GEO help: Mouse over screen elements for information.
Status
Public on Aug 02, 2006
Title
Sentrix Mouse-6 Expression BeadChip
Technology type
oligonucleotide beads
Distribution
commercial
Organism
Mus musculus Manufacturer
Illumina Inc.
Manufacture protocol
http://www.illumina.com/technology/platform/tech_plat_arraymfg.ilmn Catalog number
BD-26-101
Description
The Sentrix Mouse-6 BeadChip can be used to study expression of over 47,000 transcripts. Array content is based largely on the MEEBO set. The MEEBO content represented on the BeadChips is supplemented with more than 11,000 probes for additional targets from RIKEN FANTOM2 and the NCBI RefSeq transcript databases. Researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Array is composed of 3 micron features with average feature redundancy of 30-fold. All features are QCed by sequential hybridizations process called array decoding. Probes are fully screened all-full-length 50-mers. Assay requires 50-100ng of total RNA input.
Web link
http://www.illumina.com/General/pdf/mouse68.pdf Contributor(s)
Greber B Submission date
Aug 02, 2006
Last update date
Feb 10, 2009
Contact name
GEO admin
E-mail(s)
geo@ncbi.nlm.nih.gov Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (68)
GSM124773 , GSM124774 , GSM124775 , GSM124776 , GSM146235 , GSM146236
GSM214106 ,
GSM214107 ,
GSM214108 ,
GSM214109 ,
GSM214110 ,
GSM214111 ,
GSM214112 ,
GSM214113 ,
GSM214114 ,
GSM214115 ,
GSM214116 ,
GSM214117 ,
GSM214118 ,
GSM214119 ,
GSM214120 ,
GSM214121 ,
GSM214122 ,
GSM214123 ,
GSM493604 ,
GSM493605 ,
GSM493606 ,
GSM493607 ,
GSM493608 ,
GSM493609 ,
GSM493610 ,
GSM493611 ,
GSM493612 ,
GSM493613 ,
GSM493614 ,
GSM510091 ,
GSM510092 ,
GSM510093 ,
GSM510094 ,
GSM510095 ,
GSM510096 ,
GSM510097 ,
GSM510098 ,
GSM510099 ,
GSM510100 ,
GSM510101 ,
GSM510102 ,
GSM591820 ,
GSM591821 ,
GSM591822 ,
GSM591823 ,
GSM591824 ,
GSM591825 ,
GSM591826 ,
GSM591827 ,
GSM591828 ,
GSM686173 ,
GSM686174 ,
GSM686175 ,
GSM686176 ,
GSM686177 ,
GSM686178 ,
GSM686179 ,
GSM686180 ,
GSM686181 ,
GSM686182 ,
GSM686183 ,
GSM686184 Series (9)
GSE5437 FGF2 stimulation experiment with CF1 mouse embryonic fibroblasts
GSE6313 Comparison of Hybridization-based and Sequencing-based Gene Expression Technologies on Biological Replicates
GSE8641 Rnf41 is associated with anxiety like behavior, major depression and beta carboline induced seizure
GSE19492 Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages
GSE19766 Transcriptional responses of mouse bone marrow-derived macrophages (BMM) to lipopolysaccharide (LPS) - Illumina arrays
GSE20583 Global Profiling of Activin Target Genes in Mouse Granulosa Cells
GSE24051 Neurological defects in CAIX knockout mice
GSE27711 Gene expression profiles of spontaneous gastric tumors in the antrum of the stomach of 30,60, and 90 day old CEA424-SV40 -T antigen transgenic mice.
GSE27712 GC424 tumor cells and gastric tumors
Data table header descriptions ID GB_ACC GenBank accession number
SYMBOL Gene symbol
TYPE A = oligo matches all known splice isoforms; I = isoform-specific oligo; S = oligo specifies single known splice form
GENE_NAME SEQUENCE Specific stretch of oligonucleotide sequence
Data table ID GB_ACC SYMBOL TYPE GENE_NAME SEQUENCE scl0016577.1_67-S
AB001436 S
Mus musculus mRNA for motor domain of KIF8, partial cds.
GGACGATGATTCAGCGGCAAACGACTCCAAGAAGCAGATTCGCATTTTCG
scl0001584.1_223-S
AB005132 limk2b
S
CAGCCAGCCTGAGGCGCTCCCAGACGGGTTTGCAGCTGAGCCTGTTTATC
scl0001162.1_31-S
AB009397 Mitf
S
Mus musculus microphthalmia-associated transcription factor (Mitf), mRNA.
ATCTTTCTCAGGTGCCCGGGTTCTGGTCCAAGTCCCAAGCAGTGGAAGGC
scl0003433.1_1-S
AB024538 Islr
S
Mus musculus immunoglobulin superfamily containing leucine-rich repeat (Islr), mRNA.
GAGCTGTGTGCAAAGGAGAAGCTGGGGTCCACTTCCATCTTGTCTTCATC
scl0001959.1_79-S
AB029145 S
Mus musculus mRNA for pUb-R4, complete cds.
TGGGGAGCAGTGTGGCCAGCCCTGTGGAATATCTACTAGGTCTACCCTGG
scl0002745.1_20-S
AB088412 BACH
S
Mus musculus brain acyl-CoA hydrolase (Bach), mRNA.
CTTGGCTCTCCGAGTCCTCAGAAAGGAAGTCACTGAGGCCTACCTCAGAG
scl0001263.1_3048-S
AB093269 mKIAA0864
S
GCTGAGATTTTACAAGAAGGCCTGTCAGGAGGCTAAGGGGGCTTCAGGCC
scl0003186.1_2-S
AB093292 mKIAA1294
S
CTCTCCCATCATGGATGGGTCTGAGTCTCCAACACACCAAAGTACTGATG
scl0003386.1_2-S
AB100271 Ttn
S
Mus musculus titin (Ttn), mRNA.
CCAAAGAAAGTTGTTGAAGAAAAAATACAGATTTCAATTACCAAACGTGA
scl0003290.1_30-S
AB117944 Capn3
S
Mus musculus calpain 3 (Capn3), mRNA.
GAGCTACAGAATTTCTGTGATGTTCAGCAATTTGAGGCCTTAGGAACTGG
TRBV1_AE000663_T_cell_receptor_beta_variable_1_207-S
AE000663 S
GAGACGGTGCCCAGTCGTTTTATACCTGAATGCCCAGACAGCTCCAAGCT
TRBV11_AE000663_T_cell_receptor_beta_variable_11_244-S
AE000663 S
GCCCAATCAGTCGCACTCAACTCTGAAGATCCAGAGCACGCAACCCCAGG
TRBV6_AE000663_T_cell_receptor_beta_variable_6_11-S
AE000663 S
GGGTAACCCTTTGTCTCCTTACTGTAGAGACCACACATGGTGATGGTGGC
TRBV7_AE000663_T_cell_receptor_beta_variable_7_29-S
AE000663 S
CCTAGGAACAGGCCTTGTGGACATGAAAGTAACCCAGATGCCAAGATACC
TRBV8_AE000663_T_cell_receptor_beta_variable_8_270-S
AE000663 S
GGAGTTGGCTACCCCCTCTCAGACATCAGTGTACTTCTGTGCCAGCGGTG
TRBV17_AE000664_T_cell_receptor_beta_variable_17_29-S
AE000664 S
GGGCAGGCTCTTTTGTTGCTGGAGTAACCCAGACTCCACGATACCTGGTC
TRBV19_AE000664_T_cell_receptor_beta_variable_19_39-S
AE000664 S
CATCAAGCTCCATGGACTCTGGGGTTGTCCAGAATCCTAGACATCTGGTC
TRBV20_AE000664_T_cell_receptor_beta_variable_20_189-S
AE000664 S
ATCAACAGCCTCTTGATCAAATAGACATGGTCAAGGAGAGATTCTCAGCT
TRBV23_AE000664_T_cell_receptor_beta_variable_23_106-S
AE000664 S
GACCCTTCGAAGTGAAAGAACACAGTCATGTTATATGGTATAGTCATGGT
TRBV27_AE000664_T_cell_receptor_beta_variable_27_261-S
AE000664 S
GGTGACTAGCATCCTGAATTGAATCTGAGCTCTCTAGAGCCAAAGGACTC
46116 6309 Kbytes .Supplementary data files not provided
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