSM5718296, GSM5718297, GSM5718298, GSM5718299, GSM5718300, GSM7771673, GSM7771674, GSM7771675, GSM7771676, GSM7771677, GSM7771678, GSM7771679, GSM7771680
|
| Series (3) |
| GSE185952 |
For lncRNA, circRNA and mRNA sequencing of thyroid-associated ophthalmopathy patients and normal people |
| GSE190215 |
circRNA, lncRNA and mRNA profiles of umbilical cord blood exosomes from preterm newborns showing bronchopulmonary |
| GSE242834 |
Gene expression profiling and the effect of HDAC9 in cisplatin resistance of esophageal squamous cell carcinoma |
|
| Data table header descriptions |
| ID |
|
| ProbeName |
|
| Type |
|
| GB_ACC |
RefSeq accession number |
| TargetID |
|
| GeneSymbol |
|
| Description |
|
| Chromosome |
|
| Start |
|
| End |
|
| Strand |
|
| best_transcript |
|
| hostgene |
|
| SEQUENCE |
Sequence of probe |
| SPOT_ID |
|
| Data table |
| ID |
ProbeName |
Type |
GB_ACC |
TargetID |
GeneSymbol |
Description |
Chromosome |
Start |
End |
Strand |
best_transcript |
hostgene |
SEQUENCE |
SPOT_ID |
| A_22_P00001056 |
A_22_P00001056 |
mRNA |
|
ENST00000497397 |
RP11-731F5.2 |
novel transcript [ENST00000497397] |
chr14 |
106114261 |
106115394 |
- |
- |
- |
TAGGAAGACAAATAGCAGCTGACGGCGTGGGCAAGTCTGCCCACATGTACCGCGCCAAAA |
ENST00000497397 |
| CUST_25733_PI448380708 |
CUST_25733_PI448380708 |
circRNA |
|
hsa_circ_0026905 |
- |
- |
chr12 |
56571805 |
56581090 |
- |
NM_003075 |
SMARCC2 |
GCAAGAACAAGTCCAAGACTCCAGAGATTATATACAAGCTGAACCACCCACCAACAAGTC |
hsa_circ_0026905 |
| CUST_38665_PI448380708 |
CUST_38665_PI448380708 |
circRNA |
|
hsa_circ_0040454 |
- |
- |
chr16 |
74372636 |
74382913 |
- |
NR_026950 |
LOC283922 |
AGTACTTTGTTCCCCCTGACAAGGCTATTGTGGATGCTGATGGAAGAATTTATATTCGGA |
hsa_circ_0040454 |
| A_23_P409516 |
A_23_P409516 |
mRNA |
NM_138333 |
NM_138333 |
FAM122A |
Homo sapiens family with sequence similarity 122A (FAM122A), mRNA [NM_138333] |
chr9 |
71394981 |
71400482 |
+ |
- |
- |
TTCCTTTGGATACCCTTGAATTCAGTGTAGTAATATTTTCAGACGTTTCCCCAATAAGTG |
|
| CUST_76915_PI448380708 |
CUST_76915_PI448380708 |
circRNA |
|
hsa_circ_0080265 |
- |
- |
chr7 |
56120114 |
56125796 |
+ |
NM_001762 |
CCT6A |
TAACGTGTCATTAGAGTATGAGAAAACGCTCGTTTCTGGCGCTGGAGACATCAAACTTAC |
hsa_circ_0080265 |
| CUST_33809_PI448380708 |
CUST_33809_PI448380708 |
circRNA |
|
hsa_circ_0035387 |
- |
- |
chr15 |
55964642 |
56032882 |
- |
NM_173814 |
PRTG |
ATACTCTCAGTGGCTTAGGAGTGTGGTGCTTTAGCGAACTGTCTTTTGTAAAAGAACCAC |
hsa_circ_0035387 |
| A_23_P34018 |
A_23_P34018 |
mRNA |
NM_001000 |
NM_001000 |
RPL39 |
Homo sapiens ribosomal protein L39 (RPL39), mRNA [NM_001000] |
chrX |
118920467 |
118925593 |
- |
- |
- |
TGGCACACATATTTATGCTGTCTGAAGGTCACGATCATGTTACCATATCAAGCTGAAAAT |
|
| A_24_P188941 |
A_24_P188941 |
mRNA |
NM_002520 |
NM_002520 |
NPM1 |
Homo sapiens nucleophosmin 1 (NPM1), transcript variant 1, mRNA [NM_002520] |
chr5 |
170814708 |
170837888 |
+ |
- |
- |
AATGTTATGATAGGACATAGTAGTAGCGGTGGTCAGACATGGAAATGGTGGGGAGACAAA |
|
| CUST_20427_PI448301858 |
CUST_20427_PI448301858 |
lncRNA |
|
ENST00000623409 |
CR381653.1 |
novel transcript |
chr21 |
9325059 |
9327777 |
+ |
- |
- |
TTCCAGTGTCCTCTGGGTGTTTCCAAGAGCAACAAGAAATGAATAAATCTCTGGTGAGTT |
ENST00000623409 |
| CUST_18337_PI448380708 |
CUST_18337_PI448380708 |
circRNA |
|
hsa_circ_0019231 |
- |
- |
chr10 |
96018556 |
96022489 |
+ |
NM_016341 |
PLCE1 |
GGAGAACACTGCACTTATGATGAAATCCTCAGCATCATCCAGTGCTTGGAGCAGTAGTAG |
hsa_circ_0019231 |
| CUST_1104_PI448301858 |
CUST_1104_PI448301858 |
lncRNA |
|
ENST00000539163 |
HNF1A-AS1 |
HNF1A antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:26785] |
chr12 |
120969838 |
120972292 |
- |
- |
- |
TAAAAACTTCTGCATATGAAGTCACCCATTCCATTTGACTCTTTAGCCCTCATCCTGGCA |
ENST00000539163 |
| CUST_15263_PI448380708 |
CUST_15263_PI448380708 |
circRNA |
|
hsa_circ_0016019 |
- |
- |
chr1 |
202711518 |
202718267 |
- |
NM_006618 |
KDM5B |
CACAGCTGTATGCTCTTCCATGTGTCCTCAGTCAGACACCATTACTAAAGCTGCCATTAG |
hsa_circ_0016019 |
| CUST_42174_PI448380708 |
CUST_42174_PI448380708 |
circRNA |
|
hsa_circ_0044097 |
- |
- |
chr17 |
42929776 |
42932372 |
- |
NM_004247 |
EFTUD2 |
TTTCTCTGTCTGTCTTCCACCACTGGCAGGAACAAGATCACCATGATTGCTGAGCCTCTT |
hsa_circ_0044097 |
| A_33_P3279969 |
A_33_P3279969 |
mRNA |
NM_181775 |
NM_181775 |
PLXNA4 |
Homo sapiens plexin A4 (PLXNA4), transcript variant 2, mRNA [NM_181775] |
chr7 |
132169521 |
132333447 |
- |
- |
- |
TGCATCTTCATCTTGAAGCAGATAAATGACCGCATTAAGGAGCGGCTGCAGTCTTGTTAC |
|
| CUST_105349_PI448380708 |
CUST_105349_PI448380708 |
circRNA |
|
hsa_circ_0140289 |
- |
- |
chrX |
41029247 |
41076596 |
+ |
NM_001039590 |
USP9X |
CTCTGCCAGTGATTGAGCATTCCGCGGTAAACACCTCTCTTTTGTAGTTCGATTTCCAAA |
hsa_circ_0140289 |
| CUST_16722_PI448380708 |
CUST_16722_PI448380708 |
circRNA |
|
hsa_circ_0017537 |
- |
- |
chr10 |
5014392 |
5020158 |
+ |
NM_001353 |
AKR1C1 |
TGCTCTCTCCTAAAGATTCTTCACCTAGTGGAATGTCATCCTTACTTCAACCAGAGAAAA |
hsa_circ_0017537 |
| CUST_22908_PI448380708 |
CUST_22908_PI448380708 |
circRNA |
|
hsa_circ_0023992 |
- |
- |
chr11 |
89943703 |
89947343 |
- |
NM_012124 |
CHORDC1 |
GATTGGGACCTCATGTAAGAATGGAGGGTGTTCAAAGGGCTGTACAAAAGGTAGACATAA |
hsa_circ_0023992 |
| CUST_24735_PI448380708 |
CUST_24735_PI448380708 |
circRNA |
|
hsa_circ_0025878 |
- |
- |
chr12 |
40034756 |
40041779 |
+ |
NM_001031748 |
C12orf40 |
TACTCCTCAGAAACTTGCATATGAAAAAAAGCAGAATGACCAGGTCCAGGGTTCTGATCA |
hsa_circ_0025878 |
| A_33_P3317431 |
A_33_P3317431 |
mRNA |
|
ENST00000447700 |
RPL7P59 |
ribosomal protein L7 pseudogene 59 [Source:HGNC Symbol;Acc:HGNC:49215] [ENST00000447700] |
chr7 |
144737092 |
144738034 |
- |
- |
- |
GGAACCTGTGTGAAGATCAACAAGGCTTCAATTTACATGCTGAGGATTGTAGAGCCATAG |
ENST00000447700 |
| CUST_65766_PI448380708 |
CUST_65766_PI448380708 |
circRNA |
|
hsa_circ_0068608 |
- |
- |
chr3 |
195781950 |
195789810 |
- |
NM_003234 |
TFRC |
ATCTGAACCAATACAGAGCAGACATAAAGATGGGTTTCAGCCCAGCAGAAGCATTATCTT |
hsa_circ_0068608 |
Total number of rows: 173079
Table truncated, full table size 36055 Kbytes.
| Supplementary data files not provided |
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