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| Status |
Public on Sep 01, 2006 |
| Title |
UC Davis Human ENCODE array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen Systems Inc. |
| Manufacture protocol |
as described in http://www.nimblegen.com/products/chip/new_designs.html
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| Submission date |
Jul 06, 2006 |
| Last update date |
Oct 27, 2010 |
| Contact name |
Victor X Jin |
| E-mail(s) |
victor.jin@osumc.edu
|
| Phone |
614-2926931
|
| Organization name |
OSU Medical Center
|
| Department |
Biomedical Informatics
|
| Street address |
333 West 10th Ave
|
| City |
Columbus |
| State/province |
OH |
| ZIP/Postal code |
43210 |
| Country |
USA |
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| Samples (72)
|
GSM118662, GSM118663, GSM118699, GSM118700, GSM118701, GSM118704
GSM153604, GSM153605, GSM153606, GSM153607, GSM153608, GSM153609, GSM153610, GSM153611, GSM153612, GSM153613, GSM153614, GSM215655, GSM215656, GSM215657, GSM215658, GSM215659, GSM215702, GSM215703, GSM215704, GSM215737, GSM215738, GSM215739, GSM215740, GSM215741, GSM215742, GSM215743, GSM215744, GSM215745, GSM215746, GSM215747, GSM215748, GSM215749, GSM215750, GSM215751, GSM215752, GSM215753, GSM215754, GSM215755, GSM215756, GSM215757, GSM215758, GSM215765, GSM215766, GSM215767, GSM215768, GSM215769, GSM234782, GSM234783, GSM254805, GSM254806, GSM254807, GSM254930, GSM254971, GSM254972, GSM254973, GSM304033, GSM304034, GSM304035, GSM304036, GSM304037, GSM304038, GSM304039, GSM304040, GSM699322, GSM699323, GSM699324
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| Series (10)
|
| GSE5251 |
Improvements in sample preparation for ChIP-chip assays |
| GSE6624 |
Identification of genes directly regulated by the oncogene ZNF217 using ChIP-chip assays |
| GSE6634 |
Genes Directly Regulated by the Oncogene ZNF217 Using ChIP-chip Assays on ENCODE and Promoter Arrays and Expression Data |
| GSE8667 |
Genome-wide Analysis of KAP1 Binding Suggests Auto-regulation of KRAB-ZNFs |
| GSE8716 |
A ChIP-chip analysis of E2F family in normal and tumor cells reveals interchangeable roles of E2F family members |
| GSE10076 |
ENCODE spikein, amplified DNA samples, NimbleGen arrays |
| GSE10090 |
ENCODE spikein, nonamplified DNA samples, NimbleGen arrays |
| GSE10114 |
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets |
| GSE12126 |
E2F in vivo binding specificity: comparison of consensus vs. non-consensus binding sites |
| GSE28161 |
L3MBTL2 protein acts in concert with PcG protein mediated monoubiquitination of H2A to establish a repressive chromatin structure [ChIP-chip data]. |
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| Data table header descriptions |
| ID |
|
| GENBANK_ACC |
|
| CHROMOSOME |
chromosome number |
| RANGE_STRAND |
always plus |
| RANGE_START |
start point in chromosome |
| RANGE_END |
end point in chromosome |
| GB_RANGE |
Accession.version[start..end] |
| Data table |
| ID |
GENBANK_ACC |
CHROMOSOME |
RANGE_STRAND |
RANGE_START |
RANGE_END |
GB_RANGE |
| ENm001_CHR07P116605462 |
NC_000007.11 |
chr7 |
+ |
116605462 |
116605511 |
NC_000007.11[116605462..116605511] |
| ENm001_CHR07P115880080 |
NC_000007.11 |
chr7 |
+ |
115880080 |
115880129 |
NC_000007.11[115880080..115880129] |
| ENm001_CHR07P116072816 |
NC_000007.11 |
chr7 |
+ |
116072816 |
116072865 |
NC_000007.11[116072816..116072865] |
| ENm001_CHR07P116736524 |
NC_000007.11 |
chr7 |
+ |
116736524 |
116736573 |
NC_000007.11[116736524..116736573] |
| ENm001_CHR07P116133464 |
NC_000007.11 |
chr7 |
+ |
116133464 |
116133513 |
NC_000007.11[116133464..116133513] |
| ENm001_CHR07P116774144 |
NC_000007.11 |
chr7 |
+ |
116774144 |
116774193 |
NC_000007.11[116774144..116774193] |
| ENm001_CHR07P115811642 |
NC_000007.11 |
chr7 |
+ |
115811642 |
115811691 |
NC_000007.11[115811642..115811691] |
| ENm001_CHR07P116606602 |
NC_000007.11 |
chr7 |
+ |
116606602 |
116606651 |
NC_000007.11[116606602..116606651] |
| ENm001_CHR07P116855844 |
NC_000007.11 |
chr7 |
+ |
116855844 |
116855893 |
NC_000007.11[116855844..116855893] |
| ENm001_CHR07P115823650 |
NC_000007.11 |
chr7 |
+ |
115823650 |
115823699 |
NC_000007.11[115823650..115823699] |
| ENm001_CHR07P117101704 |
NC_000007.11 |
chr7 |
+ |
117101704 |
117101753 |
NC_000007.11[117101704..117101753] |
| ENm001_CHR07P115810692 |
NC_000007.11 |
chr7 |
+ |
115810692 |
115810741 |
NC_000007.11[115810692..115810741] |
| ENm001_CHR07P116217482 |
NC_000007.11 |
chr7 |
+ |
116217482 |
116217531 |
NC_000007.11[116217482..116217531] |
| ENm001_CHR07P117209434 |
NC_000007.11 |
chr7 |
+ |
117209434 |
117209483 |
NC_000007.11[117209434..117209483] |
| ENm001_CHR07P116425684 |
NC_000007.11 |
chr7 |
+ |
116425684 |
116425733 |
NC_000007.11[116425684..116425733] |
| ENm001_CHR07P117225508 |
NC_000007.11 |
chr7 |
+ |
117225508 |
117225557 |
NC_000007.11[117225508..117225557] |
| ENm001_CHR07P117230258 |
NC_000007.11 |
chr7 |
+ |
117230258 |
117230307 |
NC_000007.11[117230258..117230307] |
| ENm001_CHR07P115843068 |
NC_000007.11 |
chr7 |
+ |
115843068 |
115843117 |
NC_000007.11[115843068..115843117] |
| ENm001_CHR07P116934504 |
NC_000007.11 |
chr7 |
+ |
116934504 |
116934553 |
NC_000007.11[116934504..116934553] |
| ENm001_CHR07P115900904 |
NC_000007.11 |
chr7 |
+ |
115900904 |
115900953 |
NC_000007.11[115900904..115900953] |
Total number of rows: 385149
Table truncated, full table size 35451 Kbytes.
| Supplementary data files not provided |
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