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Platform GPL368 Query DataSets for GPL368
Status Public on Oct 26, 2003
Title Amersham Biosciences CodeLink Uniset Rat I Bioarray
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Rattus norvegicus
 
Description Amersham Biosciences CodeLink Uniset Rat I Bioarray.

It has:

- ~10 000 rat genes, one specific, prescreened 30-mer probe per gene, functionally validated
- one set of housekeeping genes that may be used for baseline normalization
- 68 bacterial control probes, 18 positive control probes to monitor cDNA and cRNA synthesis and array activity,
- 50 negative control probes to determine threshold and assess background
 
Web link http://www.siu.edu/~pbgc/
Contributor(s) Iqbal MJ, Jones KL
Submission date Jul 24, 2003
Last update date Jun 16, 2005
Contact name M. Javed Iqbal
E-mail(s) mjiqbal@siu.edu
Phone 618-453-3121
Fax 618-453-5727
URL http://www.siu.edu/~pbgc
Organization name Southern Illinois University at Carbondale
Department Animal Sci, Food & Nutrition + Plant, Soil & General Agriculture
Lab Soybean Genomics
Street address 176 Ag. Building, MC 4415
City Carbondale
State/province IL
ZIP/Postal code 62901
Country USA
 
Samples (9) GSM8662, GSM8663, GSM8664, GSM8665, GSM8666, GSM8667 
Series (1)
GSE566 Endophyte-infected diet alters gene expression in heifer luteal tissue

Data table header descriptions
ID
GB_ACC GenBank Accession numbers
Probe_Name Oligonucleotide Probe name
Type Type of probe. Discovery - Genes of interest for particular species; Positive - Probes to bacterial transcripts that are spiked into total RNA; Negative - Probes to bacterial transcripts that are not spiked into the total RNA and are used for negative control threshold calculation; Other - Probes to bacterial transcripts that are neither part of the negative control threshold calculation nor the positive controls; Fiducials - Controls that the software package uses to grid the array.
Description Gene/oligo description
SPOT_ID

Data table
ID GB_ACC Probe_Name Type Description SPOT_ID
1 AA799301 AA799301_PROBE1 DISCOVERY EST188798 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA19 3' END SIMILAR TO LIGATIN, MRNA SEQUENCE.
2 AA799313 AA799313_PROBE1 DISCOVERY EST188810 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA25 3' END, MRNA SEQUENCE.
3 AA799329 AA799329_PROBE1 DISCOVERY EST188826 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA34 5' END, MRNA SEQUENCE.
4 AA799331 AA799331_PROBE1 DISCOVERY EST188828 RATTUS NORVEGICUS CDNA, 5' END
5 AA799347 AA799347_PROBE1 DISCOVERY EST188844 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA46 3' END, MRNA SEQUENCE.
6 AA799358 AA799358_PROBE1 DISCOVERY EST188855 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA53 3' END, MRNA SEQUENCE.
7 AA799400 AA799400_PROBE1 DISCOVERY EST188897 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA76 3' END, MRNA SEQUENCE.
8 AA799428 AA799428_PROBE1 DISCOVERY EST188925 RATTUS NORVEGICUS CDNA, 5' END
9 AA799450 AA799450_PROBE1 DISCOVERY EST188947 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB20 3' END, MRNA SEQUENCE.
10 AA799470 AA799470_PROBE1 DISCOVERY EST188967 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB41 3' END, MRNA SEQUENCE.
11 AA799471 AA799471_PROBE1 DISCOVERY EST188968 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB42 3' END, MRNA SEQUENCE.
12 AA799476 AA799476_PROBE1 DISCOVERY EST188973 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB47 3' END, MRNA SEQUENCE.
13 AA799487 AA799487_PROBE1 DISCOVERY EST188984 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB63 3' END, MRNA SEQUENCE.
14 AA799499 AA799499_PROBE1 DISCOVERY EST188996 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB77 3' END, MRNA SEQUENCE.
15 AA799503 AA799503_PROBE1 DISCOVERY EST189000 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB81 3' END, MRNA SEQUENCE.
16 AA799507 AA799507_PROBE1 DISCOVERY EST189004 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB87 3' END, MRNA SEQUENCE.
17 AA799515 AA799515_PROBE1 DISCOVERY EST189012 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAC03 3' END, MRNA SEQUENCE.
18 AA799526 AA799526_PROBE1 DISCOVERY EST189023 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAC15 3' END, MRNA SEQUENCE.
19 AA799532 AA799532_PROBE1 DISCOVERY EST189029 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAC23 3' END, MRNA SEQUENCE.
20 AA799544 AA799544_PROBE1 DISCOVERY EST189041 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAC36 3' END, MRNA SEQUENCE.

Total number of rows: 10399

Table truncated, full table size 1260 Kbytes.






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