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Status
Public on Dec 01, 2005
Title
[Chicken] Affymetrix Chicken Genome Array
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Gallus gallus Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html
Web link
http://www.affymetrix.com/support/technical/byproduct.affx?product=chicken http://www.affymetrix.com/analysis/index.affx Submission date
Nov 30, 2005
Last update date
Jun 03, 2009
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (1630)
GSM85520 , GSM85521 , GSM85526 , GSM85527 , GSM115434 , GSM115435
GSM115436 ,
GSM115437 ,
GSM115438 ,
GSM151367 ,
GSM151368 ,
GSM151441 ,
GSM151442 ,
GSM151443 ,
GSM151444 ,
GSM151445 ,
GSM151446 ,
GSM151447 ,
GSM151449 ,
GSM151450 ,
GSM151451 ,
GSM151452 ,
GSM151453 ,
GSM151454 ,
GSM151455 ,
GSM151456 ,
GSM151457 ,
GSM151458 ,
GSM151459 ,
GSM151460 ,
GSM151461 ,
GSM151462 ,
GSM151463 ,
GSM157808 ,
GSM157809 ,
GSM157810 ,
GSM157811 ,
GSM157812 ,
GSM157813 ,
GSM157814 ,
GSM157815 ,
GSM157816 ,
GSM157817 ,
GSM157818 ,
GSM157819 ,
GSM157820 ,
GSM157821 ,
GSM157822 ,
GSM157823 ,
GSM157824 ,
GSM157825 ,
GSM157826 ,
GSM157827 ,
GSM157878 ,
GSM157879 ,
GSM157880 ,
GSM157881 ,
GSM157882 ,
GSM157883 ,
GSM157884 ,
GSM157885 ,
GSM157886 ,
GSM158353 ,
GSM158354 ,
GSM158356 ,
GSM158358 ,
GSM158366 ,
GSM158368 ,
GSM172144 ,
GSM172155 ,
GSM172463 ,
GSM172464 ,
GSM172465 ,
GSM172466 ,
GSM172467 ,
GSM172468 ,
GSM172469 ,
GSM172470 ,
GSM172471 ,
GSM172472 ,
GSM172473 ,
GSM172474 ,
GSM189423 ,
GSM189424 ,
GSM189425 ,
GSM189426 ,
GSM189427 ,
GSM189428 ,
GSM197816 ,
GSM197817 ,
GSM197818 ,
GSM197819 ,
GSM197820 ,
GSM197821 ,
GSM197822 ,
GSM197823 ,
GSM197824 ,
GSM197825 ,
GSM197929 ,
GSM197930 ,
GSM197931 ,
GSM197932 ,
GSM197933 ,
GSM197934 ,
GSM197936 ,
GSM197937 ,
GSM197938 ,
GSM197939 ,
GSM197940 ,
GSM197941 ,
GSM197942 ,
GSM197943 ,
GSM197944 ,
GSM197945 ,
GSM197946 ,
GSM197947 ,
GSM197948 ,
GSM197949 ,
GSM197950 ,
GSM197951 ,
GSM197952 ,
GSM197953 ,
GSM197954 ,
GSM197955 ,
GSM197956 ,
GSM197957 ,
GSM197958 ,
GSM197959 ,
GSM197960 ,
GSM197961 ,
GSM197962 ,
GSM197963 ,
GSM197964 ,
GSM197965 ,
GSM197966 ,
GSM197967 ,
GSM197968 ,
GSM197969 ,
GSM197970 ,
GSM197971 ,
GSM197972 ,
GSM197973 ,
GSM197974 ,
GSM197975 ,
GSM197976 ,
GSM197977 ,
GSM197981 ,
GSM197982 ,
GSM197983 ,
GSM197984 ,
GSM197985 ,
GSM197986 ,
GSM197987 ,
GSM197988 ,
GSM197989 ,
GSM197990 ,
GSM197991 ,
GSM197992 ,
GSM197993 ,
GSM197994 ,
GSM197995 ,
GSM197996 ,
GSM197997 ,
GSM197998 ,
GSM197999 ,
GSM198000 ,
GSM198001 ,
GSM198002 ,
GSM198003 ,
GSM198004 ,
GSM210532 ,
GSM210533 ,
GSM210534 ,
GSM210535 ,
GSM210536 ,
GSM210537 ,
GSM210698 ,
GSM210700 ,
GSM210702 ,
GSM210703 ,
GSM210705 ,
GSM210706 ,
GSM210708 ,
GSM210709 ,
GSM210711 ,
GSM210712 ,
GSM210714 ,
GSM210715 ,
GSM210716 ,
GSM210717 ,
GSM210718 ,
GSM210719 ,
GSM210720 ,
GSM210721 ,
GSM210722 ,
GSM210723 ,
GSM210724 ,
GSM210725 ,
GSM210726 ,
GSM210727 ,
GSM210728 ,
GSM210729 ,
GSM210730 ,
GSM210731 ,
GSM215459 ,
GSM215460 ,
GSM215461 ,
GSM215462 ,
GSM215463 ,
GSM215464 ,
GSM215465 ,
GSM215466 ,
GSM215467 ,
GSM215468 ,
GSM215469 ,
GSM215470 ,
GSM215471 ,
GSM215472 ,
GSM215473 ,
GSM215474 ,
GSM215475 ,
GSM215476 ,
GSM215477 ,
GSM215478 ,
GSM215479 ,
GSM234861 ,
GSM234862 ,
GSM234863 ,
GSM234864 ,
GSM234865 ,
GSM234866 ,
GSM234867 ,
GSM234868 ,
GSM234869 ,
GSM234870 ,
GSM234871 ,
GSM234872 ,
GSM234873 ,
GSM234874 ,
GSM234875 ,
GSM234876 ,
GSM234877 ,
GSM234878 ,
GSM234879 ,
GSM234880 ,
GSM234881 ,
GSM234882 ,
GSM234883 ,
GSM234884 ,
GSM234885 ,
GSM234886 ,
GSM234887 ,
GSM234888 ,
GSM234889 ,
GSM234890 ,
GSM249501 ,
GSM249502 ,
GSM249504 ,
GSM249507 ,
GSM249508 ,
GSM249509 ,
GSM249510 ,
GSM249511 ,
GSM249512 ,
GSM258164 ,
GSM258165 ,
GSM258166 ,
GSM258167 ,
GSM258168 ,
GSM258169 ,
GSM258170 ,
GSM258171 ,
GSM264617 ,
GSM264754 ,
GSM264759 ,
GSM264812 ,
GSM264851 ,
GSM264860 ,
GSM265060 ,
GSM265073 ,
GSM265369 ,
GSM265371 ,
GSM265372 ,
GSM265374 ,
GSM266118 ,
GSM266120 ,
GSM266122 ,
GSM266123 ,
GSM266125 ,
GSM266126 ,
GSM266312 ,
GSM266313 ,
GSM266314 ,
GSM266315 ,
GSM266316 ,
GSM266704 ,
GSM288503 ,
GSM288504 ,
GSM288505 ,
GSM288506 ,
GSM288507 ,
GSM288508 ,
GSM288509 ,
GSM288510 ,
GSM293159 ,
GSM293160 ,
GSM293161 ,
GSM293162 ,
GSM293163 ,
GSM293164 ,
GSM293165 ,
GSM293166 ,
GSM293167 ,
GSM293168 ,
GSM293169 ,
GSM293170 ,
GSM293171 ,
GSM293172 ,
GSM293173 ,
GSM293174 ,
GSM293175 ,
GSM293176 ,
GSM293177 ,
GSM293178 ,
GSM293179 ,
GSM293180 ,
GSM293181 ,
GSM293182 ,
GSM293183 ,
GSM293184 ,
GSM293185 ,
GSM293186 ,
GSM294982 ,
GSM294983 ,
GSM294984 ,
GSM294985 ,
GSM294986 ,
GSM294987 ,
GSM294988 ,
GSM294989 ,
GSM294990 ,
GSM294991 ,
GSM294992 ,
GSM294993 ,
GSM308025 ,
GSM308027 ,
GSM308045 ,
GSM308046 ,
GSM308066 ,
GSM308083 ,
GSM318333 ,
GSM318334 ,
GSM318335 ,
GSM318336 ,
GSM318337 ,
GSM318338 ,
GSM318339 ,
GSM318340 ,
GSM318341 ,
GSM318342 ,
GSM318343 ,
GSM318344 ,
GSM341496 ,
GSM341497 ,
GSM341498 ,
GSM341499 ,
GSM351483 ,
GSM351751 ,
GSM351752 ,
GSM351753 ,
GSM361909 ,
GSM361910 ,
GSM361911 ,
GSM361912 ,
GSM361913 ,
GSM361914 ,
GSM361915 ,
GSM361916 ,
GSM361917 ,
GSM361918 ,
GSM361919 ,
GSM361920 ,
GSM361921 ,
GSM361922 ,
GSM361923 ,
GSM361924 ,
GSM361925 ,
GSM361926 ,
GSM361927 ,
GSM361928 ,
GSM361929 ,
GSM361930 ,
GSM361931 ,
GSM361932 ,
GSM361933 ,
GSM362338 ,
GSM362341 ,
GSM364860 ,
GSM364862 ,
GSM364863 ,
GSM364864 ,
GSM378241 ,
GSM378242 ,
GSM378243 ,
GSM378244 ,
GSM378245 ,
GSM378246 ,
GSM378247 ,
GSM378248 ,
GSM378249 ,
GSM378375 ,
GSM378376 ,
GSM378377 ,
GSM378378 ,
GSM378379 ,
GSM378380 ,
GSM385945 ,
GSM385946 ,
GSM385947 ,
GSM385948 ,
GSM385949 ,
GSM385950 ,
GSM385951 ,
GSM385952 ,
GSM386831 ,
GSM386832 ,
GSM386833 ,
GSM386834 ,
GSM386835 ,
GSM386836 ,
GSM386837 ,
GSM386838 ,
GSM386839 ,
GSM386840 ,
GSM386841 ,
GSM386842 ,
GSM386843 ,
GSM386844 ,
GSM386845 ,
GSM386846 ,
GSM386847 ,
GSM386848 ,
GSM386849 ,
GSM386850 ,
GSM386851 ,
GSM386852 ,
GSM386853 ,
GSM386854 ,
GSM397850 ,
GSM397851 ,
GSM397852 ,
GSM397853 ,
GSM397854 ,
GSM397855 ,
GSM397856 ,
GSM397857 ,
GSM397858 ,
GSM402240 ,
GSM402352 ,
GSM402353 ,
GSM402354 ,
GSM402355 ,
GSM402356 ,
GSM402357 ,
GSM402358 ,
GSM402359 ,
GSM402360 ,
GSM402361 ,
GSM402362 ,
GSM402363 ,
GSM402364 ,
GSM402365 ,
GSM402366 ,
GSM402367 ,
GSM402368 ,
GSM402369 ,
GSM402521 ,
GSM402523 ,
GSM402525 ,
GSM442574 ,
GSM442575 ,
GSM442576 ,
GSM442577 ,
GSM442578 ,
GSM442579 ,
GSM442580 ,
GSM443526 ,
GSM443527 ,
GSM443528 ,
GSM443529 ,
GSM443530 ,
GSM443531 ,
GSM443532 ,
GSM443533 ,
GSM443534 ,
GSM460097 ,
GSM460098 ,
GSM460099 ,
GSM460100 ,
GSM460101 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (136)
GSE3702 Early gene expression responses to a Salmonella infection in the chicken intestine
GSE5114 Gene expression in Histone H1 variant deletion chicken DT40 mutant cell
GSE6543 Chick myopia
GSE6843 Male and female embryonic chicken hearts (arnol-affy-chick-445639)
GSE6844 Male and female embryonic chicken brains (arnol-affy-chick-345142)
GSE6856 Male and female embryonic chicken livers (arnol-affy-chick-445002)
GSE6868 Homocysteine induced alterations in gene expression in neural crest cells
GSE7176 Develomental Time Course of the Retinal Pigment Epithelial Transcriptome
GSE7805 affy_fertility_chicken_exp169
GSE8010 Expression data from chicken adipose tissue at 7-week of age
GSE8016 Comparative genomic hybridization between chicken and Japanese quail
GSE8017 Global gene expression during the photoinduction process.
GSE8018 Gene expression in the quail MBH under short and long day conditions.
GSE8483 Gene expression in Histone H1 null mutant cells
GSE8495 Expression profiling of the solute carrier gene family in the chicken intestine
GSE8693 Sex-biased gene expression in 18 day embryonic chicken heart, brain, and gonad
GSE9251 Systematic identification of genes involved in chicken muscle development
GSE9884 Expression Profiling of Circulating Red Blood Cells and Non Red Blood Cells in the Chicken Embryo (E4 and E6)
GSE10231 Gene expression oocyte quality in the hen
GSE10538 Regulation of the early embryonic RPE (retinal pigment epithelium) transcriptome by the neural retina
GSE11439 Retinal gene expression in chicks during imposed myopic defocus
GSE11597 Expression data from chicken B cell lymphoma (DT40) cell lines.
GSE11636 Correlating global gene regulation to morphogenesis and maturation in the chick extra-embryonic vascular system
GSE12268 Sexually dimorphic gene expression in the chick brain at stage 29
GSE12675 Hypoxia effect on embryonic hearts of Tibetan Chicken, Dwarf Recessive White Chicken and Shouguang Chicken
GSE14013 Sex biased gene expression in 17 weeks old chicken (ovary, testes)
GSE14220 The nuclear actin-related protein Arp6 contributes to the radial positioning of chromosome territories.
GSE14489 Gene profiling of v-Src transformed primary chicken cells
GSE14509 Transcriptome analysis of pancreatic tumor cell invasion and angiogenesis in the PDAC-CAM model
GSE14587 Genes induced by VEGF on the chick CAM after 24h
GSE15141 EGR1 regulates metastatic potential of v-src transformed chicken sarcoma cell lines
GSE15143 An Antifibrotic Regulatory Network Governed by the Transcription Factor EGR4
GSE15382 Gene expression profile of embryonic retinas expressing c-hairy1, Delta-1, or Wnt2b
GSE15413 Gene expression profiles for different tissues obtained from newly hatched (day 0) and 7 day-old broiler chickens
GSE15830 Identification of potential transcripts involved in chicken PGCs development
GSE16064 Sex-dimorphic gene expression and ineffective dosage compensation of Z-linked genes in gastrulating chicken embryos
GSE16081 Gallus gallus bursal FAE and IFE
GSE17725 Gene expression profile in the pectoralis muscle of penguin before and after acclimatisation to marine life
GSE17758 Microarray analysis of changes in gene expression within the amacrine cell layer of chicks following optical defocus
GSE18477 Normal expression of facial prominences in stage 18 chicken embros
GSE18506 Expression data from chicken bursal cells treated with stem cell antigen 2
GSE18568 Chondrocyte Gene Expression in Proliferative and Hypertrophic Chondrocytes of Chick
GSE18778 Comparison of gene expression between wild-type and PTIP deficient chicken DT40 B cells
GSE19698 BMP-mediated inhibition of FGF signaling promotes cardiomyocyte differentiation of anterior heart field progenitors
GSE21679 Gene signatures in wound tissue as evidenced by molecular profiling in the chicken embryo model
GSE21706 Chicken ovary cancer versus normal
GSE21915 Time-of-day-dependent light-induction of gene expression in the chicken pineal gland
GSE22222 Expression profile of Chicken Early Embryonic Endodermal Tissues
GSE22230 Expression Profile of Chicken Primitive Streak (HH4) Tissues
GSE22592 Expression data from cultured chicken primordial germ cells (PGCs)
GSE23389 Subtractive cloning of differentially expressed genes in chick heart/hemangioblast precursor cells
GSE23592 Gene Expression Profiling of Three Tissues in Chicken with Heat Stress by Affymetrix Microarray
GSE23881 Kinetic gene expression profiles of chicken macrophage HD11 cells in response to endotoxin from Salmonella typhimurium-798
GSE24641 Image defocus and altered retinal gene expression in chicks
GSE25151 Gene expression in broiler livers upon supplementation with selenized yeast
GSE25185 Influence of Deoxynivalenol-contaminated diet on the liver gene expression of chicken.
GSE25588 Liver-expressed antimicrobial peptide-2 is downregulated in Eimeria maxima-infected chickens
GSE27958 Expression profile of Chicken Early Yolksac Endodermal Tissues
GSE28388 [E-MTAB-366] Transcription profiling by array of chicken embryos at 15 different stages
GSE28391 Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis
GSE28634 Molecular analysis of the TGF-beta controlled gene expression program in chicken embryo dermal myofibroblasts
GSE29562 Strain-dependent host responses in chicken embryonic fibroblasts infected with Toxoplasma gondii [ME49, CEP, and Mock]
GSE29563 Host responses in chicken embryonic fibroblasts infected with different strains of Toxoplasma gondii [F1 progeny]
GSE29564 ROP16-dependent host transcriptional responses in chicken embryonic fibroblasts infected with T. gondii [RH, ROP16-KO]
GSE29565 Expression data from chicken embryonic fibroblasts infected with Toxoplasma gondii
GSE31476 Host cell gene expression in Influenza A/WSN/33 (H1N1) infected CEF cells at 2, 4, 6, and 8 hours post infection
GSE31499 Host cell gene expression in Influenza A/WSN/33 (H1N1) infected CEF cells at 10 hour post infection
GSE31501 Host cell gene expression in Influenza A/duck/Malaysia/F119/3/1997 (H5N3) infected CEF cells at 10 hour post infection
GSE31505 Host cell gene expression in Influenza A/Duck/Malaysia/01 (H9N2) infected CEF cells at 2, 4, 6, 8 and 10 hours post infection
GSE31506 Host cell gene expression in Influenza A/duck/Malaysia/F118/08/2004 (H5N2) infected CEF cells at 2, 4, 6, 8, and 10 hours post infection
GSE31507 Host cell gene expression in Influenza A/duck/Malaysia/F59/04/1998 (H5N2) infected CEF cells at 10 hour post infection
GSE31508 Host cell gene expression in Influenza A/duck/Malaysia/F189/07/2004 (H5N2) infected CEF cells at 10 hour post infection
GSE31524 Host cells infected by various types of viruses
GSE32272 Expression data from chick cochlea and utricle
GSE32494 Targeting the hemangioblast with a novel cell type-specific enhancer
GSE33389 Expression data from low- and high-pathogenicity avian influenza-infected chicken and duck cells
GSE34687 Cross-species meta-analysis of regulatory networks of the Pax5 transcription factor
GSE35413 INK4A expression in leukemic cells transformed by the v-Myb oncoprotein depends on the integrity of the v-Myb leucine zipper region
GSE35430 Expression data from H2A.Z-1 and H2A.Z-2 double KO cells
GSE35581 Transcriptomic profiling of chicken adipose tissue in response to insulin neutralization and fasting
GSE37070 Microarray analysis of normal and abnormal chick myocardial development
GSE37782 Expression data from chick embryos overexpressing NEUROG2 or NEUROG2AQ in the neural tube
GSE38107 HoxA13 gain-of-function in chicken embryo PSM progenitors.
GSE38168 Identification of transcripts predominantly expressed in cultured chicken primordial germ cells and embryonic fibroblasts.
GSE38381 Chicken neural crest and neural plate
GSE39346 The oncoprotein v-Myb activates transcription of Gremlin 2 during differentiation of the chicken neural crest to melanoblasts
GSE39450 Coordinated activities of EZH2 and EZH1 are essential for neurogenesis
GSE39602 Comparative analysis of Gallus gallus cecal epithelia following Eimeria tenella infection
GSE39824 Expression data from Chicken duodenum
GSE40100 Expression data of spleens from chickens infected with different Newcastle Disease Viruses
GSE40802 Gene expression data of two different strains of laying hens from a small group housing system
GSE42516 Downregulation of the HOPX gene decreases metastatic activity in a chicken sarcoma cell line model and identifies genes associated with metastasis
GSE42845 Chick Otic Placode Induction Arrays
GSE44394 Molecular and metabolic profiles suggest that increased lipid catabolism in adipose tissue contributes to leanness in domestic chickens
GSE47191 Integrated analyses of genome-wide DNA occupancy and expression profiling identify key genes and pathways involved in cellular transformation by Marek's disease oncoprotein, Meq
GSE48116 Neuropeptides:developmental signals in placode progenitor formation
GSE48359 Transcriptomic analysis of midbrain and individual hindbrain rhombomeres in the chick embryo
GSE48453 Transcriptional Profiling of Meq-dependent Genes in Marek’s Disease Resistant and Susceptible Inbred Chicken Lines
GSE48454 Genes and pathways involved in cellular transformation by Marek's disease oncoprotein Meq
GSE50880 Expression data from preadipocytes isolated from laying hen
GSE51330 Expression data from chicken preadipocytes
GSE52227 Discovery of genes involved in facial midline specification
GSE53930 Expression data of lungs from chickens infected with different H5N1 Avian Influenza Viruses [12 hours post infection]
GSE53931 Expression data of lungs from chickens infected with different H5N1 Avian Influenza Viruses [24 hours post infection]
GSE53932 Expression data of lungs from chickens infected with different H5N1 Avian Influenza Viruses
GSE59002 Time course and dose response analysis of gene expression in BCR or CD40-stimulated DT40 B cell
GSE59920 Macrophages from newly hatched chicks [set2]
GSE59921 Macrophages from male and female chickens
GSE60754 Expression data from different chicken tissues at 7-week of age
GSE62882 Expression data from embryonic chicken feather and scale skins
GSE69684 Comparison of Transient + articular cartilage (TC+AC) over pure transient cartilage (TC) from both E12 and E14 chicken tibia
GSE69862 Gene profiling of v-Src transformed primary chicken embryo fibroblasts (CEFs) under the condition of AP-1 repression
GSE71117 Chicken gut DM asymmetry
GSE71888 Transcriptional Profiles in Bursal B-Lymphoid DT40 Cells Infected with Very Virulent Infectious Bursal Disease Virus
GSE75798 expression profiles in the chicken PSM differentiation at Stage 12HH chicken embryo
GSE76794 Gene profiling of primary chicken embryo fibroblasts (CEFs) grown under the conditions of contact-inhibition, serum starvation, or both in comparison to normal cycling cells
GSE79963 Expression data from control and gentamicin-treated chick basilar papilla
GSE81023 Cell interactions, signals and transcriptional hierarchy governing placode progenitor induction
GSE81461 Gene Expression from hair cells and supporting cells in chick utricle
GSE81717 Delamination of neural crest cells requires transient and reversible Wnt inhibition mediated by Dact1/2
GSE81994 Expression data from preadipocytes isolated from laying hen II
GSE82344 Gene expression profile in the pectoralis muscle of penguin juveniles artificially acclimated to marine life
GSE87486 Expression data from chick embryo olfactory placodes during initial period of GnRH neuronal production
GSE87663 Expression data from single embryonic chick retinal cells
GSE89325 Pathway analysis identifies altered mitochondrial metabolism, neurotransmission, structural pathways and complement cascade in retina/RPE/choroid in chick model of form-deprivation myopia
GSE94622 Lysolecithin as feed additive enhances collagen expression and villus length in the jejunum of broiler chickens
GSE106787 Identification of SoxC-regulated genes during neurogenesis in the developing spinal cord [chicken]
GSE106788 Identification of SoxC-regulated genes during neurogenesis in the developing spinal cord
GSE109451 Transcriptional Profiling of the Chicken Liver during the Embryo-to-Hatchling Metabolic Transition
GSE114476 Mesenchymal-Epithelial Transition Regulates Initiation of Pluripotency Exit before Gastrulation
GSE114661 Genome wide analysis of chick limb bud tissue treated with FGF2 for 24hrs (microarray)
GSE114663 Genome wide analysis of chick limb bud tissue treated with FGF2 for 3 hrs
GSE134668 Gene expression data from maturing oocyte of chickens
GSE139859 Molecular events controlling cessation of trunk neural crest migration and onset of differentiation
GSE184105 Expression data from ad libitum or restricted fed 16-week old broiler breeder hens
GSE234518 Expression data of Tubb3+ cells from E4 chicken neural tube
Relations Alternative to
GPL10234 (Alternative CDF)
Data table header descriptions ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description GenBank description associated with the representative public identifier. Blank for some probe sets.
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Data table ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function AB112960.CDS1.S1_at AB112960.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian leukosis virus AB112960.CDS1 /GEN=env /DB_XREF=GI:32188035 /SEG=AB112960:+383,6898 /DEF=Avian leukosis virus genomic RNA, complete genome. envelope protein /REP_ORG=Avian leukosis virus
AF004856.CDS1.S1_s_at AF004856.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian orthoreovirus AF004856.CDS1 /DB_XREF=GI:2213895 /SEG=AF004856:+31,1134 /DEF=Avian reovirus strain 1733 segment S3, sigma B protein gene, complete cds. sigma B protein /REP_ORG=Avian orthoreovirus
AF004857.CDS1.S1_s_at AF004857.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian orthoreovirus AF004857.CDS1 /DB_XREF=GI:2213897 /SEG=AF004857:+25,321 /DEF=Avian reovirus strain 1733 segment S1, 10 kDa protein, 17 kDa protein and sigma C protein genes, complete cds. 10 kDa protein /REP_ORG=Avian orthoreovirus
AF004857.CDS2.S1_s_at AF004857.CDS2
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian orthoreovirus AF004857.CDS2 /DB_XREF=GI:2213898 /SEG=AF004857:+293,733 /DEF=Avian reovirus strain 1733 segment S1, 10 kDa protein, 17 kDa protein and sigma C protein genes, complete cds. 17 kDa protein /REP_ORG=Avian orthoreovirus
AF004857.CDS3.S1_s_at AF004857.CDS3
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian orthoreovirus AF004857.CDS3 /DB_XREF=GI:2213899 /SEG=AF004857:+630,1610 /DEF=Avian reovirus strain 1733 segment S1, 10 kDa protein, 17 kDa protein and sigma C protein genes, complete cds. sigma C protein /NOTE=Minor outer capsid protein /REP_ORG=Avian orthoreovirus
AF059716.CDS1.S1_at AF059716.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian orthoreovirus AF059716.CDS1 /DB_XREF=GI:3170619 /SEG=AF059716:+16,1266 /DEF=Avian orthoreovirus strain 176 segment S2 major inner capsid protein sigma 1 gene, complete cds. major inner capsid protein sigma 1 /REP_ORG=Avian orthoreovirus
AF059717.CDS1.S1_at AF059717.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian orthoreovirus AF059717.CDS1 /DB_XREF=GI:3170621 /SEG=AF059717:+16,1266 /DEF=Avian orthoreovirus strain 138 segment S2 major inner capsid protein sigma 1 gene, complete cds. major inner capsid protein sigma 1 /REP_ORG=Avian orthoreovirus
AF059721.CDS1.S1_at AF059721.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian orthoreovirus AF059721.CDS1 /DB_XREF=GI:3170629 /SEG=AF059721:+31,1134 /DEF=Avian orthoreovirus strain 138 segment S3 major outer capsid protein sigma 2 gene, complete cds. major outer capsid protein sigma 2 /REP_ORG=Avian orthoreovirus
AF059724.CDS1.S1_at AF059724.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian orthoreovirus AF059724.CDS1 /DB_XREF=GI:3170635 /SEG=AF059724:+24,1127 /DEF=Avian orthoreovirus strain 176 segment S4 nonstructural protein sigma NS gene, complete cds. nonstructural protein sigma NS /REP_ORG=Avian orthoreovirus
AF059725.CDS1.S1_at AF059725.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian orthoreovirus AF059725.CDS1 /DB_XREF=GI:3170637 /SEG=AF059725:+24,1127 /DEF=Avian orthoreovirus strain 138 segment S4 nonstructural protein sigma NS gene, complete cds. nonstructural protein sigma NS /REP_ORG=Avian orthoreovirus
AF176590.CDS1.S1_s_at AF176590.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian pneumovirus AF176590.CDS1 /GEN=N /DB_XREF=GI:6224702 /SEG=AF176590:+14,1198 /DEF=Avian pneumovirus strain United States (Colorado) nucleocapsid protein (N) gene, complete cds and viral leader sequence. nucleocapsid protein /REP_ORG=Avian pneumovirus
AF176591.CDS1.S1_s_at AF176591.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian pneumovirus AF176591.CDS1 /GEN=P /DB_XREF=GI:6224704 /SEG=AF176591:+14,898 /DEF=Avian pneumovirus strain United States (Colorado) phosphoprotein (P) gene, complete cds. phosphoprotein /REP_ORG=Avian pneumovirus
AF176592.CDS1.S1_s_at AF176592.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian pneumovirus AF176592.CDS1 /GEN=M2 /DB_XREF=GI:6224706 /SEG=AF176592:+14,568 /DEF=Avian pneumovirus strain United States (Colorado) matrix glycoprotein M2 ORF1 (M2) and matrix glycoprotein M2 ORF2 (M2) genes, complete cds. matrix glycoprotein M2 ORF1 /REP_ORG=Avian pneumovirus
AF176592.CDS2.S1_s_at AF176592.CDS2
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian pneumovirus AF176592.CDS2 /GEN=M2 /DB_XREF=GI:6224707 /SEG=AF176592:+525,740 /DEF=Avian pneumovirus strain United States (Colorado) matrix glycoprotein M2 ORF1 (M2) and matrix glycoprotein M2 ORF2 (M2) genes, complete cds. matrix glycoprotein M2 ORF2 /REP_ORG=Avian pneumovirus
AF218359.CDS1.S1_at AF218359.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian reovirus strain 138 AF218359.CDS1 /DB_XREF=GI:7288542 /SEG=AF218359:+25,321 /DEF=Avian reovirus strain 138 segment S1 membrane fusion protein p10, p17, and virus-cell attachment protein sigma C genes, complete cds. membrane fusion protein p10 /NOTE=type I transmembrane protein /REP_ORG=Avian reovirus strain 138
AF218359.CDS2.S1_at AF218359.CDS2
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian reovirus strain 138 AF218359.CDS2 /DB_XREF=GI:7288543 /SEG=AF218359:+293,733 /DEF=Avian reovirus strain 138 segment S1 membrane fusion protein p10, p17, and virus-cell attachment protein sigma C genes, complete cds. p17 /NOTE=type I transmembrane protein /REP_ORG=Avian reovirus strain 138
AF218359.CDS3.S1_at AF218359.CDS3
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Avian reovirus strain 138 AF218359.CDS3 /DB_XREF=GI:7288544 /SEG=AF218359:+630,1610 /DEF=Avian reovirus strain 138 segment S1 membrane fusion protein p10, p17, and virus-cell attachment protein sigma C genes, complete cds. virus-cell attachment protein sigma C /NOTE=type I transmembrane protein /REP_ORG=Avian reovirus strain 138
AF243438.CDS1.S1_s_at AF243438.CDS1
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Gallid herpesvirus 2 AF243438.CDS1 /GEN=MDV001 /DB_XREF=GI:10180698 /SEG=AF243438:+1517,2176 /DEF=Gallid herpesvirus 2 serotype 1 isolate Md5, complete genome. hypothetical protein /REP_ORG=Gallid herpesvirus 2
telomerase RNA
TERC
379037 NR_001594
AF243438.CDS10.S1_s_at AF243438.CDS10
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Gallid herpesvirus 2 AF243438.CDS10 /GEN=MDV008 /DB_XREF=GI:10180700 /SEG=AF243438:+13833,14300 /DEF=Gallid herpesvirus 2 serotype 1 isolate Md5, complete genome. 24kD phosphoprotein pp24 /NOTE=uses alternate N-terminal exon b /REP_ORG=Gallid herpesvirus 2
AF243438.CDS11.S1_s_at AF243438.CDS11
Gallus gallus
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
Gallid herpesvirus 2 AF243438.CDS11 /GEN=MDV010 /DB_XREF=GI:10180702 /SEG=AF243438:+14535,16875 /DEF=Gallid herpesvirus 2 serotype 1 isolate Md5, complete genome. lipase /NOTE=uses alternate N-terminal exon b /REP_ORG=Gallid herpesvirus 2
38535 20754 Kbytes .Supplementary data files not provided
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