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Platform GPL3408 Query DataSets for GPL3408
Status Public on Apr 01, 2006
Title NKI/CMF Human 18k cDNA spotted microarray
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer Central Microarray Facility at the Netherlands Cancer Institute
Manufacture protocol See CMF website: http://microarray.nki.nl/download/protocols_o.html
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Description Spotted cDNA microarray containing 19200 spots: 768 control/empty spots and 18432 cDNA clones, selected from the Research Genetics Human Sequence Verified library. Clones were selected based on the availability of annotation data.
 
Web link http://microarray.nki.nl/download/geneid.html
Contributor(s) Booman M, Glas AM, de Jong D, Schuuring E, Kluin PM
Submission date Feb 01, 2006
Last update date Apr 01, 2006
Contact name Marije Booman
E-mail(s) m.booman@path.umcg.nl
Organization name University Medical Center Groningen
Department Pathology
Street address P.O. Box 30001
City Groningen
ZIP/Postal code 9700 RB
Country Netherlands
 
Samples (114) GSM94779, GSM94782, GSM94786, GSM94789, GSM94791, GSM94792 
Series (3)
GSE4157 Gene expression analysis of immune privileged site-associated DLBCL: The effect of HLA class II downregulation
GSE4296 Gene expression analysis of testicular DLBCL: ABC or GCB subtype?
GSE9689 Analysis of colorectal tissue from APC- and MYH-associated polyposis patients

Data table header descriptions
ID
GB_ACC GenBank Accession number of the spotted cDNA clone
UG_164 Unigene identifier from Unigene build 164
NKI_ID Internal ID number used by the Central Microarray Facility
Control_Empty Indicates empty spots ("Empty") or control spots ("Cy3 control")
CytoBand 164 Chromosomal location of the represented gene, as stored in Unigene build 164
Entrez_ID Entrez ID of the represented gene, as stored in Unigene build 164
Gene_Symbol Official gene symbol, as stored in Unigene build 164. Entries marked by ***** are absent in Unigene build 164 and annotated from older or newer Unigene builds.
Gene_Name Official gene name, as stored in Unigene build 164. Entries marked by ***** are absent in Unigene build 164 and annotated from older or newer Unigene builds.
SPOT_ID spot identifier

Data table
ID GB_ACC UG_164 NKI_ID Control_Empty CytoBand 164 Entrez_ID Gene_Symbol Gene_Name SPOT_ID
1 W96463 Hs.193132 6828 Homo sapiens transcribed sequences
2 N51917 Hs.47367 6852 5q22 56929 FEM1C fem-1 homolog c (C.elegans)
3 AA056580 Hs.217409 6876 10q24.2 118812 LOC118812 44050 protein
4 AA129861 Hs.239444 6900 4135 MAP6 microtubule-associated protein 6
5 62080 Empty Empty
6 62084 Empty Empty
7 62088 Empty Empty
8 62092 Empty Empty
9 62272 Empty Empty
10 62276 Empty Empty
11 62280 Empty Empty
12 62284 Empty Empty
13 62464 Empty Empty
14 62468 Empty Empty
15 62472 Empty Empty
16 62476 Empty Empty
17 62656 Empty Empty
18 62660 Empty Empty
19 62668 Cy3 control Cy3 control
20 62668 Cy3 control Cy3 control

Total number of rows: 19200

Table truncated, full table size 1642 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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