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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 01, 2006 |
| Title |
Mouse Prostate MPEDB cDNA Array v2 |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Mus musculus |
| Manufacturer |
FHCRC Array Facility |
| Manufacture protocol |
As cited
|
| Support |
glass |
| Coating |
polyLlysine |
| |
|
| |
|
| Contributor(s) |
Nelson PS, Pritchard C, Abbott DE, Dumpit R |
| Submission date |
Aug 08, 2006 |
| Last update date |
Jan 17, 2013 |
| Contact name |
Denise Mauldin |
| E-mail(s) |
dmauldin@fhcrc.org
|
| Phone |
2066673480
|
| Fax |
2066672917
|
| URL |
http://www.pedb.org
|
| Organization name |
Fred Hutchinson Cancer Research Center
|
| Department |
Human Biology
|
| Lab |
Peter Nelson
|
| Street address |
1100 Fairview Ave N D4-100
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
| |
|
| Samples (33)
|
GSM538029, GSM538030, GSM538031, GSM538032, GSM538033, GSM538034
GSM538035, GSM538036, GSM538037, GSM538038, GSM538039, GSM538040, GSM538041, GSM538042, GSM538043, GSM538044, GSM538045, GSM538046, GSM538047, GSM538048, GSM538049, GSM538050, GSM538051, GSM538052, GSM1420141, GSM1420142, GSM1420143, GSM1420144, GSM1420145, GSM1420146, GSM1420147, GSM1420148, GSM1420149
|
| Series (2) |
| GSE21542 |
The Effects of Aging on the Molecular and Cellular Composition of the Prostate Microenvironment |
| GSE58822 |
TMPRSS2 Influences Prostate Cancer Metastasis |
|
| Data table header descriptions |
| ID |
Feature ID for each spot, one per spot on the array. |
| MetaCol |
Column referring to overall organization |
| MetaRow |
Row referring to overall organization |
| Column |
Column within metastructure |
| Row |
Row within metastructure |
| Biosequence Type |
type of clone |
| Strand Type |
strandedness |
| Region |
clone set (0 = MPEDB v1, 1 = Mouse Research Genetics, 2 = MPEDB v2) |
| GB_ACC |
Accession number |
| SPOT_ID |
Spot information |
| UNIGENE |
Unigene Cluster from Unigene Mm.154 |
| Reporter Usage |
Reporter role [control or experimental] |
| Control Type |
Type of Control |
| MPEDB Spot ID |
Spot ID, one per gene on array |
| Designation |
Reporter type |
| Related Gene Symbol |
Gene symbol of Unigene Cluster |
| Description |
Gene description |
| GENE |
Entrez GENE ID |
| Chromosome |
Chromosome Location |
| Data table |
| ID |
MetaCol |
MetaRow |
Column |
Row |
Biosequence Type |
Strand Type |
Region |
GB_ACC |
SPOT_ID |
UNIGENE |
Reporter Usage |
Control Type |
MPEDB Spot ID |
Designation |
Related Gene Symbol |
Description |
GENE |
Chromosome |
| 43953 |
1 |
1 |
1 |
1 |
cdna clone |
double |
0 |
DV038825 |
Unconfirmed |
Mm.207324 |
Experimental |
- |
MAID:2 |
Gene |
Svs1 |
Unconfirmed: Seminal vesicle secretion 1 |
243377 |
6B2.3 |
| 43975 |
1 |
1 |
2 |
1 |
cdna clone |
double |
0 |
AL844857 |
|
|
Experimental |
- |
MAID:4 |
Gene |
|
Mouse DNA sequence from clone RP23-74L17 on chromosome X complete sequence |
|
|
| 43997 |
1 |
1 |
3 |
1 |
cdna clone |
double |
0 |
DV038829 |
|
Mm.27913 |
Experimental |
- |
MAID:6 |
Gene |
Pb1 |
Polybromo 1 |
66923 |
14 B |
| 44019 |
1 |
1 |
4 |
1 |
cdna clone |
double |
0 |
DV038834 |
|
Mm.132162 |
Experimental |
- |
MAID:8 |
Gene |
Lrrc7 |
Leucine rich repeat containing 7 |
242274 |
3 H4 |
| 44041 |
1 |
1 |
5 |
1 |
cdna clone |
double |
0 |
DV046564 |
|
Mm.246551 |
Experimental |
- |
MAID:10 |
Gene |
Erh |
Enhancer of rudimentary homolog (Drosophila) |
13877 |
12 D1 |
| 44063 |
1 |
1 |
6 |
1 |
cdna clone |
double |
0 |
DV046141 |
|
Mm.247113 |
Experimental |
- |
MAID:12 |
Gene |
Cnot6 |
CCR4-NOT transcription complex subunit 6 |
104625 |
11 B1.2 |
| 44085 |
1 |
1 |
7 |
1 |
cdna clone |
double |
0 |
DV038913 |
Unconfirmed |
Mm.170002 |
Experimental |
- |
MAID:50 |
Gene |
AI848100 |
Unconfirmed: Expressed sequence AI848100 |
226551 |
1H2.1 |
| 44107 |
1 |
1 |
8 |
1 |
cdna clone |
double |
0 |
DV046171 |
|
Mm.392230 |
Experimental |
- |
MAID:52 |
Gene |
9830115L13Rik |
RIKEN cDNA 9830115L13 gene |
319257 |
6 |
| 44129 |
1 |
1 |
9 |
1 |
cdna clone |
double |
0 |
DV038920 |
|
Mm.118836 |
Experimental |
- |
MAID:54 |
Gene |
LOC434396 |
Similar to PIP-1 protein precursor |
434396 |
9 A4 |
| 44151 |
1 |
1 |
10 |
1 |
cdna clone |
double |
0 |
DV038924 |
Unconfirmed |
Mm.272037 |
Experimental |
- |
MAID:56 |
Gene |
BC049816 |
Unconfirmed: CDNA sequence BC049816 |
232313 |
6D3 |
| 44173 |
1 |
1 |
11 |
1 |
cdna clone |
double |
0 |
BP770901 |
|
Mm.10516 |
Experimental |
- |
MAID:58 |
Gene |
Prlr |
Prolactin receptor |
19116 |
15 A1|15 4.6 cM |
| 44195 |
1 |
1 |
12 |
1 |
cdna clone |
double |
0 |
DV038930 |
Unconfirmed |
Mm.8034 |
Experimental |
- |
MAID:60 |
Gene |
Pbsn |
Unconfirmed: Probasin |
54192 |
XA7.3 |
| 44217 |
1 |
1 |
13 |
1 |
cdna clone |
double |
0 |
AK154820 |
|
Mm.117294 |
Experimental |
- |
MAID:386 |
Gene |
Man1a |
Mannosidase 1 alpha |
17155 |
10 B3 |
| 44239 |
1 |
1 |
14 |
1 |
cdna clone |
double |
0 |
AC154563 |
|
|
Experimental |
- |
MAID:388 |
Gene |
|
Mus musculus BAC clone RP23-401E22 from chromosome 14 complete sequence |
|
|
| 44261 |
1 |
1 |
15 |
1 |
cdna clone |
double |
0 |
AI425662 |
|
Mm.347935 |
Experimental |
- |
MAID:390 |
Gene |
Tmem42 |
Transmembrane protein 42 |
66079 |
9 F4|9 72.0 cM |
| 44283 |
1 |
1 |
16 |
1 |
cdna clone |
double |
0 |
DV054311 |
|
Mm.354652 |
Experimental |
- |
MAID:392 |
Gene |
Eapa2 |
Experimental autoimmune prostatitis antigen 2 |
403088 |
6 B2.1 |
| 44305 |
1 |
1 |
17 |
1 |
cdna clone |
double |
0 |
AK158104 |
|
Mm.261859 |
Experimental |
- |
MAID:394 |
Gene |
Exoc3 |
Exocyst complex component 3 |
211446 |
13 C1 |
| 44327 |
1 |
1 |
18 |
1 |
cdna clone |
double |
0 |
AK076072 |
|
Mm.260433 |
Experimental |
- |
MAID:396 |
Gene |
Ptpn2 |
Protein tyrosine phosphatase non-receptor type 2 |
19255 |
18 E1 |
| 44349 |
1 |
1 |
19 |
1 |
cdna clone |
double |
0 |
AK084519 |
|
Mm.140619 |
Experimental |
- |
MAID:434 |
Gene |
Egln1 |
EGL nine homolog 1 (C elegans) |
112405 |
8 E2 |
| 44371 |
1 |
1 |
20 |
1 |
cdna clone |
double |
0 |
AA710317 |
|
Mm.339491 |
Experimental |
- |
MAID:436 |
Gene |
Rpl41 |
Ribosomal protein L41 |
67945 |
10 D3 |
Total number of rows: 16192
Table truncated, full table size 2293 Kbytes.
| Supplementary data files not provided |
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