GEO help: Mouse over screen elements for information.
Status
Public on Sep 01, 2006
Title
GRASP salmonid array, 16k v2.0 chip, updated data files 15 July 2005
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organisms
Oncorhynchus mykiss ; Salmo salar Manufacturer
Genomic Research on Atlantic Salmon Project
Manufacture protocol
details on the manufacture and testing of the 16k v. 2.0 array may be found on the GRASP website: http://web.uvic.ca/cbr/grasp/
Description
16k salmonid cDNA microarray from GRASP including features primarily from Atlantic salmon and rainbow trout
Submission date
Jul 05, 2006
Last update date
Feb 07, 2011
Contact name
Shaorong Li
E-mail(s)
Shaorong.Li@dfo-mpo.gc.ca Organization name
Fisheries and Oceans Canada
Department
Salmon and Freshwater Ecosystems Division
Lab
Molecular Genetics Lab
Street address
3190 Hammond Bay Road
City
Nanaimo
State/province
British Columbia
ZIP/Postal code
V9T 6N7
Country
Canada
Samples (240)
GSM159443 , GSM159444 , GSM159445 , GSM159446 , GSM159447 , GSM159449
GSM159451 ,
GSM159454 ,
GSM159456 ,
GSM159459 ,
GSM159461 ,
GSM160087 ,
GSM160101 ,
GSM160102 ,
GSM160103 ,
GSM189698 ,
GSM189699 ,
GSM189701 ,
GSM189705 ,
GSM189706 ,
GSM189707 ,
GSM189720 ,
GSM189721 ,
GSM189731 ,
GSM189744 ,
GSM189745 ,
GSM189746 ,
GSM189747 ,
GSM189748 ,
GSM189749 ,
GSM189750 ,
GSM343584 ,
GSM343585 ,
GSM343586 ,
GSM343587 ,
GSM343588 ,
GSM343589 ,
GSM343590 ,
GSM343591 ,
GSM343592 ,
GSM343593 ,
GSM343594 ,
GSM343595 ,
GSM343596 ,
GSM343597 ,
GSM343598 ,
GSM343599 ,
GSM343600 ,
GSM343601 ,
GSM343602 ,
GSM343603 ,
GSM343604 ,
GSM343605 ,
GSM343606 ,
GSM343607 ,
GSM343608 ,
GSM343609 ,
GSM343610 ,
GSM343611 ,
GSM343612 ,
GSM343613 ,
GSM343614 ,
GSM343615 ,
GSM343616 ,
GSM343617 ,
GSM343618 ,
GSM343619 ,
GSM343620 ,
GSM343621 ,
GSM343622 ,
GSM343623 ,
GSM343624 ,
GSM343625 ,
GSM343626 ,
GSM343627 ,
GSM343628 ,
GSM343629 ,
GSM343630 ,
GSM343631 ,
GSM343632 ,
GSM343633 ,
GSM343634 ,
GSM343635 ,
GSM343636 ,
GSM343637 ,
GSM343638 ,
GSM343639 ,
GSM343640 ,
GSM343641 ,
GSM343642 ,
GSM343643 ,
GSM343644 ,
GSM343645 ,
GSM343646 ,
GSM343647 ,
GSM343648 ,
GSM343649 ,
GSM343650 ,
GSM343651 ,
GSM343652 ,
GSM343653 ,
GSM343654 ,
GSM343655 ,
GSM343656 ,
GSM343657 ,
GSM343658 ,
GSM343659 ,
GSM343660 ,
GSM343661 ,
GSM343662 ,
GSM349597 ,
GSM556180 ,
GSM556181 ,
GSM556182 ,
GSM556183 ,
GSM556184 ,
GSM556185 ,
GSM556186 ,
GSM556187 ,
GSM556188 ,
GSM556189 ,
GSM556190 ,
GSM556191 ,
GSM556192 ,
GSM556193 ,
GSM556194 ,
GSM556195 ,
GSM556196 ,
GSM556197 ,
GSM556198 ,
GSM556199 ,
GSM556200 ,
GSM556201 ,
GSM556202 ,
GSM556203 ,
GSM556204 ,
GSM556205 ,
GSM556206 ,
GSM556207 ,
GSM556208 ,
GSM556209 ,
GSM556210 ,
GSM556211 ,
GSM556212 ,
GSM556213 ,
GSM556214 ,
GSM556215 ,
GSM556216 ,
GSM556217 ,
GSM556218 ,
GSM556219 ,
GSM556220 ,
GSM556221 ,
GSM556222 ,
GSM556223 ,
GSM556224 ,
GSM556225 ,
GSM556226 ,
GSM556227 ,
GSM556228 ,
GSM556229 ,
GSM556230 ,
GSM556231 ,
GSM556232 ,
GSM556233 ,
GSM556234 ,
GSM556235 ,
GSM556237 ,
GSM556238 ,
GSM556239 ,
GSM556241 ,
GSM556242 ,
GSM556243 ,
GSM556244 ,
GSM556245 ,
GSM556246 ,
GSM556247 ,
GSM556248 ,
GSM556249 ,
GSM556250 ,
GSM556251 ,
GSM556252 ,
GSM556253 ,
GSM556254 ,
GSM556255 ,
GSM556256 ,
GSM556257 ,
GSM556258 ,
GSM556259 ,
GSM556260 ,
GSM556261 ,
GSM556262 ,
GSM556263 ,
GSM556264 ,
GSM556265 ,
GSM556266 ,
GSM556267 ,
GSM556268 ,
GSM556269 ,
GSM556270 ,
GSM556271 ,
GSM556272 ,
GSM556273 ,
GSM556274 ,
GSM556275 ,
GSM556276 ,
GSM556277 ,
GSM556278 ,
GSM556279 ,
GSM556280 ,
GSM556281 ,
GSM556282 ,
GSM556283 ,
GSM556284 ,
GSM556285 ,
GSM556286 ,
GSM556287 ,
GSM556288 ,
GSM556289 ,
GSM556290 ,
GSM556291 ,
GSM556292 ,
GSM556293 ,
GSM556294 ,
GSM556295 ,
GSM556296 ,
GSM556297 ,
GSM556298 ,
GSM556299 ,
GSM556300 ,
GSM556301 ,
GSM556302 ,
GSM1213268 ,
GSM1213269 ,
GSM1213270 ,
GSM1213271 ,
GSM1213272 ,
GSM1213273 ,
GSM1213274 ,
GSM1213275 Series (6)
GSE6924 Salmonid host response to Hematopoietic Necrosis virus: cellular receptors, viral control and novel pathways of defence
GSE6944 Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss).
GSE8285 Short-term growth hormone treatment on the liver and muscle transcriptome in rainbow trout (Oncorhynchus mykiss)
GSE13657 Salmon Spawning Migration: Metabolic Shifts and Environmental Triggers
GSE22346 Transcriptomics of environmental adaptation and survival in wild adult Pacific Sockeye Salmon (Oncorhynchus nerka) during spawning migration
GSE50054 Facing warm temperatures during migration – cardiac mRNA responses of two adult sockeye salmon Oncorhynchus nerka populations to warming and swimming challenges
Data table header descriptions ID meta_row Imagene metarow designation from GRASP gene ID file
meta_column Imagene metacolumn designation from GRASP gene ID file
row Imagene row designation from GRASP gene ID file
column Imagene column designation from GRASP gene ID file
GB_ACC GenBank Accession Number
TC tentative consensus (TC) sequences identifiers in The TIGR (http://www.tigr.org/tdb/tgi/)
description Gene ID annotation (Detailed method for assigning putative IDs is on the GRASP website: http://web.uvic.ca/cbr/grasp/)
GO significant Blast hit from the Gene Ontoloy (GO) database (April 2005 version), the best bit score was chosen
NR significant Blast hit form Genbank's non-redundant protein (NR) database (May 2005 version) for the genes with no GO hit
CDD significant Blast hit form Genbank's conserved domain database (CDD) (Feb 2005 version) for the genes with no GO or NR hit
NT significant Blast hit form Genbank's non-redundant nucleotide (NT) database (January 2005 version) for the genes with no GO or NR or CDD hit
Molecular_Function one of the three categories of biological information for Gene Ontology (GO) term
Biological_Process one of the three categories of biological information for Gene Ontology (GO) term
Cellular_Component one of the three categories of biological information for Gene Ontology (GO) term
Aliases GRASP gene ID aliases
Species Organism on the array
SEQUENCE expressed sequence tags (ESTs) sequences from the clones
Consensus_Sequence sequences for contigs which were assembled with a large set of expressed ESTs using Phrap
SPOT_ID
Data table ID meta_row meta_column row column GB_ACC TC description GO NR CDD NT Molecular_Function Biological_Process Cellular_Component Aliases Species SEQUENCE Consensus_Sequence SPOT_ID 1
1
1
1
1
U17997 n/a
U17997 GFP
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
2
1
1
1
2
n/a
Blank Well
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Blank Well
3
1
1
1
3
n/a
Blank Well
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Blank Well
4
1
1
1
4
n/a
Blank Well
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Blank Well
5
1
1
1
5
n/a
Blank Well
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Blank Well
6
1
1
1
6
n/a
Blank Well
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Blank Well
7
1
1
1
7
n/a
Blank Well
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Blank Well
8
1
1
1
8
n/a
Blank Well
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Blank Well
9
1
1
1
9
n/a
Blank Well
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Blank Well
10
1
1
1
10
CA054869 TC31489
CA054869 UNKNOWN
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Salmo salar
ATATATTTATTCCCTTGGCAAGTCATTTTTAACTGTTGGGCACATTTTTTACTTGTTTGTGTGTGTGTGGTCTCCCACAGTATAAATGGTAAAAAGTCTATAAAAAAATGACTTCAAATGTCAAACGACATCTTCCAAGTGCTAATAGAGTACCTTCAACTGAGGGCCAATGCAGTCAAAAACGTGAATTACCTGTGTTTTAAATTTCCACACTATGAGGTTGGAATAATACTGTGAAATTATGATAATGTCCTTTACGTATAAGAGCAGTTTGAAAAGACCGTCTGAAATTTCAGCCTTTTTATGTAGGATGGAGTTTTGGGCTTCCATGGTGACATCACCATGTGGTAAATTAGTTAATAGACCAATAAGAAAGAGTTCCGAACCTCTCTGCCAATAACAGTTCATTTTCTGTTTTTGCCTAAAGCACTCTCAGACAGTCCTAGCAAATGTCTTGATTAAGAAATTGCTCTTTGATAAAAAAAGCTATTTGTTTCCTTTTCACTATTTTAATTGAAGTACCTTACTCTGTTTTCATTGTTACTCATAAATGATTTGATATTTAGATAAAAATGGCTGCATTGGTCCTTTAAATATCCTTCACAAACAGTGTCACACAAGAGACATATAGGCACAAACACAGAGTGCATCAAGGCATAAACACAGACCATGTAATACTCCCCTCCTGGTGTTGTGCAATTTGGACTGTGTTGTTAGTCTCTCTGATGACAGTGGTTGAACCATTTCGTTGCCCTATAC
AGCATTTAAAAATATATATTTATTCCCTTGGCAAGTCATTTTTAACTGTTGGGCACATTTTTTACTTGTTTGTGTGTGTGTGGTCTCCCACAGTATAAATGGTAAAAAGTCTATAAAAAAATGACTTCAAATGTCAAACGACATCTTCCAAGTGCTAATAGAGTACCTTCAACTGAGGGCCAATGCAGTCAAAAACGTGAATTACCTGTGTTTTAAATTTCCACACTATGAGGTTGGAATAATACTGTGAAATTATGATAATGTCCTTTACGTATAAGAGCAGTTTGAAAAGACCGTCTGAAATTTCAGCCTTTTTATGTAGGATGGAGTTTTGGGCTTCCATGGTGACATCACCATGTGGTAAATTAGTTAATAGACCAATAAGAAAGAGTTCCGAACCTCTCTGCCAATAACAGTTCATTTTCTGTTTTTGCCTAAAGCACTCTCAGACAGTCCTAGCAAATGTCTTGATTAAGAAATTGCTCTTTGATAAAAAAAGCTATTTGTTTCCTTTTCACTATTTTAATTGAAGTACCTTACTCTGTTTTCATTGTTACTCATAAATGATTTGATATTTAGATAAAAATGGCTGCATTGGTCCTTTAAATATCCTTCACAAACAGTGTCACACAAGAGACATATAGGCACAAACACAGAGTGCATCAAGGCATAAACACAGACCATGTAATACTCCCCTCCTGGTGTTGTGCAATTTGGACTGTGTTGTTAGTCTCTCTGATGACAGTGGTTGAACCATTTCGTTGCCCTATAC
11
1
1
1
11
CB490276 TC70230
CB490276 [GO] [P30276] G2/mitotic-specific cyclin B2.
[P30276] [e=1.86078e-18] G2/mitotic-specific cyclin B2.
[Q60FX9] [e=3.06667e-30] G2/mitotic-specific cyclin B2
n/a
n/a
cyclin-dependent protein kinase regulator activity
cell cycle, regulation of cell cycle, mitosis, cytokinesis
nucleus
CycB2, IPI00314149
Oncorhynchus mykiss
CTTGGCCCGAACAGACTGCTGGGTCTCAAGGCGCTGCAGATATCCATAGATATCCTTTATATATTCAGAGCACAGTTGTGGCAGGTCTGAATCCCCTTCATCAATGTCTTCTACAGCAAGCAGAGCTTCTGAGAACGCCTGGCACAATTCCTCTTCCTTCATGGACACGTTAGCATACACTTCAGGCTGAGGAACTTTAGGCCAAACAGCTGCGGGCTGGTCTTGTTGGTTCATAGATTGTTTGGTTGAGGCCTTGGCAGGAACGGTCTTCTTGAACGGCACCGCTTTGCAAGCATTGGGAAAGTTGGACAGCTCTCCAAGCACAGCCCTTCCTGCTCCAGCTACGTTTGCTTTTCCCATTAGTGTTGGGTTGTCTGCGTTCCTTAACGCAGAACCAACTTCTAATGACATCGTC
ACTTGGCCCGAACAGACTGCTGGGTCTCAAGGCGCTGCAGATATCCATAGATATCCTTTATATATTCAGAGCACAGTTGTGGCAGGTCTGAATCCCCTTCATCAATGTCTTCTACAGCAAGCAGAGCTTCTGAGAACGCCTGGCACAATTCCTCTTCCTTCATGGACACGTTAGCATACACTTCAGGCTGAGGAACTTTAGGCCAAACAGCTGCGGGCTGGTCTTGTTGGTTCATAGATTGTTTGGTTGAGGCCTTGGCAGGAACGGTCTTCTTGAACGGCACCGCTTTGCAAGCATTGGGAAAGTTGGACAGCTCTCCAAGCACAGCCCTTCCTGCTCCAGCTACGTTTGCTTTTCCCATTAGTGTTGGGTTGTCTGCGTTCCTTAACGCAGAACCAACTTCTAATGACATCGTC
12
1
1
1
12
CA769480 TC22772
CA769480 [NR] [NP_001006203] similar to endothelial differentiation-related factor 1 isoform alpha; multiprotein bridging factor 1 [Gallus gallus]
n/a
[NP_001006203] [e=6.29232e-67] similar to endothelial differentiation-related factor 1 isoform alpha; multiprotein bridging factor 1 [Gallus gallus]
n/a
n/a
transcription coactivator activity, methyl-CpG binding, DNA binding
regulation of transcription from RNA polymerase II promoter, central nervous system development, tracheal system development (sensu Insecta)
n/a
BcDNA:GH10148, BcDNA:GM01267, CG4143, MBF1
Oncorhynchus mykiss
GCTACAGCAGTAGGACACGTCCATATCGTAGTGACACAATATGCAAAGTGTGAAAAGGCTGCAATCAAGCACGTTCAAAATGGATAAAAATAACATTTTCAGAAACAATTTTTATGTTAAGGTAGAGTCGATGCACATGGCCACGGTAAAATTCACCTTGTCTGTTTCAACCATCCCCCCAAAAAGTTAAAGAAAAAATGTCATTTCAGAGCACTTTTGGTTAGCAAGTTTTGCAATGATTCAATCGTTCATTCATTGATTATAAGAAGTAATTTGTGATGATTTGTCAGTATATGCAGCTTGCAATGTGGTGGATCACCAGGTCCTGTAGCAGGACACAGGTGGAGATCAGCCCAGGTAGAGGAGGGTGATAGGGGAGAGAGGGGGGTTTGGAGAGTTAAGGGAGGCAGGGTCATAGCGGGAGTTGAAAGGTGGGGATAGAGATGGGGGACATGGGGAAGGGGGGGCTGATTTCGAGGCTTTGTCCTCATTTCTTCTTGGGTTTTGCTTCCAGAGGCAGTCCAATATCTTTCCCACGCAGCTTCAAACCGATTGCTCTCTCAATTTTGCCCATGACCTGATTGTTGGGAATTGCTTTTCCACACTCATAGTCTGCGATGACCTG
AAACTGTCAAACTTTATTTGAAGATCAAAACCAAGCTACAGCAGTAGGACACGTCCATATCGTAGTGACACAATATGCAAAGTGTGAAAAGGCTGCAATCAAGCACGTTCAAAATGGATAAAAATAACATTTTCAGAAACAATTTTTATGTTAAGGTAGAGTCGATGCACATGGCCACGGTAAAATTCACCTTGTCTGTTTCAACCATCCCCCCAAAAAGTTAAAGAAAAAATGTCATTTCAGAGCACTTTTGGTTAGCAAGTTTTGCAATGATTCAATCGTTCATTCATTGATTATAAGAAGTAATTTGTGATGATTTGTCAGTATATGCAGCTTGCAATGTGGTGGATCACCAGGTCCTGTAGCAGGACACAGGTGGAGATCAGCCCAGGTAGAGGAGGGTGATAGGGGAGAGAGGGGGGTTTGGAGAGTTAAGGGAGGCAGGGTCATAGCGGGAGTTGAAAGGTGGGGATAGAGATGGGGGACATGGGGAAGGGGGGGCTGATTTCGAGGCTTTGTCCTCATTTCTTCTTGGGTTTTGCTTCCAGAGGCAGTCCAATATCTTTCCCACGCAGCTTCAAACCGATTGCTCTCTCAATTTTGCCCATGACCTGATTGTTGGGAATTGCTTTTCCACACTCATAGTCTGCGATGACCTGAGGCTTCTCATTAATTTTAGTGGCCAGATCTTTCTGAGTGAGGCCACTGTTCTGGCGGCCCTGCTGGATAACCTTTCCCACCTCCAGGGAGACCCTCAGGTGCTGCAGCTCCTCTGTCTCCCGGTCCAGCTTGGCGGTGTTCTTGGTCACCAGGTGCTGTTTGTTCTGCCCTGCAGACCATTTCTTGGTAGTATCGAGGTCTTCTCCACGTCTCTGTGCAGCTGTGATAGCCTGCTTAGATTTGGCCTGGGCAGCAGTCGGACCCTTCTTCCTCAACACAGTCACAGTGTCCCAGTCGCTTTCTGCCATTTTTCCCAGGGATTATTAGCTTAACGTTACGACAATAACTATATACACAAATATAAACCTATCAGCCGGGGGTACTGAAACGATAGCTGACAATGTAGGGCGACGTAAGGCTTACTTTGCCACGCT
13
1
1
1
13
CA063502 n/a
CA063502 UNKNOWN
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Salmo salar
AAGTAGGCAAGTGAATGGTCGAGGACAGGCAAAAGGTCAAAACCAGTTCAGAGTCCAGGAGGCACAGAGTGGCAGGCAGGCTTGAGGTCAAGGCAGGCAGAATGGTCAGGCAGGCGGGTACAGAGTCCAGAATAGGCAAGGGTCAAAACCGGGAGGATTAGAAAAAGGAGAATAGCAAAGGCAGGAGTACGGGAAAAAACGCTGGTTGACGTGGAACATACAACACGAACTGGCACAGAGAGACAGGAAACACAGGGATAAATACACTGGGGAAAACAAGCGACACCTGGAGGGGGTGGAGACAATAACAAGATCAGGTGAAACAGATCAGGGTGTGACACTGTATACAAATGTATTTTTAAAATATTTATTAGATCCCAGAACAGCAGTCTTGACATTGTAATTTGTGCTTACCTATGGCTAACCTTGTGGTTTGATCCCCGACCAAGTCATACCAAAGGCTTTAAAAATGAGACCTGATGCGTCTCTACTTGGCTCTCAGCATCAAGGAGATGCGCTAGACTTGTGTCCTGTCTAGAGGGTGTACTTGTAAATCATGCTGCTTTTCGCTACAGAAGCAGGAGATAGGCTCCTGCTTCTATGAGCCTTTCTGGCTTGTACAAGGTTACTTACTATGGCTTATTACAAACCTTCCATATACATACACTGTTATGTAAGAGCTGGCATAAACTGATTGATCTTCATGATCCCAAGTCTTAAAACAGTATTTTATGTTT
AAGTAGGCAAGTGAATGGTCGAGGACAGGCAAAAGGTCAAAACCAGTTCAGAGTCCAGGAGGCACAGAGTGGCAGGCAGGCTTGAGGTCAAGGCAGGCAGAATGGTCAGGCAGGCGGGTACAGAGTCCAGAATAGGCAAGGGTCAAAACCGGGAGGATTAGAAAAAGGAGAATAGCAAAGGCAGGAGTACGGGAAAAAACGCTGGTTGACGTGGAACATACAACACGAACTGGCACAGAGAGACAGGAAACACAGGGATAAATACACTGGGGAAAACAAGCGACACCTGGAGGGGGTGGAGACAATAACAAGATCAGGTGAAACAGATCAGGGTGTGACACTGTATACAAATGTATTTTTAAAATATTTATTAGATCCCAGAACAGCAGTCTTGACATTGTAATTTGTGCTTACCTATGGCTAACCTTGTGGTTTGATCCCCGACCAAGTCATACCAAAGGCTTTAAAAATGAGACCTGATGCGTCTCTACTTGGCTCTCAGCATCAAGGAGATGCGCTAGACTTGTGTCCTGTCTAGAGGGTGTACTTGTAAATCATGCTGCTTTTCGCTACAGAAGCAGGAGATAGGCTCCTGCTTCTATGAGCCTTTCTGGCTTGTACAAGGTTACTTACTATGGCTTATTACAAACCTTCCATATACATACACTGTTATGTAAGAGCTGGCATAAACTGATTGATCTTCATGATCCCAAGTCTTAAAACAGTATTTTATGTTT
14
1
1
1
14
CB512130 n/a
CB512130 UNKNOWN
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Salmo salar
CAAATACTATTTGTTTTCAAGGACAATTTTATGATTGAATAATATAATCTACGAGTTGAGTTGCAATGTAGTTTACTGGGTGTCATAACATCAATAAAAATAGTAATATTGTCCAAAGTTGCTCAACATTCTCCACTTATGATGACCCTCGAATCACACTCAAATATAGCCAAATACGTGTTATGAATAAAATACATTTAGCGTAACCTTCTTTGATCACAAGAAACACAGAATGGTGACAACCACTCAGTTCTAAAATACATGATTTTATGCCTTGCCTTTTTTGTTACAGACCAACTTAATATGCTAATGATAACAAGTGACTCAGAGCACGTGAGAAACATATTATACTGTATTAGTCCACTACATCAGGTCAAATTGGAATTATGAAGGGTAATAATGTCAAACTCCCAACACTGAACGGCAAAGACAGAAATGAAACATTACAATAACAATGTATTTGAAAAAAATCCTAACAGAAAAACAATAGTAAGATAAATGAAGGTGTGATATTCTACACATCATACAATACATATAGCCATTGAAAATTGTTTTGGCTGAAGTTGTAGAAAAGTAGATTACAAAAAAAAAAACCTTCCTTGAAAAAAATGTATAATTCCTCTTCCAAGTAAGAATACACACAATAGTAAATAAATGTAAATGGCTTGTTGGCCATCTGCCCAAACCTGAAGTCATACAGTTTGGTGGCATGACTA
CAAATACTATTTGTTTTCAAGGACAATTTTATGATTGAATAATATAATCTACGAGTTGAGTTGCAATGTAGTTTACTGGGTGTCATAACATCAATAAAAATAGTAATATTGTCCAAAGTTGCTCAACATTCTCCACTTATGATGACCCTCGAATCACACTCAAATATAGCCAAATACGTGTTATGAATAAAATACATTTAGCGTAACCTTCTTTGATCACAAGAAACACAGAATGGTGACAACCACTCAGTTCTAAAATACATGATTTTATGCCTTGCCTTTTTTGTTACAGACCAACTTAATATGCTAATGATAACAAGTGACTCAGAGCACGTGAGAAACATATTATACTGTATTAGTCCACTACATCAGGTCAAATTGGAATTATGAAGGGTAATAATGTCAAACTCCCAACACTGAACGGCAAAGACAGAAATGAAACATTACAATAACAATGTATTTGAAAAAAATCCTAACAGAAAAACAATAGTAAGATAAATGAAGGTGTGATATTCTACACATCATACAATACATATAGCCATTGAAAATTGTTTTGGCTGAAGTTGTAGAAAAGTAGATTACAAAAAAAAAAACCTTCCTTGAAAAAAATGTATAATTCCTCTTCCAAGTAAGAATACACACAATAGTAAATAAATGTAAATGGCTTGTTGGCCATCTGCCCAAACCTGAAGTCATACAGTTTGGTGGCATGACTA
15
1
1
1
15
CA044918 TC26696
CA044918 [GO] [P50295] Arylamine N-acetyltransferase 2 (EC 2.3.1.5) (Arylamide acetylase 2) (N-acetyltransferase type 2) (NAT-2).
[P50295] [e=3.92134e-60] Arylamine N-acetyltransferase 2 (EC 2.3.1.5) (Arylamide acetylase 2) (N-acetyltransferase type 2) (NAT-2).
[NP_990671] [e=3.69181e-68] N-acetyltransferase [Gallus gallus]
[1353] [e=7.32808e-77] pfam00797, Acetyltransf_2, N-acetyltransferase. Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30kDa. It facilitates the transfer of an acetyl group from Acetyl Coenzyme A on to a wide range of arylamine, N-hydro...
n/a
transferase activity, acyltransferase activity, acetyltransferase activity, arylamine N-acetyltransferase activity
metabolism
n/a
IPI00116459
Salmo salar
GAAAACCTCAGCATTCACTGTGGTGAGAAGATCACTATGGACCATGAGTTGATTTTCAATAAGATTGTGAGGAGCAATCGGGGGGGTTGGTGTTGTGAGAATAACCTCCTCTTTGCTTGGGTGCTAAAAGAGATGGGTTATAATCCAGTAACACTGGGTTCAAGAGTCTACAACAACACCATCAACCAGTTCGGCCCAAAAGACTCTCACCTCATCAACAAGGTAGTTATTGATGGGACTGCTTACATTGCAGATGTGAGCTTTGGGGCATCCTCCCAAATATGGTACCCTCTTGAGCTCGTCTCCGGGAAGGACCAGCCACAATCCCCTGGTGTCTTCCGTCTCATACAAGATGGAGACCTGTGGACCCTGGAGAAGACTGGTCGAAAGCCTCTGGTTCTCAATGAGGCCTTTACCAACTCACCTCTAGTAGACAAGAGCCCAACCAAGAAGATCTACGGCTTCACCCTGGTTCCCCGTGGGGTTGATAATTTCCTAGAGACTTCCCACTGCCTTCAGACAGATCCAAAGTCTCTATTCACCAACAAGTCCATCTGCTCACTGCAGACTGCTACAGGATTCAGAGCTCTAATTGGCTGGACCTTCAGTGAGGTCACCTACAACAACCAGGAGGGTTTTGATGTTTTGGATATGAAAGACATATCTGATGATGATGTTGATAAAGTGCTGAAGGAAATGTTTAATGTG
TGAAAACCTCAGCATTCACTGTGGTGAGAAGATCACTATGGACCATGAGTTGATTTTCAATAAGATTGTGAGGAGCAATCGGGGGGGTTGGTGTTGTGAGAATAACCTCCTCTTTGCTTGGGTGCTAAAAGAGATGGGTTATAATCCAGTAACACTGGGTTCAAGAGTCTACAACAACACCATCAACCAGTTCGGCCCAAAAGACTCTCACCTCATCAACAAGGTAGTTATTGATGGGACTGCTTACATTGCAGATGTGAGCTTTGGGGCATCCTCCCAAATATGGTACCCTCTTGAGCTCGTCTCCGGGAAGGACCAGCCACAATCCCCTGGTGTCTTCCGTCTCATACAAGATGGAGACCTGTGGACCCTGGAGAAGACTGGTCGAAAGCCTCTGGTTCTCAATGAGGCCTTTACCAACTCACCTCTAGTAGACAAGAGCCCAACCAAGAAGATCTACGGCTTCACCCTGGTTCCCCGTGGGGTTGATCATTTCCTAGAGACTTCCCACTACCTTCAGACAGATCCAAAGTCTCTATTCACCAACAAGTCTATCTGCTCACTGCAGACTGCTACAGGATTCAGAGCTCTAATTGGCTGGACCTTCAGCGAGGTCACCTACAACAACCAGGATGGTTTTGATGTTTTGGACATGAAAGACATATCTGATGATGATGTGGATAAAGTGCTGAAGGAAATGTTTAATGTGTTGTTAGCAAACAAGCTGGTTCCCATAAACAACAAAGCTGGCTACACTATTTAAGAACTTGTTTGCCTGTAACATTTAATATTTAATGCGATGTAATTGTAATGTAGCCTTCGCAAATTTAGGTGCTGCTACACTGACCAAAGATTCCTCACAACGAGATCAGTGAGATTTACAAAACACATTTCGTATTTTCTGTCAATATTAAAAACTTATTTCACCAGAGCTGATTGTGAGGTATTTGAACACTCAATAAACATGCTTTT
16
1
1
1
16
CB512117 TC33226
CB512117 UNKNOWN
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Salmo salar
ACTTTATTCAGGATGGAAAAAAAGTAGATTAAGTCAGTTAAGTAGCACTGCTCGGACTTCCAAAAAGCAACACCAGACATGTACTGTACATACAATCCAAGGAGCAGCCTTGTGTGGATGAAAACCGTTCACTGTGCTTCCTGTTTCTGGCACACATGAGAGACGAGACCATCTAAACAAAAGAAAGTGCCAAGGGGGGAAGAACATGGAATCACATTGGTACAAATAAGCCATGTAGTGAAGTTAAGGACTTTTCAAATGTACAGAAATTATTAATTAATTTAGAAAACAAATTACCTATGGTATTGATTATGGTTACAACTTGAACAAGGTCATTCTAGTCTAGTGTGATTTCAGAATGCTTGGATGAGCCATGGTTTAATTGAGTCCAATTAACCCACAATCTTGCTATCCAATGAGCCAGTGGCTCCCACTTCTCAGACTGGCTTACATGCCACATAATACAGCACCCCCAGGGTGGGTAAACAAAGGTTACATGGGGTTGGACTCACTGGAGTATAAGCGTGATCAGATGGGTTCATTAGATTAAAGATTACCATTGCCTTTGGCAGCATTCCCAAACCCAAGTCTAAAAGTACCCCTCATGATAACTGGACACCAATCCATCTCTGTTCATTTCCCTACAAACTGCAAAACAAAGGTGATGTCCAATAAGTGGTTAACATTCACCTTANAACAGACTCAGCATATGACGTTGCCACGAACAGAAAATATGCAACGCAAGATTACACTCCTCAAATGTANGCACATGTGCTCTTCATGCTGCTACAACATGATCACTGCTGGACAAA
ACTTTATTAAGGATGGAAAAACAGTAGATTAAGTCAGTTAAGTAGCACTGCTCGGACTTCCAAAAAGCAACACCAGACATGTACTGTACATACAATCCAAGGAGCAGCCTTGTGTGGATGAAAACCGTTCACTGTGCTTCCTGTTTCTGGCACACATGAGAGACGAGACCATCTAAACAAAAGAAAGTGCCAAGGGGGGAAGAACATGGAATCACATTGGTACAAATAAGCCATGTAGTGAAGTTAAGGACTTTTCAAATGTACAGAAATTATTAATTAATTTAGAAAACAAATTACCTATGGTATTGATTATGGTTACAACTTGAACAAGGTCATTCTAGTCTAGTGTGATTTCAGAATGCTTGGATGAGCCATGGTTTAATTGAGTCCAATTAACCCACAATCTTGCTATCCAATGAGCCAGTGGCTCCCACTTCTCAGACTGGCTTACATGCCACATAATACAGCACCCCCAGGGTGGGTAAACAAAGGTTACATGGGGTTGGACTCACTGGAGTATAAGCGTGATCAGATGGGTTCATTAGATTAAAGATTACCATTGCCTTTGGCAGCATTCCCAAACCCAAGTCTAAAAGTACCCCTCATGATAACTGGACACCAATCCATCTCTGTTCATTTCCCTACAAACTGCAAAACAAAGGTGATGTCCAATAAGTGGTTAACATTCACCTTANAACAGACTCAGCATATGACGTTGCCACGAACAGAAAATATGCAACGCAAGATTACACTCCTCAAATGTANGCACATGTGCTCTTCATGCTGCTACAACATGATCACTGCTGGACAAA
17
1
1
1
17
CB505689 TC25123
CB505689 UNKNOWN
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
Salmo salar
TTTTTAAGAGTCAACAAACTTTTATTGAAATAAATACAAAAGCAACAAATGAGAACGTGAGAAACTCAAAAGCAACAAATATCTGCAACATTTCTCATCTTTTTACATATGGTCTATTGTAGAAAAAAAACAATAGATTTCTCATTTGTGACAATAAAAATTATAGAACAAAATAGAAACACTATTCACATTTAACGGTTGTCAAAAACTACAAAACAAGCAAAGTGACCAAACCTAAAATTGGTATTAGAATGTCAAAGTTTGGTCTCAGAATCATCAATAGTGAAGTACACTCCATTTACTTTTTAAATAACAAATTATATATTAAAGCATGGGTTTTAAAGGAATGTGACAGTTCATTGACCAAGACTGTCTGAGTGTGGATCACAGGGCCAGATAATACACCATCTAGATTAATCCCATAAACCCCCCCCCCATTGGCACCATCCCAATAAACAAACAAGAGCAGAATACCTTTAACAATTATTTTTTTTAACACAATAACAGAATTGTACAATCTTATGCTTTAAAAAAACATGACCACATCACATTAGCTGATTTTAAATAAATTGACAGATCATTCCTAGAATTATAATTTCAGAGTACGCAACCAATCAATTCATATTTAGAGTCACTGCTAGAGCAGCTCAAGACATTGGCAGCAATTGACAATTAGTGTCTGTCAAATGGACGTACATACATTTGAAAAGTACTTAGAACATTTCATATATAAATATTGATTGTATAGTATTTGTCACATATAATTATCC
AAGAGTCAACAAACTTTTATTGAAATAAATACAAAAGCAACAAATGAGAACGTGAGAAACTCAAAAGCAACAAATATCTGCAACATTTCTCATCTTTTTACATATGGTCTATTGTAGAAAAAAAACAATAGATTTCTCATTTGTGACAACAAAATTATAGAACAAAATAGAAACACTATTCACATTTAACGGTTGTCAAAAACTACAAAACAAGCAAAGTGACCAAACCTAAAATTGGTATTAGAATGTCAAAGTTTGGTCTCAGAATCATCAATAGTGAAGTACACTCCATTTACTTTTTAAATAACAAATTATATATTAAAGCATGGGTTTTAAAGGAATGTGACAGTTCATTGACCAAGACTGTCTGAGTGTGGATCACAGGGCCAGATAATACACCATCTAGATTAATCCCATAAACCCCCCCCCCATTGGCACCATCCCAATAAACAAACAAGAGCAGAATACCTTTAACAATTATTTTTTTTAACACAATAACAGAATTGTACAATCTTATGCTTTAAAAAAACATGACCACATCACATTAGCTGATTTTAAATAAATTGACAGATCATTCCTAGAATTATAATTTCAGAGTACGCAACCAATCAATTCATATTTAGAGTCACTGCTAGAGCAGCTCAAGACATTGGCAGCAATTGACAATTAGTGTCTGTCAAATGGACGTACATACATTTGAAAAGTACTTAGAACATTTCATATATAAATATTGATTGTATAGTATTTGTCACATATAATTATCC
18
1
1
1
18
CA050278 TC24391
CA050278 [GO] [Q9WTL7] Acyl-protein thioesterase 2 (EC 3.1.2.-) (Lysophospholipase II) (Lysophospholipase 2) (mLyso II).
[Q9WTL7] [e=1.7165e-19] Acyl-protein thioesterase 2 (EC 3.1.2.-) (Lysophospholipase II) (Lysophospholipase 2) (mLyso II).
[XP_417832] [e=4.55781e-19] PREDICTED: similar to Acyl-protein thioesterase 2 (Lysophospholipase II) (LPL-I) [Gallus gallus]
n/a
n/a
catalytic activity, hydrolase activity
lipid metabolism, fatty acid metabolism
n/a
LysoII, lysophospholipase II, IPI00123518
Salmo salar
GGTTTCCTTTATTTAATTGGGTTTTTATAACGTCAGATAATTGAATCAGCACAAGTACGGGCACCCAGGAATGACGGGGCACCCATGGGTAGCTGTGGCGCGACCACAACCCCACCAGCGGCCGTGAACCTGTTGGGAACAGCATACACAGCAGCATGGCACCAGAGTCACTCCAGACGGCACCAGACCCTCGGGGCCTGAGGACCAGAACCACAGGCTGCTGAACCTGCCATCTCCTCAGCCTGGGTCAGACTCGGACACTGGGTGGCATCTAGGAACAGGAGGAGCCCCCCTGCTCACTTACTGCTTCACTCACTGACACACACAGCAATGGAGGGAAACAGGAGTGGAGGTTCAGAGAAAGAAAGAGGGGATAATGGTGGGTTGGGTAAGATAAAAGAATCCCAGGGGTTGTACTGTGTTTATCAGTGATTCTCCCTCAAAGCGAAGACTTGTTTGCACACTTCAGTGTGTTCAAAACTGTGTGTTTATAAAAAGGTGTGTCCAGTATGATGTGCGTTGGATTTTTATGGAATGAGGCATGTATTATGATTATGATGTTATGTGAAAGTAAGTGTTACTGTGTTTGTGTGTGTGTGTGGAGGGGGCGGTGCTCATGGCTGTTTCCTGTGAGAGAATAGCAGGTCAGAGGTGAGAGGTCAGCGTCTA
AATGATCCATTGGTTTCCTTTATTTCAATTGGGTTTTTATAACGTCAGATAATTGAATCAGCACAAGTACGGGCACCCAGGAATGACGGGGCACCCATGGGTAGCTGTGGCGCGACCACAACCCCACCAGCGGCCGTGAACCTGTTGGGAACAGCATACACAGCAGCATGGCACCAGAGTCACTCCAGACGGCACCAGACCCTCGGGGCCTGAGGACCAGAACCACAGGCTGCTGAACCTGCCATCTCCTCAGCCTGGGTCAGACTCGGACACTGGGTGGCATCTAGGAACAGGAGGAGCCCCCCTGCTCACTTACTGCTTCACTCACTGACACACACAGCAATGGAGGGAAACAGGAGTGGAGGTTCAGAGAAAGAAAGAGGGGATAATGGTGGGTTGGGTAAGATAAAAGAATCCCAGGGGTTGTACTGTGTTTATCAGTGATTCTCCCTCAAAGCGAAGACTTGTTTGCACACTTCAGTGTGTTCAAAACTGTGTGTTTATAAAAAGGTGTGTCCAGTATGATGTGCGTTGGATTTTTATGGAATGAGGCATGTATTATGATTATGATGTTATGTGAAAGTAAGTGTTACTGTGTTTGTGTGTGTGTGTGGAGGGGGCGGTGCTCATGGCTGTTTCCTGTGAGAGAATAGCAGGTCAGAGGTGAGAGGTCAGCGTCTAAGAGTCACAGTGGGGTTGAGGTGAGGTCAGATTCGGGGCAACTGCTTCTCAATGAATTCCTTCACTGCTGCCATCTCCTGAGGACAGGAGCTGTGCATGAGTCCCGGGTAGGTCCGGAAGGTGATTTTCTGAGGGTTGACGATGATCTTGAGCTTCTCGGCCGTCATGGCCCCAAACTGCACTGGGATCATGGGGTCCATC
19
1
1
1
19
U17997 n/a
U17997 GFP
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
20
1
2
1
1
U17997 n/a
U17997 GFP
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
n/a
17328 28302 Kbytes .Supplementary data files not provided
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